RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 FAM135AQ9P2D6 1515 aa38.86■■■■□ 3.81
HMGN1-217ENST00000489072 RNF17Q9BXT8 1623 aaKnown RBP38.85■■■■□ 3.81
HMGN1-217ENST00000489072 STRCQ7RTU9 1775 aa38.85■■■■□ 3.81
HMGN1-217ENST00000489072 EIF2AK4Q9P2K8 1649 aaKnown RBP38.85■■■■□ 3.81
HMGN1-217ENST00000489072 DUOX2Q9NRD8 1548 aa38.83■■■■□ 3.81
HMGN1-217ENST00000489072 MYO3AQ8NEV4 1616 aa38.8■■■■□ 3.8
HMGN1-217ENST00000489072 KIF15Q9NS87 1388 aa38.79■■■■□ 3.8
HMGN1-217ENST00000489072 WASHC2CQ9Y4E1 1318 aa38.78■■■■□ 3.8
HMGN1-217ENST00000489072 MROH1Q8NDA8 1641 aa38.77■■■■□ 3.8
HMGN1-217ENST00000489072 ZNF142P52746 1687 aaPredicted RBP38.75■■■■□ 3.79
HMGN1-217ENST00000489072 RRP7BPQ9NSQ0 103 aa38.75■■■■□ 3.79
HMGN1-217ENST00000489072 PZPP20742 1482 aa38.73■■■■□ 3.79
HMGN1-217ENST00000489072 ILDR1Q86SU0 546 aaPredicted RBP38.71■■■■□ 3.79
HMGN1-217ENST00000489072 ABCC3O15438 1527 aa38.71■■■■□ 3.79
HMGN1-217ENST00000489072 FAM50AQ14320 339 aaKnown RBP38.7■■■■□ 3.79
HMGN1-217ENST00000489072 FBXO31Q5XUX0 539 aaPredicted RBP38.7■■■■□ 3.79
HMGN1-217ENST00000489072 CHIC2Q9UKJ5 165 aa38.7■■■■□ 3.79
HMGN1-217ENST00000489072 CEP170BQ9Y4F5 1589 aaPredicted RBP38.7■■■■□ 3.79
HMGN1-217ENST00000489072 ZC3H13Q5T200 1668 aaKnown RBP38.69■■■■□ 3.78
HMGN1-217ENST00000489072 ERBINQ96RT1 1412 aa38.69■■■■□ 3.78
HMGN1-217ENST00000489072 CAMSAP1Q5T5Y3 1602 aa38.67■■■■□ 3.78
HMGN1-217ENST00000489072 NCOA1Q15788 1441 aa38.67■■■■□ 3.78
HMGN1-217ENST00000489072 CEP152O94986 1710 aa38.65■■■■□ 3.78
HMGN1-217ENST00000489072 ANKRD30AQ9BXX3 1397 aa38.65■■■■□ 3.78
HMGN1-217ENST00000489072 TNRQ92752 1358 aa38.63■■■■□ 3.77
HMGN1-217ENST00000489072 PPARGC1BQ86YN6 1023 aaKnown RBP38.63■■■■□ 3.77
HMGN1-217ENST00000489072 ADGRL2O95490 1459 aa38.61■■■■□ 3.77
HMGN1-217ENST00000489072 DMRT2Q9Y5R5 561 aa38.61■■■■□ 3.77
HMGN1-217ENST00000489072 PRDM15P57071 1507 aaPredicted RBP38.61■■■■□ 3.77
HMGN1-217ENST00000489072 A2ML1A8K2U0 1454 aa38.6■■■■□ 3.77
HMGN1-217ENST00000489072 DEPDC5O75140 1603 aa38.59■■■■□ 3.77
HMGN1-217ENST00000489072 PTPRTO14522 1441 aa38.57■■■■□ 3.77
HMGN1-217ENST00000489072 PLA2R1Q13018 1463 aa38.53■■■■□ 3.76
HMGN1-217ENST00000489072 SPATA31D1Q6ZQQ2 1576 aa38.51■■■■□ 3.76
HMGN1-217ENST00000489072 CFAP65Q6ZU64 1925 aaKnown RBP38.51■■■■□ 3.76
HMGN1-217ENST00000489072 NCKAP5LQ9HCH0 1330 aa38.5■■■■□ 3.75
HMGN1-217ENST00000489072 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.48■■■■□ 3.751e-6■■□□□ 12.8
HMGN1-217ENST00000489072 ERVK-7P63135 1459 aa38.47■■■■□ 3.75
HMGN1-217ENST00000489072 NLRP1Q9C000 1473 aa38.46■■■■□ 3.75
HMGN1-217ENST00000489072 FBXO41Q8TF61 875 aa38.44■■■■□ 3.74
HMGN1-217ENST00000489072 VWDEQ8N2E2 1590 aa38.43■■■■□ 3.74
HMGN1-217ENST00000489072 ARHGAP31Q2M1Z3 1444 aa38.42■■■■□ 3.74
HMGN1-217ENST00000489072 PKD2Q13563 968 aa38.41■■■■□ 3.74
HMGN1-217ENST00000489072 CERKQ8TCT0 537 aa38.41■■■■□ 3.74
HMGN1-217ENST00000489072 KANK1Q14678 1352 aa38.41■■■■□ 3.74
HMGN1-217ENST00000489072 ANKRD50Q9ULJ7 1429 aa38.39■■■■□ 3.74
HMGN1-217ENST00000489072 LMTK2Q8IWU2 1503 aa38.38■■■■□ 3.73
HMGN1-217ENST00000489072 UGGT1Q9NYU2 1555 aa38.37■■■■□ 3.73
HMGN1-217ENST00000489072 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.36■■■■□ 3.73
HMGN1-217ENST00000489072 POLR1AO95602 1720 aaPredicted RBP38.35■■■■□ 3.73
HMGN1-217ENST00000489072 ROCK1Q13464 1354 aa38.33■■■■□ 3.73
HMGN1-217ENST00000489072 LTBP4Q8N2S1 1624 aa38.31■■■■□ 3.72
HMGN1-217ENST00000489072 THEMISQ8N1K5 641 aaPredicted RBP38.3■■■■□ 3.72
HMGN1-217ENST00000489072 NEURL4Q96JN8 1562 aa38.3■■■■□ 3.72
HMGN1-217ENST00000489072 ITGAEP38570 1179 aa38.29■■■■□ 3.72
HMGN1-217ENST00000489072 EFCAB6Q5THR3 1501 aa38.27■■■■□ 3.72
HMGN1-217ENST00000489072 UBR1Q8IWV7 1749 aa38.25■■■■□ 3.71
HMGN1-217ENST00000489072 RRBP1Q9P2E9 1410 aaKnown RBP38.25■■■■□ 3.71
HMGN1-217ENST00000489072 UNC13BO14795 1591 aa38.23■■■■□ 3.71
HMGN1-217ENST00000489072 ANKLE2Q86XL3 938 aa38.21■■■■□ 3.71
HMGN1-217ENST00000489072 ZNF335Q9H4Z2 1342 aaPredicted RBP38.2■■■■□ 3.71
HMGN1-217ENST00000489072 SYNMO15061 1565 aa38.17■■■■□ 3.7
HMGN1-217ENST00000489072 PIK3C2BO00750 1634 aa38.16■■■■□ 3.7
HMGN1-217ENST00000489072 TET3O43151 1660 aa38.16■■■■□ 3.7
HMGN1-217ENST00000489072 NOS1P29475 1434 aa38.14■■■■□ 3.7
HMGN1-217ENST00000489072 MED14O60244 1454 aa38.14■■■■□ 3.7
HMGN1-217ENST00000489072 GCC2Q8IWJ2 1684 aa38.11■■■■□ 3.69
HMGN1-217ENST00000489072 NPHP4O75161 1426 aaPredicted RBP38.11■■■■□ 3.69
HMGN1-217ENST00000489072 RPRD2Q5VT52 1461 aaKnown RBP38.09■■■■□ 3.69
HMGN1-217ENST00000489072 IQGAP1P46940 1657 aa38.07■■■■□ 3.69
HMGN1-217ENST00000489072 IQGAP3Q86VI3 1631 aa38.07■■■■□ 3.68
HMGN1-217ENST00000489072 ARHGAP23Q9P227 1491 aa38.07■■■■□ 3.68
HMGN1-217ENST00000489072 SLIT1O75093 1534 aa38.07■■■■□ 3.68
HMGN1-217ENST00000489072 IDI1Q13907 227 aa38.06■■■■□ 3.68
HMGN1-217ENST00000489072 IQSEC2Q5JU85 1478 aa38.05■■■■□ 3.68
HMGN1-217ENST00000489072 KDM5AP29375 1690 aaKnown RBP38.04■■■■□ 3.68
HMGN1-217ENST00000489072 E9PCH4 1651 aa38.02■■■■□ 3.68
HMGN1-217ENST00000489072 SCAF11Q99590 1463 aaKnown RBP38.01■■■■□ 3.67
HMGN1-217ENST00000489072 LTKP29376 864 aa38■■■■□ 3.67
HMGN1-217ENST00000489072 NUP155O75694 1391 aa37.99■■■■□ 3.67
HMGN1-217ENST00000489072 STAG3Q9UJ98 1225 aa37.97■■■■□ 3.67
HMGN1-217ENST00000489072 ADGRB3O60242 1522 aa37.97■■■■□ 3.67
HMGN1-217ENST00000489072 TMEM2Q9UHN6 1383 aa37.96■■■■□ 3.67
HMGN1-217ENST00000489072 TXNDC2Q86VQ3 553 aa37.95■■■■□ 3.67
HMGN1-217ENST00000489072 SLC52A1Q9NWF4 448 aa37.95■■■■□ 3.67
HMGN1-217ENST00000489072 NAIPQ13075 1403 aa37.94■■■■□ 3.66
HMGN1-217ENST00000489072 CPS1P31327 1500 aa37.91■■■■□ 3.66
HMGN1-217ENST00000489072 MYO5BQ9ULV0 1848 aa37.89■■■■□ 3.66
HMGN1-217ENST00000489072 EID1Q9Y6B2 187 aa37.89■■■■□ 3.66
HMGN1-217ENST00000489072 STRCP1A6NGW2 1772 aa37.87■■■■□ 3.65
HMGN1-217ENST00000489072 TMEM131LA2VDJ0 1609 aa37.83■■■■□ 3.65
HMGN1-217ENST00000489072 HFM1A2PYH4 1435 aa37.83■■■■□ 3.65
HMGN1-217ENST00000489072 UBAP1LF5GYI3 381 aa37.75■■■■□ 3.63
HMGN1-217ENST00000489072 ZFYVE9O95405 1425 aa37.75■■■■□ 3.63
HMGN1-217ENST00000489072 SPHKAPQ2M3C7 1700 aa37.74■■■■□ 3.63
HMGN1-217ENST00000489072 RIMS2Q9UQ26 1411 aa37.7■■■■□ 3.63
HMGN1-217ENST00000489072 CHGAP10645 457 aaKnown RBP37.7■■■■□ 3.63
HMGN1-217ENST00000489072 LRRC7Q96NW7 1537 aa37.7■■■■□ 3.63
HMGN1-217ENST00000489072 SLC26A8Q96RN1 970 aa37.64■■■■□ 3.62
HMGN1-217ENST00000489072 TRIM52Q96A61 297 aa37.62■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms