RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CARMIL2Q6F5E8 1435 aa21.96■■□□□ 1.11
NPHP4-209ENST00000489180 CRBNQ96SW2 442 aa21.96■■□□□ 1.11
NPHP4-209ENST00000489180 NCBP3Q53F19 620 aaKnown RBP21.96■■□□□ 1.11
NPHP4-209ENST00000489180 GORABQ5T7V8 394 aa21.94■■□□□ 1.1
NPHP4-209ENST00000489180 TERF2IPQ9NYB0 399 aa21.94■■□□□ 1.1
NPHP4-209ENST00000489180 RRP1P56182 461 aaKnown RBP21.93■■□□□ 1.1
NPHP4-209ENST00000489180 EFCAB2Q5VUJ9 269 aa21.93■■□□□ 1.1
NPHP4-209ENST00000489180 FAM161AQ3B820 660 aa21.93■■□□□ 1.1
NPHP4-209ENST00000489180 GPATCH3Q96I76 525 aa21.93■■□□□ 1.1
NPHP4-209ENST00000489180 CENPQQ7L2Z9 268 aaPredicted RBP21.93■■□□□ 1.1
NPHP4-209ENST00000489180 ELL2O00472 640 aaPredicted RBP21.92■■□□□ 1.1
NPHP4-209ENST00000489180 PRKRIP1Q9H875 184 aaPredicted RBP21.92■■□□□ 1.1
NPHP4-209ENST00000489180 TRAK1Q9UPV9 953 aa21.92■■□□□ 1.1
NPHP4-209ENST00000489180 TPM4P67936 248 aa21.91■■□□□ 1.1
NPHP4-209ENST00000489180 RAPGEF2Q9Y4G8 1499 aa21.91■■□□□ 1.1
NPHP4-209ENST00000489180 ST18O60284 1047 aa21.9■■□□□ 1.1
NPHP4-209ENST00000489180 FOXD4L6Q3SYB3 417 aaPredicted RBP21.9■■□□□ 1.1
NPHP4-209ENST00000489180 FOXD4L3Q6VB84 417 aaPredicted RBP21.9■■□□□ 1.1
NPHP4-209ENST00000489180 PHLDB1Q86UU1 1377 aa21.89■■□□□ 1.1
NPHP4-209ENST00000489180 NUTM2FA1L443 756 aa21.89■■□□□ 1.09
NPHP4-209ENST00000489180 GSE1Q14687 1217 aa21.89■■□□□ 1.09
NPHP4-209ENST00000489180 TRHP20396 242 aaPredicted RBP21.89■■□□□ 1.09
NPHP4-209ENST00000489180 LTV1Q96GA3 475 aaPredicted RBP21.89■■□□□ 1.09
NPHP4-209ENST00000489180 ANKRD45Q5TZF3 282 aa21.88■■□□□ 1.09
NPHP4-209ENST00000489180 CREBRFQ8IUR6 639 aa21.88■■□□□ 1.09
NPHP4-209ENST00000489180 DDX11L8A8MPP1 907 aa21.88■■□□□ 1.09
NPHP4-209ENST00000489180 COG6Q9Y2V7 657 aa21.87■■□□□ 1.09
NPHP4-209ENST00000489180 CSPP1Q1MSJ5 1256 aa21.86■■□□□ 1.09
NPHP4-209ENST00000489180 WIZO95785 1651 aa21.86■■□□□ 1.09
NPHP4-209ENST00000489180 NOC3LQ8WTT2 800 aaKnown RBP21.86■■□□□ 1.09
NPHP4-209ENST00000489180 ZBED9Q6R2W3 1325 aa21.86■■□□□ 1.09
NPHP4-209ENST00000489180 USP35Q9P2H5 1018 aa21.86■■□□□ 1.09
NPHP4-209ENST00000489180 TAF7LQ5H9L4 462 aa21.86■■□□□ 1.09
NPHP4-209ENST00000489180 RILPL2Q969X0 211 aa21.85■■□□□ 1.09
NPHP4-209ENST00000489180 DDX49Q9Y6V7 483 aaKnown RBP21.85■■□□□ 1.09
NPHP4-209ENST00000489180 KIF16BQ96L93 1317 aa21.84■■□□□ 1.09
NPHP4-209ENST00000489180 CCDC9Q9Y3X0 531 aaKnown RBP21.83■■□□□ 1.08
NPHP4-209ENST00000489180 AMPHP49418 695 aa21.82■■□□□ 1.08
NPHP4-209ENST00000489180 LMOD3Q0VAK6 560 aa21.82■■□□□ 1.08
NPHP4-209ENST00000489180 PHF14O94880 888 aa21.82■■□□□ 1.08
NPHP4-209ENST00000489180 HSP90AA2PQ14568 343 aaPredicted RBP21.81■■□□□ 1.08
NPHP4-209ENST00000489180 NGDNQ8NEJ9 315 aaKnown RBP21.81■■□□□ 1.08
NPHP4-209ENST00000489180 TNNT3P45378 269 aaPredicted RBP21.8■■□□□ 1.08
NPHP4-209ENST00000489180 ZKSCAN2Q63HK3 967 aa21.8■■□□□ 1.08
NPHP4-209ENST00000489180 E9PSI1 815 aa21.8■■□□□ 1.08
NPHP4-209ENST00000489180 RASSF8Q8NHQ8 419 aa21.8■■□□□ 1.08
NPHP4-209ENST00000489180 WASHC2CQ9Y4E1 1318 aa21.8■■□□□ 1.08
NPHP4-209ENST00000489180 CCDC18Q5T9S5 1454 aa21.8■■□□□ 1.08
NPHP4-209ENST00000489180 PDE4CQ08493 712 aa21.79■■□□□ 1.08
NPHP4-209ENST00000489180 USP47Q96K76 1375 aa21.79■■□□□ 1.08
NPHP4-209ENST00000489180 RUSC2Q8N2Y8 1516 aa21.79■■□□□ 1.08
NPHP4-209ENST00000489180 TOMM22Q9NS69 142 aa21.78■■□□□ 1.08
NPHP4-209ENST00000489180 APAF1O14727 1248 aa21.78■■□□□ 1.08
NPHP4-209ENST00000489180 CCDC144AA2RUR9 1427 aa21.78■■□□□ 1.08
NPHP4-209ENST00000489180 FANCIQ9NVI1 1328 aa21.76■■□□□ 1.07
NPHP4-209ENST00000489180 SF3A1Q15459 793 aaKnown RBP21.76■■□□□ 1.07
NPHP4-209ENST00000489180 CHMP4AQ9BY43 222 aa21.76■■□□□ 1.07
NPHP4-209ENST00000489180 RSPH6AQ9H0K4 717 aa21.75■■□□□ 1.07
NPHP4-209ENST00000489180 HDAC5Q9UQL6 1122 aa21.75■■□□□ 1.07
NPHP4-209ENST00000489180 TOP2AP11388 1531 aaKnown RBP21.74■■□□□ 1.07
NPHP4-209ENST00000489180 SMARCA2P51531 1590 aa21.74■■□□□ 1.07
NPHP4-209ENST00000489180 H3BQV1 296 aa21.74■■□□□ 1.07
NPHP4-209ENST00000489180 IFFO2Q5TF58 517 aa21.74■■□□□ 1.07
NPHP4-209ENST00000489180 GOLGA6L1Q8N7Z2 621 aa21.73■■□□□ 1.07
NPHP4-209ENST00000489180 CCDC34Q96HJ3 373 aa21.73■■□□□ 1.07
NPHP4-209ENST00000489180 CGNL1Q0VF96 1302 aa21.71■■□□□ 1.07
NPHP4-209ENST00000489180 PDS5BQ9NTI5 1447 aa21.71■■□□□ 1.07
NPHP4-209ENST00000489180 SKOR2Q2VWA4 1001 aaPredicted RBP21.71■■□□□ 1.07
NPHP4-209ENST00000489180 A0A0U1RQG5 324 aaPredicted RBP21.68■■□□□ 1.06
NPHP4-209ENST00000489180 FAM184AQ8NB25 1140 aa21.68■■□□□ 1.06
NPHP4-209ENST00000489180 RSPH4AQ5TD94 716 aa21.67■■□□□ 1.06
NPHP4-209ENST00000489180 PES1O00541 588 aaKnown RBP21.67■■□□□ 1.06
NPHP4-209ENST00000489180 VSIG10Q8N0Z9 540 aa21.66■■□□□ 1.06
NPHP4-209ENST00000489180 NECTIN2Q92692 538 aa21.66■■□□□ 1.06
NPHP4-209ENST00000489180 TPM3P06753 285 aa21.66■■□□□ 1.06
NPHP4-209ENST00000489180 KIF3AQ9Y496 699 aa21.66■■□□□ 1.06
NPHP4-209ENST00000489180 GOLGA6L19H0YKK7 550 aa21.65■■□□□ 1.06
NPHP4-209ENST00000489180 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.65■■□□□ 1.06
NPHP4-209ENST00000489180 CCAR2Q8N163 923 aaKnown RBP21.65■■□□□ 1.06
NPHP4-209ENST00000489180 MCTP1Q6DN14 999 aa21.65■■□□□ 1.06
NPHP4-209ENST00000489180 COG3Q96JB2 828 aa21.64■■□□□ 1.06
NPHP4-209ENST00000489180 EID1Q9Y6B2 187 aa21.64■■□□□ 1.06
NPHP4-209ENST00000489180 MINK1Q8N4C8 1332 aaPredicted RBP21.64■■□□□ 1.06
NPHP4-209ENST00000489180 ZNF592Q92610 1267 aa21.64■■□□□ 1.05
NPHP4-209ENST00000489180 BECN2A8MW95 431 aa21.63■■□□□ 1.05
NPHP4-209ENST00000489180 FRAT2O75474 233 aaPredicted RBP21.63■■□□□ 1.05
NPHP4-209ENST00000489180 DZIP1LQ8IYY4 767 aaKnown RBP21.63■■□□□ 1.05
NPHP4-209ENST00000489180 DIAPH3Q9NSV4 1193 aa21.63■■□□□ 1.05
NPHP4-209ENST00000489180 DDX19BQ9UMR2 479 aa21.63■■□□□ 1.05
NPHP4-209ENST00000489180 EIF2S2P20042 333 aaKnown RBP21.62■■□□□ 1.05
NPHP4-209ENST00000489180 ATP6V1DQ9Y5K8 247 aa21.62■■□□□ 1.05
NPHP4-209ENST00000489180 EVC2Q86UK5 1308 aa21.62■■□□□ 1.05
NPHP4-209ENST00000489180 NGEFQ8N5V2 710 aa21.62■■□□□ 1.05
NPHP4-209ENST00000489180 TPD52L1Q16890 204 aaPredicted RBP21.61■■□□□ 1.05
NPHP4-209ENST00000489180 RIPK4P57078 832 aa21.61■■□□□ 1.05
NPHP4-209ENST00000489180 ANO8Q9HCE9 1232 aaPredicted RBP21.6■■□□□ 1.05
NPHP4-209ENST00000489180 CHMP5Q9NZZ3 219 aa21.6■■□□□ 1.05
NPHP4-209ENST00000489180 JPH4Q96JJ6 628 aa21.59■■□□□ 1.05
NPHP4-209ENST00000489180 ANO2Q9NQ90 1003 aa21.59■■□□□ 1.05
NPHP4-209ENST00000489180 KIF7Q2M1P5 1343 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms