RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 PTPN23Q9H3S7 1636 aa16.42■□□□□ 0.22
TOP3B-216ENST00000487485 FGD6Q6ZV73 1430 aa16.42■□□□□ 0.22
TOP3B-216ENST00000487485 CEP170BQ9Y4F5 1589 aaPredicted RBP16.42■□□□□ 0.22
TOP3B-216ENST00000487485 HSPA1LP34931 641 aa16.41■□□□□ 0.22
TOP3B-216ENST00000487485 PLXNC1O60486 1568 aa16.41■□□□□ 0.22
TOP3B-216ENST00000487485 ZNF142P52746 1687 aaPredicted RBP16.4■□□□□ 0.22
TOP3B-216ENST00000487485 PIP4K2BP78356 416 aa16.4■□□□□ 0.22
TOP3B-216ENST00000487485 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
TOP3B-216ENST00000487485 INO80Q9ULG1 1556 aaPredicted RBP16.38■□□□□ 0.21
TOP3B-216ENST00000487485 MBD5Q9P267 1494 aa16.38■□□□□ 0.21
TOP3B-216ENST00000487485 FBXO31Q5XUX0 539 aaPredicted RBP16.38■□□□□ 0.21
TOP3B-216ENST00000487485 A2ML1A8K2U0 1454 aa16.36■□□□□ 0.21
TOP3B-216ENST00000487485 TOM1O60784 492 aa16.36■□□□□ 0.21
TOP3B-216ENST00000487485 RSPH4AQ5TD94 716 aa16.36■□□□□ 0.21
TOP3B-216ENST00000487485 ARHGEF5Q12774 1597 aa16.35■□□□□ 0.21
TOP3B-216ENST00000487485 DNMT1P26358 1616 aaKnown RBP16.35■□□□□ 0.21
TOP3B-216ENST00000487485 FAM50AQ14320 339 aaKnown RBP16.35■□□□□ 0.21
TOP3B-216ENST00000487485 CCDC141Q6ZP82 1450 aa16.33■□□□□ 0.2
TOP3B-216ENST00000487485 KIF3BO15066 747 aa16.32■□□□□ 0.2
TOP3B-216ENST00000487485 DHX29Q7Z478 1369 aaKnown RBP16.32■□□□□ 0.2
TOP3B-216ENST00000487485 TNRQ92752 1358 aa16.32■□□□□ 0.2
TOP3B-216ENST00000487485 ADGBQ8N7X0 1667 aa16.31■□□□□ 0.2
TOP3B-216ENST00000487485 SHANK2Q9UPX8 1470 aa16.31■□□□□ 0.2
TOP3B-216ENST00000487485 TSPY4P0CV99 314 aa16.31■□□□□ 0.2
TOP3B-216ENST00000487485 TSPY10P0CW01 314 aa16.31■□□□□ 0.2
TOP3B-216ENST00000487485 MED1Q15648 1581 aaPredicted RBP16.3■□□□□ 0.2
TOP3B-216ENST00000487485 RRBP1Q9P2E9 1410 aaKnown RBP16.3■□□□□ 0.2
TOP3B-216ENST00000487485 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
TOP3B-216ENST00000487485 NEURL4Q96JN8 1562 aa16.3■□□□□ 0.2
TOP3B-216ENST00000487485 RTEL1-TNFRSF6BF6WH68 1400 aa16.29■□□□□ 0.2
TOP3B-216ENST00000487485 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.29■□□□□ 0.2
TOP3B-216ENST00000487485 CROCC2H7BZ55 1655 aa16.29■□□□□ 0.2
TOP3B-216ENST00000487485 CPS1P31327 1500 aa16.29■□□□□ 0.2
TOP3B-216ENST00000487485 ABCC5O15440 1437 aa16.28■□□□□ 0.2
TOP3B-216ENST00000487485 DAPK1P53355 1430 aa16.28■□□□□ 0.2
TOP3B-216ENST00000487485 WASHC2CQ9Y4E1 1318 aa16.27■□□□□ 0.2
TOP3B-216ENST00000487485 THEMISQ8N1K5 641 aaPredicted RBP16.27■□□□□ 0.2
TOP3B-216ENST00000487485 MAST1Q9Y2H9 1570 aa16.26■□□□□ 0.19
TOP3B-216ENST00000487485 POLR1AO95602 1720 aaPredicted RBP16.26■□□□□ 0.19
TOP3B-216ENST00000487485 PZPP20742 1482 aa16.25■□□□□ 0.19
TOP3B-216ENST00000487485 SENP3Q9H4L4 574 aaPredicted RBP16.25■□□□□ 0.19
TOP3B-216ENST00000487485 VWDEQ8N2E2 1590 aa16.25■□□□□ 0.19
TOP3B-216ENST00000487485 ITGAEP38570 1179 aa16.24■□□□□ 0.19
TOP3B-216ENST00000487485 PHF23Q9BUL5 403 aaPredicted RBP16.24■□□□□ 0.19
TOP3B-216ENST00000487485 NPHP4O75161 1426 aaPredicted RBP16.23■□□□□ 0.19
TOP3B-216ENST00000487485 CHIC2Q9UKJ5 165 aa16.23■□□□□ 0.19
TOP3B-216ENST00000487485 ALKQ9UM73 1620 aa16.23■□□□□ 0.19
TOP3B-216ENST00000487485 KDM5DQ9BY66 1539 aa16.21■□□□□ 0.19
TOP3B-216ENST00000487485 MED14O60244 1454 aa16.21■□□□□ 0.19
TOP3B-216ENST00000487485 UGGT1Q9NYU2 1555 aa16.19■□□□□ 0.18
TOP3B-216ENST00000487485 NLRP1Q9C000 1473 aa16.19■□□□□ 0.18
TOP3B-216ENST00000487485 FAM135AQ9P2D6 1515 aa16.19■□□□□ 0.18
TOP3B-216ENST00000487485 RRP7BPQ9NSQ0 103 aa16.18■□□□□ 0.18
TOP3B-216ENST00000487485 ANKRD30AQ9BXX3 1397 aa16.17■□□□□ 0.18
TOP3B-216ENST00000487485 ADGRL2O95490 1459 aa16.16■□□□□ 0.18
TOP3B-216ENST00000487485 DEPDC5O75140 1603 aa16.16■□□□□ 0.18
TOP3B-216ENST00000487485 STRCP1A6NGW2 1772 aa16.16■□□□□ 0.18
TOP3B-216ENST00000487485 LRRC7Q96NW7 1537 aa16.16■□□□□ 0.18
TOP3B-216ENST00000487485 CFAP65Q6ZU64 1925 aaKnown RBP16.15■□□□□ 0.18
TOP3B-216ENST00000487485 KIF15Q9NS87 1388 aa16.14■□□□□ 0.17
TOP3B-216ENST00000487485 RGS17Q9UGC6 210 aaPredicted RBP16.14■□□□□ 0.17
TOP3B-216ENST00000487485 IQGAP1P46940 1657 aa16.14■□□□□ 0.17
TOP3B-216ENST00000487485 DUOX2Q9NRD8 1548 aa16.14■□□□□ 0.17
TOP3B-216ENST00000487485 ROCK1Q13464 1354 aa16.13■□□□□ 0.17
TOP3B-216ENST00000487485 LTKP29376 864 aa16.1■□□□□ 0.17
TOP3B-216ENST00000487485 ABCC3O15438 1527 aa16.09■□□□□ 0.17
TOP3B-216ENST00000487485 EIF2AK4Q9P2K8 1649 aaKnown RBP16.09■□□□□ 0.17
TOP3B-216ENST00000487485 ERVK-7P63135 1459 aa16.09■□□□□ 0.17
TOP3B-216ENST00000487485 TXNDC2Q86VQ3 553 aa16.08■□□□□ 0.16
TOP3B-216ENST00000487485 ERBINQ96RT1 1412 aa16.08■□□□□ 0.16
TOP3B-216ENST00000487485 RNF17Q9BXT8 1623 aaKnown RBP16.06■□□□□ 0.16
TOP3B-216ENST00000487485 ANKRD50Q9ULJ7 1429 aa16.06■□□□□ 0.16
TOP3B-216ENST00000487485 ZC3H13Q5T200 1668 aaKnown RBP16.05■□□□□ 0.16
TOP3B-216ENST00000487485 GCC2Q8IWJ2 1684 aa16.05■□□□□ 0.16
TOP3B-216ENST00000487485 SYNMO15061 1565 aa16.04■□□□□ 0.16
TOP3B-216ENST00000487485 SCAF11Q99590 1463 aaKnown RBP16.04■□□□□ 0.16
TOP3B-216ENST00000487485 NAIPQ13075 1403 aa16.03■□□□□ 0.16
TOP3B-216ENST00000487485 TRIM26Q12899 539 aaPredicted RBP16.03■□□□□ 0.16
TOP3B-216ENST00000487485 HFM1A2PYH4 1435 aa16.02■□□□□ 0.16
TOP3B-216ENST00000487485 UBR1Q8IWV7 1749 aa16.02■□□□□ 0.16
TOP3B-216ENST00000487485 MROH1Q8NDA8 1641 aa16.02■□□□□ 0.16
TOP3B-216ENST00000487485 POTEAQ6S8J7 498 aa16.02■□□□□ 0.16
TOP3B-216ENST00000487485 XIRP1Q702N8 1843 aaKnown RBP16.01■□□□□ 0.15
TOP3B-216ENST00000487485 EID1Q9Y6B2 187 aa16.01■□□□□ 0.15
TOP3B-216ENST00000487485 ARHGAP23Q9P227 1491 aa16.01■□□□□ 0.15
TOP3B-216ENST00000487485 CEP152O94986 1710 aa16■□□□□ 0.15
TOP3B-216ENST00000487485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.15
TOP3B-216ENST00000487485 SLIT1O75093 1534 aa15.99■□□□□ 0.15
TOP3B-216ENST00000487485 RBM33Q96EV2 1170 aaKnown RBP15.99■□□□□ 0.15
TOP3B-216ENST00000487485 FAM135BQ49AJ0 1406 aa15.99■□□□□ 0.15
TOP3B-216ENST00000487485 PRDM15P57071 1507 aaPredicted RBP15.97■□□□□ 0.15
TOP3B-216ENST00000487485 TMEM94Q12767 1356 aa15.97■□□□□ 0.15
TOP3B-216ENST00000487485 ARHGAP31Q2M1Z3 1444 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 SETD5Q9C0A6 1442 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 KCNA6P17658 529 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 STAG3Q9UJ98 1225 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 KANK1Q14678 1352 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 TMEM2Q9UHN6 1383 aa15.96■□□□□ 0.15
TOP3B-216ENST00000487485 UNC13BO14795 1591 aa15.96■□□□□ 0.14
TOP3B-216ENST00000487485 IDI1Q13907 227 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms