RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 TTLL13PA6NNM8 815 aa9.38□□□□□ -0.91
SF3A3-208ENST00000489537 MAMSTRQ6ZN01 415 aa9.38□□□□□ -0.91
SF3A3-208ENST00000489537 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
SF3A3-208ENST00000489537 SUPT6HQ7KZ85 1726 aaKnown RBP9.37□□□□□ -0.91
SF3A3-208ENST00000489537 PYGBP11216 843 aa9.37□□□□□ -0.91
SF3A3-208ENST00000489537 IFNL1Q8IU54 200 aa9.37□□□□□ -0.91
SF3A3-208ENST00000489537 MYOM3Q5VTT5 1437 aa9.37□□□□□ -0.91
SF3A3-208ENST00000489537 ADGRL1O94910 1474 aa9.36□□□□□ -0.91
SF3A3-208ENST00000489537 NUP153P49790 1475 aaKnown RBP9.36□□□□□ -0.91
SF3A3-208ENST00000489537 SEC24BO95487 1268 aa9.36□□□□□ -0.91
SF3A3-208ENST00000489537 CD109Q6YHK3 1445 aa9.36□□□□□ -0.91
SF3A3-208ENST00000489537 FGD6Q6ZV73 1430 aa9.36□□□□□ -0.91
SF3A3-208ENST00000489537 MAGI3Q5TCQ9 1506 aa9.35□□□□□ -0.91
SF3A3-208ENST00000489537 PHLDB1Q86UU1 1377 aa9.35□□□□□ -0.91
SF3A3-208ENST00000489537 RAPGEF6Q8TEU7 1601 aa9.34□□□□□ -0.91
SF3A3-208ENST00000489537 NCOA2Q15596 1464 aa9.34□□□□□ -0.91
SF3A3-208ENST00000489537 POTEB2H3BUK9 544 aa9.34□□□□□ -0.91
SF3A3-208ENST00000489537 TMEM106CQ9BVX2 250 aa9.34□□□□□ -0.91
SF3A3-208ENST00000489537 TRIM35Q9UPQ4 493 aa9.34□□□□□ -0.91
SF3A3-208ENST00000489537 SETD5Q9C0A6 1442 aa9.33□□□□□ -0.92
SF3A3-208ENST00000489537 FAM50AQ14320 339 aaKnown RBP9.33□□□□□ -0.92
SF3A3-208ENST00000489537 IER5LQ5T953 404 aa9.33□□□□□ -0.92
SF3A3-208ENST00000489537 SPOCK2Q92563 424 aa9.33□□□□□ -0.92
SF3A3-208ENST00000489537 OTUD5Q96G74 571 aa9.33□□□□□ -0.92
SF3A3-208ENST00000489537 SCUBE2Q9NQ36 999 aa9.33□□□□□ -0.92
SF3A3-208ENST00000489537 TIMELESSQ9UNS1 1208 aa9.32□□□□□ -0.92
SF3A3-208ENST00000489537 TEX14Q8IWB6 1497 aa9.32□□□□□ -0.92
SF3A3-208ENST00000489537 TROQ12816 1431 aaPredicted RBP9.31□□□□□ -0.92
SF3A3-208ENST00000489537 AKNAQ7Z591 1439 aa9.31□□□□□ -0.92
SF3A3-208ENST00000489537 PLEKHD1A6NEE1 506 aa9.31□□□□□ -0.92
SF3A3-208ENST00000489537 ZNF467Q7Z7K2 595 aaPredicted RBP9.31□□□□□ -0.92
SF3A3-208ENST00000489537 ABCA9Q8IUA7 1624 aa9.31□□□□□ -0.92
SF3A3-208ENST00000489537 TCOF1Q13428 1488 aaKnown RBP9.3□□□□□ -0.92
SF3A3-208ENST00000489537 RAPGEF3O95398 923 aa9.3□□□□□ -0.92
SF3A3-208ENST00000489537 FRMPD1Q5SYB0 1578 aa9.29□□□□□ -0.92
SF3A3-208ENST00000489537 CDK13Q14004 1512 aaKnown RBP9.28□□□□□ -0.92
SF3A3-208ENST00000489537 ARAP3Q8WWN8 1544 aa9.28□□□□□ -0.92
SF3A3-208ENST00000489537 IFNLR1Q8IU57 520 aaPredicted RBP9.28□□□□□ -0.92
SF3A3-208ENST00000489537 CIZ1Q9ULV3 898 aaPredicted RBP9.28□□□□□ -0.92
SF3A3-208ENST00000489537 RSPH4AQ5TD94 716 aa9.27□□□□□ -0.93
SF3A3-208ENST00000489537 PCDHB8Q9UN66 801 aa9.27□□□□□ -0.93
SF3A3-208ENST00000489537 HFM1A2PYH4 1435 aa9.27□□□□□ -0.93
SF3A3-208ENST00000489537 CHRM1P11229 460 aaPredicted RBP9.26□□□□□ -0.93
SF3A3-208ENST00000489537 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.26□□□□□ -0.93
SF3A3-208ENST00000489537 ROCK1Q13464 1354 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 DHX57Q6P158 1386 aaKnown RBP9.25□□□□□ -0.93
SF3A3-208ENST00000489537 RAB3GAP2Q9H2M9 1393 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 TTC37Q6PGP7 1564 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 PTPN23Q9H3S7 1636 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 PLCG2P16885 1265 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 GOLGA2Q08379 1002 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 SIGLEC1Q9BZZ2 1709 aa9.25□□□□□ -0.93
SF3A3-208ENST00000489537 ITGAEP38570 1179 aa9.24□□□□□ -0.93
SF3A3-208ENST00000489537 ITSN2Q9NZM3 1697 aa9.23□□□□□ -0.93
SF3A3-208ENST00000489537 LRRIQ1Q96JM4 1722 aa9.23□□□□□ -0.93
SF3A3-208ENST00000489537 CFDP1Q9UEE9 299 aaPredicted RBP9.23□□□□□ -0.93
SF3A3-208ENST00000489537 HECW2Q9P2P5 1572 aa9.23□□□□□ -0.93
SF3A3-208ENST00000489537 KIF14Q15058 1648 aa9.23□□□□□ -0.93
SF3A3-208ENST00000489537 POTEFA5A3E0 1075 aa9.22□□□□□ -0.93
SF3A3-208ENST00000489537 COLQQ9Y215 455 aaPredicted RBP9.22□□□□□ -0.93
SF3A3-208ENST00000489537 NEO1Q92859 1461 aa9.21□□□□□ -0.93
SF3A3-208ENST00000489537 YEATS2Q9ULM3 1422 aa9.21□□□□□ -0.94
SF3A3-208ENST00000489537 ADAMTSL3P82987 1691 aa9.2□□□□□ -0.94
SF3A3-208ENST00000489537 RICTORQ6R327 1708 aa9.2□□□□□ -0.94
SF3A3-208ENST00000489537 POTEJP0CG39 1038 aa9.2□□□□□ -0.94
SF3A3-208ENST00000489537 PLEKHH2Q8IVE3 1493 aa9.2□□□□□ -0.94
SF3A3-208ENST00000489537 FANCAO15360 1455 aa9.19□□□□□ -0.94
SF3A3-208ENST00000489537 TSPY4P0CV99 314 aa9.18□□□□□ -0.94
SF3A3-208ENST00000489537 TSPY10P0CW01 314 aa9.18□□□□□ -0.94
SF3A3-208ENST00000489537 MKRN3Q13064 507 aaKnown RBP9.18□□□□□ -0.94
SF3A3-208ENST00000489537 NAIPQ13075 1403 aa9.18□□□□□ -0.94
SF3A3-208ENST00000489537 OCEL1Q9H607 264 aa9.18□□□□□ -0.94
SF3A3-208ENST00000489537 GPATCH8Q9UKJ3 1502 aaKnown RBP9.17□□□□□ -0.94
SF3A3-208ENST00000489537 PTPRMP28827 1452 aa9.17□□□□□ -0.94
SF3A3-208ENST00000489537 SHANK2Q9UPX8 1470 aa9.17□□□□□ -0.94
SF3A3-208ENST00000489537 DAPK1P53355 1430 aa9.17□□□□□ -0.94
SF3A3-208ENST00000489537 ANKRD30AQ9BXX3 1397 aa9.17□□□□□ -0.94
SF3A3-208ENST00000489537 IRX5P78411 483 aaPredicted RBP9.17□□□□□ -0.94
SF3A3-208ENST00000489537 ILDR1Q86SU0 546 aaPredicted RBP9.17□□□□□ -0.94
SF3A3-208ENST00000489537 DNMT1P26358 1616 aaKnown RBP9.16□□□□□ -0.94
SF3A3-208ENST00000489537 MADDQ8WXG6 1647 aa9.16□□□□□ -0.94
SF3A3-208ENST00000489537 DENND4BO75064 1496 aaPredicted RBP9.16□□□□□ -0.94
SF3A3-208ENST00000489537 PLCH2O75038 1416 aa9.16□□□□□ -0.94
SF3A3-208ENST00000489537 ZNF316A6NFI3 1004 aaPredicted RBP9.16□□□□□ -0.94
SF3A3-208ENST00000489537 PSEN1P49768 467 aa9.16□□□□□ -0.94
SF3A3-208ENST00000489537 PDAP1Q13442 181 aaKnown RBP9.16□□□□□ -0.94
SF3A3-208ENST00000489537 BCORL1Q5H9F3 1711 aa9.16□□□□□ -0.94
SF3A3-208ENST00000489537 ARHGEF40Q8TER5 1519 aa9.15□□□□□ -0.94
SF3A3-208ENST00000489537 ADGRL2O95490 1459 aa9.15□□□□□ -0.95
SF3A3-208ENST00000489537 CAMSAP2Q08AD1 1489 aa9.15□□□□□ -0.95
SF3A3-208ENST00000489537 SCAPERQ9BY12 1400 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 KIAA1107Q9UPP5 1409 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 ZMYM4Q5VZL5 1548 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 ARHGEF12Q9NZN5 1544 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 ABCC5O15440 1437 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 POGZQ7Z3K3 1410 aa9.14□□□□□ -0.95
SF3A3-208ENST00000489537 GCC2Q8IWJ2 1684 aa9.13□□□□□ -0.95
SF3A3-208ENST00000489537 AFAP1Q8N556 730 aa9.13□□□□□ -0.95
SF3A3-208ENST00000489537 ARHGEF5Q12774 1597 aa9.12□□□□□ -0.95
SF3A3-208ENST00000489537 EFCAB2Q5VUJ9 269 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms