RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 RRP7BPQ9NSQ0 103 aa15.52■□□□□ 0.08
SKA1-204ENST00000488454 KDM5CP41229 1560 aa15.52■□□□□ 0.07
SKA1-204ENST00000488454 FRMPD1Q5SYB0 1578 aa15.52■□□□□ 0.07
SKA1-204ENST00000488454 ANKRD30AQ9BXX3 1397 aa15.51■□□□□ 0.07
SKA1-204ENST00000488454 ZMYM4Q5VZL5 1548 aa15.51■□□□□ 0.07
SKA1-204ENST00000488454 ARID4BQ4LE39 1312 aaPredicted RBP15.5■□□□□ 0.07
SKA1-204ENST00000488454 ZFYVE16Q7Z3T8 1539 aa15.5■□□□□ 0.07
SKA1-204ENST00000488454 DNMT1P26358 1616 aaKnown RBP15.5■□□□□ 0.07
SKA1-204ENST00000488454 ATP10AO60312 1499 aa15.49■□□□□ 0.07
SKA1-204ENST00000488454 SHANK2Q9UPX8 1470 aa15.49■□□□□ 0.07
SKA1-204ENST00000488454 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
SKA1-204ENST00000488454 YEATS2Q9ULM3 1422 aa15.49■□□□□ 0.07
SKA1-204ENST00000488454 HECW2Q9P2P5 1572 aa15.49■□□□□ 0.07
SKA1-204ENST00000488454 ATP7AQ04656 1500 aa15.48■□□□□ 0.07
SKA1-204ENST00000488454 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
SKA1-204ENST00000488454 PTPRKQ15262 1439 aa15.46■□□□□ 0.07
SKA1-204ENST00000488454 MAST1Q9Y2H9 1570 aa15.45■□□□□ 0.06
SKA1-204ENST00000488454 NCOA1Q15788 1441 aa15.45■□□□□ 0.06
SKA1-204ENST00000488454 ROCK1Q13464 1354 aa15.45■□□□□ 0.06
SKA1-204ENST00000488454 DHX29Q7Z478 1369 aaKnown RBP15.45■□□□□ 0.06
SKA1-204ENST00000488454 KIF15Q9NS87 1388 aa15.45■□□□□ 0.06
SKA1-204ENST00000488454 SSUH2Q9Y2M2 353 aa15.44■□□□□ 0.06
SKA1-204ENST00000488454 A2MP01023 1474 aa15.44■□□□□ 0.06
SKA1-204ENST00000488454 INO80Q9ULG1 1556 aaPredicted RBP15.44■□□□□ 0.06
SKA1-204ENST00000488454 KIDINS220Q9ULH0 1771 aa15.44■□□□□ 0.06
SKA1-204ENST00000488454 ARHGEF40Q8TER5 1519 aa15.43■□□□□ 0.06
SKA1-204ENST00000488454 ADGRL2O95490 1459 aa15.42■□□□□ 0.06
SKA1-204ENST00000488454 KIF3BO15066 747 aa15.42■□□□□ 0.06
SKA1-204ENST00000488454 DIP2CQ9Y2E4 1556 aa15.41■□□□□ 0.06
SKA1-204ENST00000488454 MLECQ14165 292 aa15.41■□□□□ 0.06
SKA1-204ENST00000488454 CROCC2H7BZ55 1655 aa15.41■□□□□ 0.06
SKA1-204ENST00000488454 ABCA6Q8N139 1617 aa15.39■□□□□ 0.05
SKA1-204ENST00000488454 DUOX2Q9NRD8 1548 aa15.39■□□□□ 0.05
SKA1-204ENST00000488454 GGT6Q6P531 493 aa15.39■□□□□ 0.05
SKA1-204ENST00000488454 PLXNC1O60486 1568 aa15.38■□□□□ 0.05
SKA1-204ENST00000488454 REM2Q8IYK8 340 aaPredicted RBP15.38■□□□□ 0.05
SKA1-204ENST00000488454 ESF1Q9H501 851 aaKnown RBP15.38■□□□□ 0.05
SKA1-204ENST00000488454 ANKRD50Q9ULJ7 1429 aa15.37■□□□□ 0.05
SKA1-204ENST00000488454 ERBINQ96RT1 1412 aa15.36■□□□□ 0.05
SKA1-204ENST00000488454 ADGBQ8N7X0 1667 aa15.36■□□□□ 0.05
SKA1-204ENST00000488454 REREQ9P2R6 1566 aa15.36■□□□□ 0.05
SKA1-204ENST00000488454 AGLP35573 1532 aa15.35■□□□□ 0.05
SKA1-204ENST00000488454 SPDYE4A6NLX3 237 aa15.35■□□□□ 0.05
SKA1-204ENST00000488454 HFM1A2PYH4 1435 aa15.34■□□□□ 0.05
SKA1-204ENST00000488454 NAIPQ13075 1403 aa15.34■□□□□ 0.05
SKA1-204ENST00000488454 ACIN1Q9UKV3 1341 aaKnown RBP15.32■□□□□ 0.04
SKA1-204ENST00000488454 SETD5Q9C0A6 1442 aa15.32■□□□□ 0.04
SKA1-204ENST00000488454 TRIM52Q96A61 297 aa15.31■□□□□ 0.04
SKA1-204ENST00000488454 PCGF6Q9BYE7 350 aa15.31■□□□□ 0.04
SKA1-204ENST00000488454 WASHC2CQ9Y4E1 1318 aa15.31■□□□□ 0.04
SKA1-204ENST00000488454 KANK1Q14678 1352 aa15.31■□□□□ 0.04
SKA1-204ENST00000488454 HRCP23327 699 aa15.27■□□□□ 0.04
SKA1-204ENST00000488454 EIF2AK4Q9P2K8 1649 aaKnown RBP15.27■□□□□ 0.03
SKA1-204ENST00000488454 NUP155O75694 1391 aa15.26■□□□□ 0.03
SKA1-204ENST00000488454 RAB3GAP2Q9H2M9 1393 aa15.25■□□□□ 0.03
SKA1-204ENST00000488454 KDM4FA0A1W2PPD8 638 aa15.25■□□□□ 0.03
SKA1-204ENST00000488454 SIGLEC1Q9BZZ2 1709 aa15.24■□□□□ 0.03
SKA1-204ENST00000488454 CNTLNQ9NXG0 1405 aa15.24■□□□□ 0.03
SKA1-204ENST00000488454 BCORL1Q5H9F3 1711 aa15.23■□□□□ 0.03
SKA1-204ENST00000488454 PITPNM1O00562 1244 aa15.22■□□□□ 0.03
SKA1-204ENST00000488454 GCC2Q8IWJ2 1684 aa15.22■□□□□ 0.03
SKA1-204ENST00000488454 CHRDL2Q6WN34 429 aa15.21■□□□□ 0.03
SKA1-204ENST00000488454 ZMYM3Q14202 1370 aa15.21■□□□□ 0.02
SKA1-204ENST00000488454 RNF17Q9BXT8 1623 aaKnown RBP15.2■□□□□ 0.02
SKA1-204ENST00000488454 CEBPAP49715 358 aaPredicted RBP15.19■□□□□ 0.02
SKA1-204ENST00000488454 KDM5DQ9BY66 1539 aa15.18■□□□□ 0.02
SKA1-204ENST00000488454 FAM135AQ9P2D6 1515 aa15.18■□□□□ 0.02
SKA1-204ENST00000488454 MPHOSPH9Q99550 1183 aa15.18■□□□□ 0.02
SKA1-204ENST00000488454 ADAMTSL3P82987 1691 aa15.18■□□□□ 0.02
SKA1-204ENST00000488454 PRDM15P57071 1507 aaPredicted RBP15.17■□□□□ 0.02
SKA1-204ENST00000488454 SPDYE1Q8NFV5 336 aaPredicted RBP15.17■□□□□ 0.02
SKA1-204ENST00000488454 DEPDC5O75140 1603 aa15.17■□□□□ 0.02
SKA1-204ENST00000488454 MADDQ8WXG6 1647 aa15.16■□□□□ 0.02
SKA1-204ENST00000488454 ABCC3O15438 1527 aa15.16■□□□□ 0.02
SKA1-204ENST00000488454 UNC13BO14795 1591 aa15.15■□□□□ 0.02
SKA1-204ENST00000488454 MROH1Q8NDA8 1641 aa15.15■□□□□ 0.02
SKA1-204ENST00000488454 PKD2Q13563 968 aa15.15■□□□□ 0.02
SKA1-204ENST00000488454 FKBP8Q14318 412 aa15.15■□□□□ 0.02
SKA1-204ENST00000488454 PTPRMP28827 1452 aa15.14■□□□□ 0.01
SKA1-204ENST00000488454 FER1L4A9Z1Z3 1794 aa15.14■□□□□ 0.01
SKA1-204ENST00000488454 LMTK2Q8IWU2 1503 aa15.13■□□□□ 0.01
SKA1-204ENST00000488454 FBXO31Q5XUX0 539 aaPredicted RBP15.13■□□□□ 0.01
SKA1-204ENST00000488454 VWDEQ8N2E2 1590 aa15.13■□□□□ 0.01
SKA1-204ENST00000488454 CLTCQ00610 1675 aaKnown RBP15.12■□□□□ 0.01
SKA1-204ENST00000488454 ARHGAP31Q2M1Z3 1444 aa15.12■□□□□ 0.01
SKA1-204ENST00000488454 ZC3H13Q5T200 1668 aaKnown RBP15.12■□□□□ 0.01
SKA1-204ENST00000488454 RIMS1Q86UR5 1692 aaKnown RBP15.12■□□□□ 0.01
SKA1-204ENST00000488454 CLEC11AQ9Y240 323 aa15.11■□□□□ 0.01
SKA1-204ENST00000488454 IQGAP3Q86VI3 1631 aa15.1■□□□□ 0.01
SKA1-204ENST00000488454 PZPP20742 1482 aa15.1■□□□□ 0.01
SKA1-204ENST00000488454 NPATQ14207 1427 aa15.09■□□□□ 0.01
SKA1-204ENST00000488454 ILDR1Q86SU0 546 aaPredicted RBP15.09■□□□□ 0.01
SKA1-204ENST00000488454 PROM2Q8N271 834 aa15.09■□□□□ 0.01
SKA1-204ENST00000488454 MROH2AA6NES4 1674 aa15.09■□□□□ 0.01
SKA1-204ENST00000488454 RPRD2Q5VT52 1461 aaKnown RBP15.08■□□□□ 0.01
SKA1-204ENST00000488454 CEP152O94986 1710 aa15.08■□□□□ 0
SKA1-204ENST00000488454 CAMSAP1Q5T5Y3 1602 aa15.07■□□□□ 0
SKA1-204ENST00000488454 TNRQ92752 1358 aa15.07■□□□□ 0
SKA1-204ENST00000488454 EFCAB6Q5THR3 1501 aa15.07■□□□□ 0
SKA1-204ENST00000488454 TET3O43151 1660 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms