RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 CEP170BQ9Y4F5 1589 aaPredicted RBP15.49■□□□□ 0.07
SSBP1-212ENST00000489378 TOM1O60784 492 aa15.47■□□□□ 0.07
SSBP1-212ENST00000489378 ZBTB12Q9Y330 459 aaPredicted RBP15.47■□□□□ 0.07
SSBP1-212ENST00000489378 CLTCQ00610 1675 aaKnown RBP15.46■□□□□ 0.07
SSBP1-212ENST00000489378 PTPRKQ15262 1439 aa15.46■□□□□ 0.07
SSBP1-212ENST00000489378 PREX2Q70Z35 1606 aa15.45■□□□□ 0.06
SSBP1-212ENST00000489378 CLIP1P30622 1438 aa15.45■□□□□ 0.06
SSBP1-212ENST00000489378 FMN1Q68DA7 1419 aa15.43■□□□□ 0.06
SSBP1-212ENST00000489378 LRRIQ1Q96JM4 1722 aa15.43■□□□□ 0.06
SSBP1-212ENST00000489378 CPS1P31327 1500 aa15.43■□□□□ 0.06
SSBP1-212ENST00000489378 ALKQ9UM73 1620 aa15.42■□□□□ 0.06
SSBP1-212ENST00000489378 SAMD9LQ8IVG5 1584 aa15.42■□□□□ 0.06
SSBP1-212ENST00000489378 SHANK2Q9UPX8 1470 aa15.41■□□□□ 0.06
SSBP1-212ENST00000489378 EEA1Q15075 1411 aa15.41■□□□□ 0.06
SSBP1-212ENST00000489378 DNMT1P26358 1616 aaKnown RBP15.4■□□□□ 0.06
SSBP1-212ENST00000489378 NEURL4Q96JN8 1562 aa15.39■□□□□ 0.05
SSBP1-212ENST00000489378 ARHGAP35Q9NRY4 1499 aa15.39■□□□□ 0.05
SSBP1-212ENST00000489378 A2ML1A8K2U0 1454 aa15.38■□□□□ 0.05
SSBP1-212ENST00000489378 CHRDL2Q6WN34 429 aa15.38■□□□□ 0.05
SSBP1-212ENST00000489378 RGS17Q9UGC6 210 aaPredicted RBP15.37■□□□□ 0.05
SSBP1-212ENST00000489378 PLXNC1O60486 1568 aa15.37■□□□□ 0.05
SSBP1-212ENST00000489378 POLR1AO95602 1720 aaPredicted RBP15.37■□□□□ 0.05
SSBP1-212ENST00000489378 CDC42BPAQ5VT25 1732 aa15.37■□□□□ 0.05
SSBP1-212ENST00000489378 SPAG9O60271 1321 aaKnown RBP15.37■□□□□ 0.05
SSBP1-212ENST00000489378 GGT6Q6P531 493 aa15.36■□□□□ 0.05
SSBP1-212ENST00000489378 AKT1S1Q96B36 256 aa15.36■□□□□ 0.05
SSBP1-212ENST00000489378 VWDEQ8N2E2 1590 aa15.36■□□□□ 0.05
SSBP1-212ENST00000489378 ZNF777Q9ULD5 760 aaPredicted RBP15.35■□□□□ 0.05
SSBP1-212ENST00000489378 SYCP2Q9BX26 1530 aa15.35■□□□□ 0.05
SSBP1-212ENST00000489378 EHMT2Q96KQ7 1210 aa15.34■□□□□ 0.05
SSBP1-212ENST00000489378 A2MP01023 1474 aa15.34■□□□□ 0.05
SSBP1-212ENST00000489378 HNRNPMP52272 730 aaKnown RBP eCLIP15.34■□□□□ 0.05
SSBP1-212ENST00000489378 ATP7AQ04656 1500 aa15.34■□□□□ 0.05
SSBP1-212ENST00000489378 INO80Q9ULG1 1556 aaPredicted RBP15.31■□□□□ 0.04
SSBP1-212ENST00000489378 UBTFP17480 764 aaKnown RBP15.3■□□□□ 0.04
SSBP1-212ENST00000489378 FBXO31Q5XUX0 539 aaPredicted RBP15.29■□□□□ 0.04
SSBP1-212ENST00000489378 TNRQ92752 1358 aa15.28■□□□□ 0.04
SSBP1-212ENST00000489378 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.28■□□□□ 0.04
SSBP1-212ENST00000489378 STRCP1A6NGW2 1772 aa15.28■□□□□ 0.04
SSBP1-212ENST00000489378 ANKLE2Q86XL3 938 aa15.27■□□□□ 0.04
SSBP1-212ENST00000489378 GPATCH8Q9UKJ3 1502 aaKnown RBP15.27■□□□□ 0.03
SSBP1-212ENST00000489378 NPHP4O75161 1426 aaPredicted RBP15.27■□□□□ 0.03
SSBP1-212ENST00000489378 LRRC7Q96NW7 1537 aa15.26■□□□□ 0.03
SSBP1-212ENST00000489378 CCDC18Q5T9S5 1454 aa15.25■□□□□ 0.03
SSBP1-212ENST00000489378 POTEAQ6S8J7 498 aa15.25■□□□□ 0.03
SSBP1-212ENST00000489378 MED14O60244 1454 aa15.24■□□□□ 0.03
SSBP1-212ENST00000489378 KIAA1107Q9UPP5 1409 aa15.24■□□□□ 0.03
SSBP1-212ENST00000489378 RNF17Q9BXT8 1623 aaKnown RBP15.24■□□□□ 0.03
SSBP1-212ENST00000489378 REM2Q8IYK8 340 aaPredicted RBP15.24■□□□□ 0.03
SSBP1-212ENST00000489378 ADGBQ8N7X0 1667 aa15.24■□□□□ 0.03
SSBP1-212ENST00000489378 CASKIN1Q8WXD9 1431 aa15.23■□□□□ 0.03
SSBP1-212ENST00000489378 DEPDC5O75140 1603 aa15.23■□□□□ 0.03
SSBP1-212ENST00000489378 IQGAP1P46940 1657 aa15.22■□□□□ 0.03
SSBP1-212ENST00000489378 PZPP20742 1482 aa15.21■□□□□ 0.03
SSBP1-212ENST00000489378 THEMISQ8N1K5 641 aaPredicted RBP15.21■□□□□ 0.03
SSBP1-212ENST00000489378 PLEKHH2Q8IVE3 1493 aa15.21■□□□□ 0.02
SSBP1-212ENST00000489378 CFDP1Q9UEE9 299 aaPredicted RBP15.2■□□□□ 0.02
SSBP1-212ENST00000489378 SYNMO15061 1565 aa15.2■□□□□ 0.02
SSBP1-212ENST00000489378 UGGT1Q9NYU2 1555 aa15.2■□□□□ 0.02
SSBP1-212ENST00000489378 MIA2Q96PC5 1412 aa15.18■□□□□ 0.02
SSBP1-212ENST00000489378 FAM135AQ9P2D6 1515 aa15.18■□□□□ 0.02
SSBP1-212ENST00000489378 SETD1AO15047 1707 aaKnown RBP15.18■□□□□ 0.02
SSBP1-212ENST00000489378 NLRP1Q9C000 1473 aa15.17■□□□□ 0.02
SSBP1-212ENST00000489378 DHX29Q7Z478 1369 aaKnown RBP15.17■□□□□ 0.02
SSBP1-212ENST00000489378 KDM5DQ9BY66 1539 aa15.16■□□□□ 0.02
SSBP1-212ENST00000489378 ZNF644Q9H582 1327 aaPredicted RBP15.16■□□□□ 0.02
SSBP1-212ENST00000489378 KIF3BO15066 747 aa15.16■□□□□ 0.02
SSBP1-212ENST00000489378 CCNB3Q8WWL7 1395 aa15.14■□□□□ 0.01
SSBP1-212ENST00000489378 WASHC2CQ9Y4E1 1318 aa15.14■□□□□ 0.01
SSBP1-212ENST00000489378 XIRP1Q702N8 1843 aaKnown RBP15.13■□□□□ 0.01
SSBP1-212ENST00000489378 ZC3H13Q5T200 1668 aaKnown RBP15.13■□□□□ 0.01
SSBP1-212ENST00000489378 MKRN4PQ13434 485 aaPredicted RBP15.13■□□□□ 0.01
SSBP1-212ENST00000489378 MBD5Q9P267 1494 aa15.13■□□□□ 0.01
SSBP1-212ENST00000489378 FYCO1Q9BQS8 1478 aa15.12■□□□□ 0.01
SSBP1-212ENST00000489378 RTEL1-TNFRSF6BF6WH68 1400 aa15.11■□□□□ 0.01
SSBP1-212ENST00000489378 FAM135BQ49AJ0 1406 aa15.1■□□□□ 0.01
SSBP1-212ENST00000489378 PITPNM1O00562 1244 aa15.08■□□□□ 0
SSBP1-212ENST00000489378 TIAM1Q13009 1591 aa15.06■□□□□ 0
SSBP1-212ENST00000489378 SCAF11Q99590 1463 aaKnown RBP15.05■□□□□ -0
SSBP1-212ENST00000489378 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
SSBP1-212ENST00000489378 SPDYE6P0CI01 402 aa15.05■□□□□ -0
SSBP1-212ENST00000489378 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
SSBP1-212ENST00000489378 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
SSBP1-212ENST00000489378 LTKP29376 864 aa15.04■□□□□ -0
SSBP1-212ENST00000489378 UPF1Q92900 1129 aaKnown RBP eCLIP15.04■□□□□ -0
SSBP1-212ENST00000489378 ROBO1Q9Y6N7 1651 aa15.04■□□□□ -0
SSBP1-212ENST00000489378 UBR1Q8IWV7 1749 aa15.03■□□□□ -0
SSBP1-212ENST00000489378 ERVK-7P63135 1459 aa15.03■□□□□ -0
SSBP1-212ENST00000489378 MTUS2Q5JR59 1369 aa15.03■□□□□ -0
SSBP1-212ENST00000489378 ABCC3O15438 1527 aa15.02■□□□□ -0
SSBP1-212ENST00000489378 NCOA2Q15596 1464 aa15.02□□□□□ -0.01
SSBP1-212ENST00000489378 CCDC141Q6ZP82 1450 aa15.01□□□□□ -0.01
SSBP1-212ENST00000489378 TMEM94Q12767 1356 aa15.01□□□□□ -0.01
SSBP1-212ENST00000489378 CFAP65Q6ZU64 1925 aaKnown RBP15.01□□□□□ -0.01
SSBP1-212ENST00000489378 TXNDC2Q86VQ3 553 aa15□□□□□ -0.01
SSBP1-212ENST00000489378 ARHGAP23Q9P227 1491 aa15□□□□□ -0.01
SSBP1-212ENST00000489378 SRCAPQ6ZRS2 3230 aa14.99□□□□□ -0.01
SSBP1-212ENST00000489378 RBM33Q96EV2 1170 aaKnown RBP14.99□□□□□ -0.01
SSBP1-212ENST00000489378 SLIT1O75093 1534 aa14.98□□□□□ -0.01
SSBP1-212ENST00000489378 FXR2P51116 673 aaKnown RBP eCLIP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms