RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 FAM135AQ9P2D6 1515 aa15.07■□□□□ 0
HDAC3-210ENST00000490808 DHX29Q7Z478 1369 aaKnown RBP15.06■□□□□ 0
HDAC3-210ENST00000490808 ANKRD30AQ9BXX3 1397 aa15.06■□□□□ 0
HDAC3-210ENST00000490808 ADGRL2O95490 1459 aa15.06■□□□□ 0
HDAC3-210ENST00000490808 RAB3GAP2Q9H2M9 1393 aa15.05■□□□□ -0
HDAC3-210ENST00000490808 EIF2AK4Q9P2K8 1649 aaKnown RBP15.05■□□□□ -0
HDAC3-210ENST00000490808 DUOX2Q9NRD8 1548 aa15.04■□□□□ -0
HDAC3-210ENST00000490808 ROCK1Q13464 1354 aa15.04■□□□□ -0
HDAC3-210ENST00000490808 HFM1A2PYH4 1435 aa15.02■□□□□ -0
HDAC3-210ENST00000490808 FER1L4A9Z1Z3 1794 aa15.02□□□□□ -0.01
HDAC3-210ENST00000490808 NCOA1Q15788 1441 aa15.01□□□□□ -0.01
HDAC3-210ENST00000490808 ERBINQ96RT1 1412 aa15.01□□□□□ -0.01
HDAC3-210ENST00000490808 DHX57Q6P158 1386 aaKnown RBP15.01□□□□□ -0.01
HDAC3-210ENST00000490808 CNTLNQ9NXG0 1405 aa15□□□□□ -0.01
HDAC3-210ENST00000490808 SIGLEC1Q9BZZ2 1709 aa15□□□□□ -0.01
HDAC3-210ENST00000490808 MLECQ14165 292 aa15□□□□□ -0.01
HDAC3-210ENST00000490808 KIF15Q9NS87 1388 aa14.99□□□□□ -0.01
HDAC3-210ENST00000490808 SPATA31D1Q6ZQQ2 1576 aa14.99□□□□□ -0.01
HDAC3-210ENST00000490808 SETD1BQ9UPS6 1966 aaKnown RBP14.99□□□□□ -0.01
HDAC3-210ENST00000490808 PREX1Q8TCU6 1659 aa14.97□□□□□ -0.01
HDAC3-210ENST00000490808 RNF17Q9BXT8 1623 aaKnown RBP14.97□□□□□ -0.01
HDAC3-210ENST00000490808 MROH2AA6NES4 1674 aa14.97□□□□□ -0.01
HDAC3-210ENST00000490808 GCC2Q8IWJ2 1684 aa14.97□□□□□ -0.01
HDAC3-210ENST00000490808 ESF1Q9H501 851 aaKnown RBP14.96□□□□□ -0.01
HDAC3-210ENST00000490808 ZC3H13Q5T200 1668 aaKnown RBP14.94□□□□□ -0.02
HDAC3-210ENST00000490808 STRCQ7RTU9 1775 aa14.93□□□□□ -0.02
HDAC3-210ENST00000490808 NAIPQ13075 1403 aa14.93□□□□□ -0.02
HDAC3-210ENST00000490808 DMRT2Q9Y5R5 561 aa14.93□□□□□ -0.02
HDAC3-210ENST00000490808 PTPRKQ15262 1439 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 ANKRD50Q9ULJ7 1429 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 DEPDC5O75140 1603 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 KIF3BO15066 747 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 CHIC2Q9UKJ5 165 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 KDM5DQ9BY66 1539 aa14.92□□□□□ -0.02
HDAC3-210ENST00000490808 RRP7BPQ9NSQ0 103 aa14.91□□□□□ -0.02
HDAC3-210ENST00000490808 TIMELESSQ9UNS1 1208 aa14.91□□□□□ -0.02
HDAC3-210ENST00000490808 KANK1Q14678 1352 aa14.9□□□□□ -0.02
HDAC3-210ENST00000490808 PRDM15P57071 1507 aaPredicted RBP14.9□□□□□ -0.02
HDAC3-210ENST00000490808 CEBPAP49715 358 aaPredicted RBP14.89□□□□□ -0.03
HDAC3-210ENST00000490808 GGT6Q6P531 493 aa14.88□□□□□ -0.03
HDAC3-210ENST00000490808 CLTCQ00610 1675 aaKnown RBP14.86□□□□□ -0.03
HDAC3-210ENST00000490808 WASHC2CQ9Y4E1 1318 aa14.86□□□□□ -0.03
HDAC3-210ENST00000490808 NPATQ14207 1427 aa14.85□□□□□ -0.03
HDAC3-210ENST00000490808 UHRF1BP1Q6BDS2 1440 aa14.85□□□□□ -0.03
HDAC3-210ENST00000490808 TRIM52Q96A61 297 aa14.85□□□□□ -0.03
HDAC3-210ENST00000490808 LMTK2Q8IWU2 1503 aa14.85□□□□□ -0.03
HDAC3-210ENST00000490808 UNC13BO14795 1591 aa14.85□□□□□ -0.03
HDAC3-210ENST00000490808 MROH1Q8NDA8 1641 aa14.84□□□□□ -0.03
HDAC3-210ENST00000490808 C3P01024 1663 aa14.84□□□□□ -0.03
HDAC3-210ENST00000490808 VWDEQ8N2E2 1590 aa14.84□□□□□ -0.03
HDAC3-210ENST00000490808 ARHGAP31Q2M1Z3 1444 aa14.83□□□□□ -0.03
HDAC3-210ENST00000490808 ABCC3O15438 1527 aa14.83□□□□□ -0.04
HDAC3-210ENST00000490808 ZMYM3Q14202 1370 aa14.83□□□□□ -0.04
HDAC3-210ENST00000490808 PZPP20742 1482 aa14.82□□□□□ -0.04
HDAC3-210ENST00000490808 PTPRTO14522 1441 aa14.81□□□□□ -0.04
HDAC3-210ENST00000490808 RPRD2Q5VT52 1461 aaKnown RBP14.8□□□□□ -0.04
HDAC3-210ENST00000490808 CAMSAP1Q5T5Y3 1602 aa14.8□□□□□ -0.04
HDAC3-210ENST00000490808 IQGAP3Q86VI3 1631 aa14.8□□□□□ -0.04
HDAC3-210ENST00000490808 TET3O43151 1660 aa14.79□□□□□ -0.04
HDAC3-210ENST00000490808 CEP152O94986 1710 aa14.79□□□□□ -0.04
HDAC3-210ENST00000490808 LTBP4Q8N2S1 1624 aa14.79□□□□□ -0.04
HDAC3-210ENST00000490808 IQSEC2Q5JU85 1478 aa14.77□□□□□ -0.04
HDAC3-210ENST00000490808 ZNF316A6NFI3 1004 aaPredicted RBP14.76□□□□□ -0.05
HDAC3-210ENST00000490808 EFCAB6Q5THR3 1501 aa14.76□□□□□ -0.05
HDAC3-210ENST00000490808 MPHOSPH9Q99550 1183 aa14.75□□□□□ -0.05
HDAC3-210ENST00000490808 NUP155O75694 1391 aa14.74□□□□□ -0.05
HDAC3-210ENST00000490808 NEUROD1Q13562 356 aa14.74□□□□□ -0.05
HDAC3-210ENST00000490808 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.74□□□□□ -0.05
HDAC3-210ENST00000490808 NLRP1Q9C000 1473 aa14.74□□□□□ -0.05
HDAC3-210ENST00000490808 CFAP65Q6ZU64 1925 aaKnown RBP14.74□□□□□ -0.05
HDAC3-210ENST00000490808 TONSLQ96HA7 1378 aa14.73□□□□□ -0.05
HDAC3-210ENST00000490808 ZNF142P52746 1687 aaPredicted RBP14.72□□□□□ -0.05
HDAC3-210ENST00000490808 SLC4A1APQ9BWU0 796 aaKnown RBP14.72□□□□□ -0.05
HDAC3-210ENST00000490808 ERVK-7P63135 1459 aa14.71□□□□□ -0.05
HDAC3-210ENST00000490808 TNRQ92752 1358 aa14.71□□□□□ -0.06
HDAC3-210ENST00000490808 KDM5AP29375 1690 aaKnown RBP14.71□□□□□ -0.06
HDAC3-210ENST00000490808 UBAP1LF5GYI3 381 aa14.69□□□□□ -0.06
HDAC3-210ENST00000490808 MYO3AQ8NEV4 1616 aa14.69□□□□□ -0.06
HDAC3-210ENST00000490808 NOS1P29475 1434 aa14.68□□□□□ -0.06
HDAC3-210ENST00000490808 SIN3AQ96ST3 1273 aa14.68□□□□□ -0.06
HDAC3-210ENST00000490808 SLC52A1Q9NWF4 448 aa14.68□□□□□ -0.06
HDAC3-210ENST00000490808 A2ML1A8K2U0 1454 aa14.68□□□□□ -0.06
HDAC3-210ENST00000490808 E9PCH4 1651 aa14.68□□□□□ -0.06
HDAC3-210ENST00000490808 CEP170BQ9Y4F5 1589 aaPredicted RBP14.67□□□□□ -0.06
HDAC3-210ENST00000490808 ZNF335Q9H4Z2 1342 aaPredicted RBP14.65□□□□□ -0.06
HDAC3-210ENST00000490808 PLA2R1Q13018 1463 aa14.64□□□□□ -0.07
HDAC3-210ENST00000490808 SPHKAPQ2M3C7 1700 aa14.64□□□□□ -0.07
HDAC3-210ENST00000490808 PPP1R15AO75807 674 aaPredicted RBP14.64□□□□□ -0.07
HDAC3-210ENST00000490808 FBXO31Q5XUX0 539 aaPredicted RBP14.63□□□□□ -0.07
HDAC3-210ENST00000490808 THEMISQ8N1K5 641 aaPredicted RBP14.63□□□□□ -0.07
HDAC3-210ENST00000490808 NCKAP5LQ9HCH0 1330 aa14.63□□□□□ -0.07
HDAC3-210ENST00000490808 UGGT1Q9NYU2 1555 aa14.62□□□□□ -0.07
HDAC3-210ENST00000490808 PIK3C2BO00750 1634 aa14.62□□□□□ -0.07
HDAC3-210ENST00000490808 ANKRD30BQ9BXX2 1392 aa14.61□□□□□ -0.07
HDAC3-210ENST00000490808 DIEXFQ68CQ4 756 aaKnown RBP14.61□□□□□ -0.07
HDAC3-210ENST00000490808 SYNMO15061 1565 aa14.6□□□□□ -0.07
HDAC3-210ENST00000490808 PKD2Q13563 968 aa14.6□□□□□ -0.07
HDAC3-210ENST00000490808 TRPM2O94759 1503 aa14.6□□□□□ -0.07
HDAC3-210ENST00000490808 MED1Q15648 1581 aaPredicted RBP14.6□□□□□ -0.07
HDAC3-210ENST00000490808 UBR1Q8IWV7 1749 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms