RNA–Protein interactions for RNA: ENST00000490831.1

COL27A1-206, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 3

Gene COL27A1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-206ENST00000490831 DUOX2Q9NRD8 1548 aa23.6■■□□□ 1.37
COL27A1-206ENST00000490831 RNF17Q9BXT8 1623 aaKnown RBP23.6■■□□□ 1.37
COL27A1-206ENST00000490831 KDM5DQ9BY66 1539 aa23.59■■□□□ 1.37
COL27A1-206ENST00000490831 PTPRKQ15262 1439 aa23.59■■□□□ 1.37
COL27A1-206ENST00000490831 KIF15Q9NS87 1388 aa23.56■■□□□ 1.36
COL27A1-206ENST00000490831 ERBINQ96RT1 1412 aa23.54■■□□□ 1.36
COL27A1-206ENST00000490831 WASHC2CQ9Y4E1 1318 aa23.53■■□□□ 1.36
COL27A1-206ENST00000490831 MROH1Q8NDA8 1641 aa23.52■■□□□ 1.36
COL27A1-206ENST00000490831 ADGRL2O95490 1459 aa23.52■■□□□ 1.36
COL27A1-206ENST00000490831 ANKRD30AQ9BXX3 1397 aa23.52■■□□□ 1.36
COL27A1-206ENST00000490831 NCOA1Q15788 1441 aa23.51■■□□□ 1.35
COL27A1-206ENST00000490831 PZPP20742 1482 aa23.51■■□□□ 1.35
COL27A1-206ENST00000490831 RRP7BPQ9NSQ0 103 aa23.51■■□□□ 1.35
COL27A1-206ENST00000490831 ZC3H13Q5T200 1668 aaKnown RBP23.49■■□□□ 1.35
COL27A1-206ENST00000490831 FAM50AQ14320 339 aaKnown RBP23.49■■□□□ 1.35
COL27A1-206ENST00000490831 ABCC3O15438 1527 aa23.49■■□□□ 1.35
COL27A1-206ENST00000490831 MYO3AQ8NEV4 1616 aa23.48■■□□□ 1.35
COL27A1-206ENST00000490831 ZNF142P52746 1687 aaPredicted RBP23.48■■□□□ 1.35
COL27A1-206ENST00000490831 CHIC2Q9UKJ5 165 aa23.47■■□□□ 1.35
COL27A1-206ENST00000490831 STRCQ7RTU9 1775 aa23.47■■□□□ 1.35
COL27A1-206ENST00000490831 PRDM15P57071 1507 aaPredicted RBP23.46■■□□□ 1.35
COL27A1-206ENST00000490831 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.45■■□□□ 1.34
COL27A1-206ENST00000490831 DEPDC5O75140 1603 aa23.44■■□□□ 1.34
COL27A1-206ENST00000490831 CEP170BQ9Y4F5 1589 aaPredicted RBP23.44■■□□□ 1.34
COL27A1-206ENST00000490831 FBXO31Q5XUX0 539 aaPredicted RBP23.43■■□□□ 1.34
COL27A1-206ENST00000490831 TNRQ92752 1358 aa23.41■■□□□ 1.34
COL27A1-206ENST00000490831 A2ML1A8K2U0 1454 aa23.41■■□□□ 1.34
COL27A1-206ENST00000490831 PPARGC1BQ86YN6 1023 aaKnown RBP23.4■■□□□ 1.34
COL27A1-206ENST00000490831 DMRT2Q9Y5R5 561 aa23.4■■□□□ 1.34
COL27A1-206ENST00000490831 CAMSAP1Q5T5Y3 1602 aa23.39■■□□□ 1.33
COL27A1-206ENST00000490831 PLA2R1Q13018 1463 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 PTPRTO14522 1441 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 ARHGAP31Q2M1Z3 1444 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 SPATA31D1Q6ZQQ2 1576 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 CEP152O94986 1710 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 ROCK1Q13464 1354 aa23.38■■□□□ 1.33
COL27A1-206ENST00000490831 VWDEQ8N2E2 1590 aa23.37■■□□□ 1.33
COL27A1-206ENST00000490831 NLRP1Q9C000 1473 aa23.36■■□□□ 1.33
COL27A1-206ENST00000490831 ANKRD50Q9ULJ7 1429 aa23.35■■□□□ 1.33
COL27A1-206ENST00000490831 LMTK2Q8IWU2 1503 aa23.35■■□□□ 1.33
COL27A1-206ENST00000490831 ERVK-7P63135 1459 aa23.35■■□□□ 1.33
COL27A1-206ENST00000490831 KANK1Q14678 1352 aa23.34■■□□□ 1.33
COL27A1-206ENST00000490831 RRBP1Q9P2E9 1410 aaKnown RBP23.33■■□□□ 1.33
COL27A1-206ENST00000490831 PKD2Q13563 968 aa23.3■■□□□ 1.32
COL27A1-206ENST00000490831 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.3■■□□□ 1.32
COL27A1-206ENST00000490831 ILDR1Q86SU0 546 aaPredicted RBP23.26■■□□□ 1.31
COL27A1-206ENST00000490831 NCKAP5LQ9HCH0 1330 aa23.26■■□□□ 1.31
COL27A1-206ENST00000490831 UGGT1Q9NYU2 1555 aa23.26■■□□□ 1.31
COL27A1-206ENST00000490831 UNC13BO14795 1591 aa23.24■■□□□ 1.31
COL27A1-206ENST00000490831 THEMISQ8N1K5 641 aaPredicted RBP23.24■■□□□ 1.31
COL27A1-206ENST00000490831 EFCAB6Q5THR3 1501 aa23.23■■□□□ 1.31
COL27A1-206ENST00000490831 CFAP65Q6ZU64 1925 aaKnown RBP23.23■■□□□ 1.31
COL27A1-206ENST00000490831 ITGAEP38570 1179 aa23.21■■□□□ 1.31
COL27A1-206ENST00000490831 CERKQ8TCT0 537 aa23.2■■□□□ 1.3
COL27A1-206ENST00000490831 FBXO41Q8TF61 875 aa23.2■■□□□ 1.3
COL27A1-206ENST00000490831 RPRD2Q5VT52 1461 aaKnown RBP23.19■■□□□ 1.3
COL27A1-206ENST00000490831 NOS1P29475 1434 aa23.19■■□□□ 1.3
COL27A1-206ENST00000490831 NEURL4Q96JN8 1562 aa23.18■■□□□ 1.3
COL27A1-206ENST00000490831 POLR1AO95602 1720 aaPredicted RBP23.18■■□□□ 1.3
COL27A1-206ENST00000490831 TET3O43151 1660 aa23.17■■□□□ 1.3
COL27A1-206ENST00000490831 LTBP4Q8N2S1 1624 aa23.17■■□□□ 1.3
COL27A1-206ENST00000490831 UBR1Q8IWV7 1749 aa23.16■■□□□ 1.3
COL27A1-206ENST00000490831 ANKLE2Q86XL3 938 aa23.16■■□□□ 1.3
COL27A1-206ENST00000490831 MED14O60244 1454 aa23.16■■□□□ 1.3
COL27A1-206ENST00000490831 SYNMO15061 1565 aa23.14■■□□□ 1.3
COL27A1-206ENST00000490831 IQGAP3Q86VI3 1631 aa23.14■■□□□ 1.29
COL27A1-206ENST00000490831 GCC2Q8IWJ2 1684 aa23.13■■□□□ 1.29
COL27A1-206ENST00000490831 KDM5AP29375 1690 aaKnown RBP23.12■■□□□ 1.29
COL27A1-206ENST00000490831 SLIT1O75093 1534 aa23.12■■□□□ 1.29
COL27A1-206ENST00000490831 ARHGAP23Q9P227 1491 aa23.11■■□□□ 1.29
COL27A1-206ENST00000490831 PIK3C2BO00750 1634 aa23.11■■□□□ 1.29
COL27A1-206ENST00000490831 NAIPQ13075 1403 aa23.1■■□□□ 1.29
COL27A1-206ENST00000490831 IDI1Q13907 227 aa23.1■■□□□ 1.29
COL27A1-206ENST00000490831 SLC52A1Q9NWF4 448 aa23.09■■□□□ 1.29
COL27A1-206ENST00000490831 NUP155O75694 1391 aa23.09■■□□□ 1.29
COL27A1-206ENST00000490831 NPHP4O75161 1426 aaPredicted RBP23.08■■□□□ 1.29
COL27A1-206ENST00000490831 ZNF335Q9H4Z2 1342 aaPredicted RBP23.08■■□□□ 1.28
COL27A1-206ENST00000490831 IQSEC2Q5JU85 1478 aa23.07■■□□□ 1.28
COL27A1-206ENST00000490831 HFM1A2PYH4 1435 aa23.07■■□□□ 1.28
COL27A1-206ENST00000490831 E9PCH4 1651 aa23.06■■□□□ 1.28
COL27A1-206ENST00000490831 SCAF11Q99590 1463 aaKnown RBP23.05■■□□□ 1.28
COL27A1-206ENST00000490831 TMEM2Q9UHN6 1383 aa23.04■■□□□ 1.28
COL27A1-206ENST00000490831 IQGAP1P46940 1657 aa23.04■■□□□ 1.28
COL27A1-206ENST00000490831 ADGRB3O60242 1522 aa23.03■■□□□ 1.28
COL27A1-206ENST00000490831 LTKP29376 864 aa23.02■■□□□ 1.28
COL27A1-206ENST00000490831 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
COL27A1-206ENST00000490831 STAG3Q9UJ98 1225 aa23■■□□□ 1.27
COL27A1-206ENST00000490831 EID1Q9Y6B2 187 aa22.98■■□□□ 1.27
COL27A1-206ENST00000490831 CPS1P31327 1500 aa22.98■■□□□ 1.27
COL27A1-206ENST00000490831 TMEM131LA2VDJ0 1609 aa22.96■■□□□ 1.27
COL27A1-206ENST00000490831 ZFYVE9O95405 1425 aa22.93■■□□□ 1.26
COL27A1-206ENST00000490831 MYO5BQ9ULV0 1848 aa22.9■■□□□ 1.26
COL27A1-206ENST00000490831 SPHKAPQ2M3C7 1700 aa22.9■■□□□ 1.26
COL27A1-206ENST00000490831 STRCP1A6NGW2 1772 aa22.88■■□□□ 1.25
COL27A1-206ENST00000490831 RIMS2Q9UQ26 1411 aa22.87■■□□□ 1.25
COL27A1-206ENST00000490831 HDGFP51858 240 aaKnown RBP22.85■■□□□ 1.25
COL27A1-206ENST00000490831 TRPM2O94759 1503 aa22.84■■□□□ 1.25
COL27A1-206ENST00000490831 TRIM52Q96A61 297 aa22.84■■□□□ 1.25
COL27A1-206ENST00000490831 PLEKHG1Q9ULL1 1385 aa22.84■■□□□ 1.25
COL27A1-206ENST00000490831 LRRC7Q96NW7 1537 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms