RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 MAST1Q9Y2H9 1570 aa35.33■■■■□ 3.25
PTPN4-211ENST00000488279 NCKAP5LQ9HCH0 1330 aa35.32■■■■□ 3.25
PTPN4-211ENST00000488279 KDM5DQ9BY66 1539 aa35.32■■■■□ 3.25
PTPN4-211ENST00000488279 FAM135AQ9P2D6 1515 aa35.32■■■■□ 3.25
PTPN4-211ENST00000488279 MYO3AQ8NEV4 1616 aa35.31■■■■□ 3.24
PTPN4-211ENST00000488279 PKD2Q13563 968 aa35.3■■■■□ 3.24
PTPN4-211ENST00000488279 CEP170BQ9Y4F5 1589 aaPredicted RBP35.29■■■■□ 3.24
PTPN4-211ENST00000488279 TNRQ92752 1358 aa35.27■■■■□ 3.24
PTPN4-211ENST00000488279 PZPP20742 1482 aa35.27■■■■□ 3.24
PTPN4-211ENST00000488279 ZNF142P52746 1687 aaPredicted RBP35.25■■■■□ 3.23
PTPN4-211ENST00000488279 PLA2R1Q13018 1463 aa35.25■■■■□ 3.23
PTPN4-211ENST00000488279 A2ML1A8K2U0 1454 aa35.24■■■■□ 3.23
PTPN4-211ENST00000488279 ABCC5O15440 1437 aa35.21■■■■□ 3.23
PTPN4-211ENST00000488279 FGD6Q6ZV73 1430 aa35.19■■■■□ 3.22
PTPN4-211ENST00000488279 PTPN23Q9H3S7 1636 aa35.19■■■■□ 3.22
PTPN4-211ENST00000488279 RRP7BPQ9NSQ0 103 aa35.19■■■■□ 3.22
PTPN4-211ENST00000488279 DUOX2Q9NRD8 1548 aa35.17■■■■□ 3.22
PTPN4-211ENST00000488279 TCOF1Q13428 1488 aaKnown RBP35.17■■■■□ 3.22
PTPN4-211ENST00000488279 KIF15Q9NS87 1388 aa35.16■■■■□ 3.22
PTPN4-211ENST00000488279 RNF17Q9BXT8 1623 aaKnown RBP35.16■■■■□ 3.22
PTPN4-211ENST00000488279 SHANK2Q9UPX8 1470 aa35.15■■■■□ 3.22
PTPN4-211ENST00000488279 DNMT1P26358 1616 aaKnown RBP35.14■■■■□ 3.22
PTPN4-211ENST00000488279 EIF2AK4Q9P2K8 1649 aaKnown RBP35.14■■■■□ 3.22
PTPN4-211ENST00000488279 DAPK1P53355 1430 aa35.13■■■■□ 3.21
PTPN4-211ENST00000488279 LTBP4Q8N2S1 1624 aa35.13■■■■□ 3.21
PTPN4-211ENST00000488279 THEMISQ8N1K5 641 aaPredicted RBP35.12■■■■□ 3.21
PTPN4-211ENST00000488279 ABCC3O15438 1527 aa35.11■■■■□ 3.21
PTPN4-211ENST00000488279 NLRP1Q9C000 1473 aa35.09■■■■□ 3.21
PTPN4-211ENST00000488279 ZNF335Q9H4Z2 1342 aaPredicted RBP35.08■■■■□ 3.21
PTPN4-211ENST00000488279 CHIC2Q9UKJ5 165 aa35.07■■■■□ 3.2
PTPN4-211ENST00000488279 ERBINQ96RT1 1412 aa35.06■■■■□ 3.2
PTPN4-211ENST00000488279 ANKLE2Q86XL3 938 aa35.06■■■■□ 3.2
PTPN4-211ENST00000488279 ZC3H13Q5T200 1668 aaKnown RBP35.05■■■■□ 3.2
PTPN4-211ENST00000488279 ANKRD30AQ9BXX3 1397 aa35.04■■■■□ 3.2
PTPN4-211ENST00000488279 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.03■■■■□ 3.2
PTPN4-211ENST00000488279 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.03■■■■□ 3.29e-7■□□□□ 10.8
PTPN4-211ENST00000488279 MROH1Q8NDA8 1641 aa35.03■■■■□ 3.2
PTPN4-211ENST00000488279 CROCC2H7BZ55 1655 aa35.02■■■■□ 3.2
PTPN4-211ENST00000488279 FAM50AQ14320 339 aaKnown RBP35.01■■■■□ 3.2
PTPN4-211ENST00000488279 IQSEC2Q5JU85 1478 aa35.01■■■■□ 3.19
PTPN4-211ENST00000488279 UGGT1Q9NYU2 1555 aa35■■■■□ 3.19
PTPN4-211ENST00000488279 SPATA31D1Q6ZQQ2 1576 aa34.98■■■■□ 3.19
PTPN4-211ENST00000488279 ERVK-7P63135 1459 aa34.97■■■■□ 3.19
PTPN4-211ENST00000488279 KANK1Q14678 1352 aa34.96■■■■□ 3.19
PTPN4-211ENST00000488279 PRDM15P57071 1507 aaPredicted RBP34.93■■■■□ 3.18
PTPN4-211ENST00000488279 ARHGAP31Q2M1Z3 1444 aa34.92■■■■□ 3.18
PTPN4-211ENST00000488279 CEP152O94986 1710 aa34.91■■■■□ 3.18
PTPN4-211ENST00000488279 NEURL4Q96JN8 1562 aa34.88■■■■□ 3.17
PTPN4-211ENST00000488279 POLR1AO95602 1720 aaPredicted RBP34.87■■■■□ 3.17
PTPN4-211ENST00000488279 UBAP1LF5GYI3 381 aa34.85■■■■□ 3.17
PTPN4-211ENST00000488279 NPHP4O75161 1426 aaPredicted RBP34.85■■■■□ 3.17
PTPN4-211ENST00000488279 MED14O60244 1454 aa34.84■■■■□ 3.17
PTPN4-211ENST00000488279 ADGRL2O95490 1459 aa34.84■■■■□ 3.17
PTPN4-211ENST00000488279 DEPDC5O75140 1603 aa34.83■■■■□ 3.17
PTPN4-211ENST00000488279 CFAP65Q6ZU64 1925 aaKnown RBP34.82■■■■□ 3.16
PTPN4-211ENST00000488279 LMTK2Q8IWU2 1503 aa34.76■■■■□ 3.16
PTPN4-211ENST00000488279 ANKRD50Q9ULJ7 1429 aa34.76■■■■□ 3.16
PTPN4-211ENST00000488279 CPS1P31327 1500 aa34.76■■■■□ 3.15
PTPN4-211ENST00000488279 STAG3Q9UJ98 1225 aa34.75■■■■□ 3.15
PTPN4-211ENST00000488279 TXNDC2Q86VQ3 553 aa34.74■■■■□ 3.15
PTPN4-211ENST00000488279 VWDEQ8N2E2 1590 aa34.73■■■■□ 3.15
PTPN4-211ENST00000488279 LTKP29376 864 aa34.71■■■■□ 3.15
PTPN4-211ENST00000488279 EID1Q9Y6B2 187 aa34.71■■■■□ 3.15
PTPN4-211ENST00000488279 UBR1Q8IWV7 1749 aa34.71■■■■□ 3.15
PTPN4-211ENST00000488279 IDI1Q13907 227 aa34.7■■■■□ 3.15
PTPN4-211ENST00000488279 PPARGC1BQ86YN6 1023 aaKnown RBP34.69■■■■□ 3.14
PTPN4-211ENST00000488279 IQGAP1P46940 1657 aa34.68■■■■□ 3.14
PTPN4-211ENST00000488279 SCAF11Q99590 1463 aaKnown RBP34.68■■■■□ 3.14
PTPN4-211ENST00000488279 TOM1O60784 492 aa34.66■■■■□ 3.14
PTPN4-211ENST00000488279 SLIT1O75093 1534 aa34.65■■■■□ 3.14
PTPN4-211ENST00000488279 ARHGAP23Q9P227 1491 aa34.65■■■■□ 3.14
PTPN4-211ENST00000488279 TMEM2Q9UHN6 1383 aa34.63■■■■□ 3.13
PTPN4-211ENST00000488279 SLC52A1Q9NWF4 448 aa34.63■■■■□ 3.13
PTPN4-211ENST00000488279 ROCK1Q13464 1354 aa34.62■■■■□ 3.13
PTPN4-211ENST00000488279 EFCAB6Q5THR3 1501 aa34.62■■■■□ 3.13
PTPN4-211ENST00000488279 NOS1P29475 1434 aa34.62■■■■□ 3.13
PTPN4-211ENST00000488279 PIK3C2BO00750 1634 aa34.6■■■■□ 3.13
PTPN4-211ENST00000488279 ITGAEP38570 1179 aa34.6■■■■□ 3.13
PTPN4-211ENST00000488279 SCAF1Q9H7N4 1312 aaKnown RBP34.58■■■■□ 3.13
PTPN4-211ENST00000488279 PIP4K2BP78356 416 aa34.58■■■■□ 3.13
PTPN4-211ENST00000488279 DISP3Q9P2K9 1392 aa34.58■■■■□ 3.13
PTPN4-211ENST00000488279 RPRD2Q5VT52 1461 aaKnown RBP34.56■■■■□ 3.12
PTPN4-211ENST00000488279 SYNMO15061 1565 aa34.54■■■■□ 3.12
PTPN4-211ENST00000488279 KDM5AP29375 1690 aaKnown RBP34.5■■■■□ 3.11
PTPN4-211ENST00000488279 LRRC7Q96NW7 1537 aa34.49■■■■□ 3.11
PTPN4-211ENST00000488279 TET3O43151 1660 aa34.45■■■■□ 3.11
PTPN4-211ENST00000488279 UNC13BO14795 1591 aa34.45■■■■□ 3.1
PTPN4-211ENST00000488279 STRCP1A6NGW2 1772 aa34.44■■■■□ 3.1
PTPN4-211ENST00000488279 HSPA1LP34931 641 aa34.44■■■■□ 3.1
PTPN4-211ENST00000488279 ADGRB3O60242 1522 aa34.44■■■■□ 3.1
PTPN4-211ENST00000488279 NUP155O75694 1391 aa34.43■■■■□ 3.1
PTPN4-211ENST00000488279 HDGFP51858 240 aaKnown RBP34.42■■■■□ 3.1
PTPN4-211ENST00000488279 BCANQ96GW7 911 aa34.41■■■■□ 3.1
PTPN4-211ENST00000488279 SLC26A8Q96RN1 970 aa34.41■■■■□ 3.1
PTPN4-211ENST00000488279 GCC2Q8IWJ2 1684 aa34.36■■■■□ 3.09
PTPN4-211ENST00000488279 CHGAP10645 457 aaKnown RBP34.36■■■■□ 3.09
PTPN4-211ENST00000488279 KCNA6P17658 529 aa34.36■■■■□ 3.09
PTPN4-211ENST00000488279 PPP1R15AO75807 674 aaPredicted RBP34.33■■■■□ 3.09
PTPN4-211ENST00000488279 ILDR2Q71H61 639 aa34.33■■■■□ 3.09
PTPN4-211ENST00000488279 IQGAP3Q86VI3 1631 aa34.33■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms