RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 ANKLE2Q86XL3 938 aa22.8■■□□□ 1.24
EXOSC3-207ENST00000490516 CCDC18Q5T9S5 1454 aa22.79■■□□□ 1.24
EXOSC3-207ENST00000490516 RNF17Q9BXT8 1623 aaKnown RBP22.79■■□□□ 1.24
EXOSC3-207ENST00000490516 GPATCH8Q9UKJ3 1502 aaKnown RBP22.78■■□□□ 1.24
EXOSC3-207ENST00000490516 NPHP4O75161 1426 aaPredicted RBP22.78■■□□□ 1.24
EXOSC3-207ENST00000490516 LRRC7Q96NW7 1537 aa22.77■■□□□ 1.24
EXOSC3-207ENST00000490516 IQGAP1P46940 1657 aa22.77■■□□□ 1.24
EXOSC3-207ENST00000490516 DEPDC5O75140 1603 aa22.76■■□□□ 1.23
EXOSC3-207ENST00000490516 MED14O60244 1454 aa22.75■■□□□ 1.23
EXOSC3-207ENST00000490516 KIAA1107Q9UPP5 1409 aa22.74■■□□□ 1.23
EXOSC3-207ENST00000490516 POTEAQ6S8J7 498 aa22.74■■□□□ 1.23
EXOSC3-207ENST00000490516 CASKIN1Q8WXD9 1431 aa22.74■■□□□ 1.23
EXOSC3-207ENST00000490516 SYNMO15061 1565 aa22.72■■□□□ 1.23
EXOSC3-207ENST00000490516 PZPP20742 1482 aa22.72■■□□□ 1.23
EXOSC3-207ENST00000490516 THEMISQ8N1K5 641 aaPredicted RBP22.71■■□□□ 1.23
EXOSC3-207ENST00000490516 PLEKHH2Q8IVE3 1493 aa22.71■■□□□ 1.23
EXOSC3-207ENST00000490516 UGGT1Q9NYU2 1555 aa22.71■■□□□ 1.23
EXOSC3-207ENST00000490516 SETD1AO15047 1707 aaKnown RBP22.71■■□□□ 1.23
EXOSC3-207ENST00000490516 CFDP1Q9UEE9 299 aaPredicted RBP22.68■■□□□ 1.22
EXOSC3-207ENST00000490516 FAM135AQ9P2D6 1515 aa22.67■■□□□ 1.22
EXOSC3-207ENST00000490516 KDM5DQ9BY66 1539 aa22.66■■□□□ 1.22
EXOSC3-207ENST00000490516 XIRP1Q702N8 1843 aaKnown RBP22.66■■□□□ 1.22
EXOSC3-207ENST00000490516 NLRP1Q9C000 1473 aa22.66■■□□□ 1.22
EXOSC3-207ENST00000490516 MIA2Q96PC5 1412 aa22.65■■□□□ 1.22
EXOSC3-207ENST00000490516 ZC3H13Q5T200 1668 aaKnown RBP22.63■■□□□ 1.21
EXOSC3-207ENST00000490516 DHX29Q7Z478 1369 aaKnown RBP22.63■■□□□ 1.21
EXOSC3-207ENST00000490516 KIF3BO15066 747 aa22.62■■□□□ 1.21
EXOSC3-207ENST00000490516 CCNB3Q8WWL7 1395 aa22.61■■□□□ 1.21
EXOSC3-207ENST00000490516 ZNF644Q9H582 1327 aaPredicted RBP22.6■■□□□ 1.21
EXOSC3-207ENST00000490516 FYCO1Q9BQS8 1478 aa22.6■■□□□ 1.21
EXOSC3-207ENST00000490516 WASHC2CQ9Y4E1 1318 aa22.59■■□□□ 1.21
EXOSC3-207ENST00000490516 MBD5Q9P267 1494 aa22.58■■□□□ 1.2
EXOSC3-207ENST00000490516 RTEL1-TNFRSF6BF6WH68 1400 aa22.57■■□□□ 1.2
EXOSC3-207ENST00000490516 FAM135BQ49AJ0 1406 aa22.52■■□□□ 1.2
EXOSC3-207ENST00000490516 TIAM1Q13009 1591 aa22.5■■□□□ 1.19
EXOSC3-207ENST00000490516 ROBO1Q9Y6N7 1651 aa22.5■■□□□ 1.19
EXOSC3-207ENST00000490516 UBR1Q8IWV7 1749 aa22.5■■□□□ 1.19
EXOSC3-207ENST00000490516 CFAP65Q6ZU64 1925 aaKnown RBP22.49■■□□□ 1.19
EXOSC3-207ENST00000490516 SCAF11Q99590 1463 aaKnown RBP22.47■■□□□ 1.19
EXOSC3-207ENST00000490516 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.18
EXOSC3-207ENST00000490516 LTKP29376 864 aa22.44■■□□□ 1.18
EXOSC3-207ENST00000490516 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
EXOSC3-207ENST00000490516 UPF1Q92900 1129 aaKnown RBP eCLIP22.44■■□□□ 1.18
EXOSC3-207ENST00000490516 ERVK-7P63135 1459 aa22.43■■□□□ 1.18
EXOSC3-207ENST00000490516 ABCC3O15438 1527 aa22.41■■□□□ 1.18
EXOSC3-207ENST00000490516 NCOA2Q15596 1464 aa22.41■■□□□ 1.18
EXOSC3-207ENST00000490516 CCDC141Q6ZP82 1450 aa22.41■■□□□ 1.18
EXOSC3-207ENST00000490516 TXNDC2Q86VQ3 553 aa22.39■■□□□ 1.17
EXOSC3-207ENST00000490516 PHLPP1O60346 1717 aa22.39■■□□□ 1.17
EXOSC3-207ENST00000490516 TMEM94Q12767 1356 aa22.38■■□□□ 1.17
EXOSC3-207ENST00000490516 ARHGAP23Q9P227 1491 aa22.38■■□□□ 1.17
EXOSC3-207ENST00000490516 SLIT1O75093 1534 aa22.37■■□□□ 1.17
EXOSC3-207ENST00000490516 CEP152O94986 1710 aa22.37■■□□□ 1.17
EXOSC3-207ENST00000490516 RBM33Q96EV2 1170 aaKnown RBP22.36■■□□□ 1.17
EXOSC3-207ENST00000490516 MAP3K1Q13233 1512 aa22.36■■□□□ 1.17
EXOSC3-207ENST00000490516 CAMSAP2Q08AD1 1489 aa22.34■■□□□ 1.17
EXOSC3-207ENST00000490516 TRIM52Q96A61 297 aa22.34■■□□□ 1.17
EXOSC3-207ENST00000490516 EHBP1L1Q8N3D4 1523 aa22.32■■□□□ 1.16
EXOSC3-207ENST00000490516 LRRC9Q6ZRR7 1453 aa22.31■■□□□ 1.16
EXOSC3-207ENST00000490516 JCADQ9P266 1359 aa22.31■■□□□ 1.16
EXOSC3-207ENST00000490516 MROH1Q8NDA8 1641 aa22.31■■□□□ 1.16
EXOSC3-207ENST00000490516 EID1Q9Y6B2 187 aa22.3■■□□□ 1.16
EXOSC3-207ENST00000490516 LRP6O75581 1613 aa22.29■■□□□ 1.16
EXOSC3-207ENST00000490516 PROSER2Q86WR7 435 aaPredicted RBP22.29■■□□□ 1.16
EXOSC3-207ENST00000490516 CEP162Q5TB80 1403 aa22.29■■□□□ 1.16
EXOSC3-207ENST00000490516 RSPH4AQ5TD94 716 aa22.28■■□□□ 1.16
EXOSC3-207ENST00000490516 KCNA6P17658 529 aa22.27■■□□□ 1.16
EXOSC3-207ENST00000490516 PIK3C2BO00750 1634 aa22.27■■□□□ 1.16
EXOSC3-207ENST00000490516 COL16A1Q07092 1604 aaPredicted RBP22.27■■□□□ 1.16
EXOSC3-207ENST00000490516 ARHGEF5Q12774 1597 aa22.26■■□□□ 1.15
EXOSC3-207ENST00000490516 EIF2AK4Q9P2K8 1649 aaKnown RBP22.26■■□□□ 1.15
EXOSC3-207ENST00000490516 PRDM15P57071 1507 aaPredicted RBP22.25■■□□□ 1.15
EXOSC3-207ENST00000490516 TSPY4P0CV99 314 aa22.24■■□□□ 1.15
EXOSC3-207ENST00000490516 TSPY10P0CW01 314 aa22.24■■□□□ 1.15
EXOSC3-207ENST00000490516 MEX3CQ5U5Q3 659 aaKnown RBP22.23■■□□□ 1.15
EXOSC3-207ENST00000490516 ZNF772Q68DY9 489 aaPredicted RBP22.23■■□□□ 1.15
EXOSC3-207ENST00000490516 SLC26A8Q96RN1 970 aa22.23■■□□□ 1.15
EXOSC3-207ENST00000490516 SLAIN2Q9P270 581 aa22.23■■□□□ 1.15
EXOSC3-207ENST00000490516 TMEM2Q9UHN6 1383 aa22.23■■□□□ 1.15
EXOSC3-207ENST00000490516 SRCAPQ6ZRS2 3230 aa22.22■■□□□ 1.15
EXOSC3-207ENST00000490516 TET3O43151 1660 aa22.21■■□□□ 1.15
EXOSC3-207ENST00000490516 MSH6P52701 1360 aa22.21■■□□□ 1.15
EXOSC3-207ENST00000490516 NWD1Q149M9 1564 aa22.2■■□□□ 1.14
EXOSC3-207ENST00000490516 MAST1Q9Y2H9 1570 aa22.18■■□□□ 1.14
EXOSC3-207ENST00000490516 NKTRP30414 1462 aaKnown RBP22.18■■□□□ 1.14
EXOSC3-207ENST00000490516 SPATA31A6Q5VVP1 1343 aa22.18■■□□□ 1.14
EXOSC3-207ENST00000490516 RXRBP28702 533 aa22.18■■□□□ 1.14
EXOSC3-207ENST00000490516 STAG3Q9UJ98 1225 aa22.16■■□□□ 1.14
EXOSC3-207ENST00000490516 SHPRHQ149N8 1683 aa22.15■■□□□ 1.14
EXOSC3-207ENST00000490516 EFCAB6Q5THR3 1501 aa22.15■■□□□ 1.14
EXOSC3-207ENST00000490516 ARHGAP31Q2M1Z3 1444 aa22.14■■□□□ 1.14
EXOSC3-207ENST00000490516 FGD6Q6ZV73 1430 aa22.14■■□□□ 1.14
EXOSC3-207ENST00000490516 KDM5AP29375 1690 aaKnown RBP22.14■■□□□ 1.14
EXOSC3-207ENST00000490516 CDK12Q9NYV4 1490 aaPredicted RBP22.13■■□□□ 1.13
EXOSC3-207ENST00000490516 CHD2O14647 1828 aaKnown RBP22.1■■□□□ 1.13
EXOSC3-207ENST00000490516 IDI1Q13907 227 aa22.08■■□□□ 1.13
EXOSC3-207ENST00000490516 AHDC1Q5TGY3 1603 aaPredicted RBP22.08■■□□□ 1.13
EXOSC3-207ENST00000490516 DUOX2Q9NRD8 1548 aa22.07■■□□□ 1.12
EXOSC3-207ENST00000490516 NUTM2BA6NNL0 878 aaPredicted RBP22.06■■□□□ 1.12
EXOSC3-207ENST00000490516 NUTM2EB1AL46 878 aaPredicted RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms