RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 DHX29Q7Z478 1369 aaKnown RBP25.01■■□□□ 1.59
MCF2L-228ENST00000487354 KDM5DQ9BY66 1539 aa25.01■■□□□ 1.59
MCF2L-228ENST00000487354 FAM135AQ9P2D6 1515 aa25.01■■□□□ 1.59
MCF2L-228ENST00000487354 PZPP20742 1482 aa25■■□□□ 1.59
MCF2L-228ENST00000487354 CCDC141Q6ZP82 1450 aa24.97■■□□□ 1.59
MCF2L-228ENST00000487354 VWDEQ8N2E2 1590 aa24.97■■□□□ 1.59
MCF2L-228ENST00000487354 CAMSAP2Q08AD1 1489 aa24.96■■□□□ 1.59
MCF2L-228ENST00000487354 ALKQ9UM73 1620 aa24.96■■□□□ 1.59
MCF2L-228ENST00000487354 TNRQ92752 1358 aa24.95■■□□□ 1.59
MCF2L-228ENST00000487354 CPS1P31327 1500 aa24.95■■□□□ 1.58
MCF2L-228ENST00000487354 FBXO31Q5XUX0 539 aaPredicted RBP24.94■■□□□ 1.58
MCF2L-228ENST00000487354 MED1Q15648 1581 aaPredicted RBP24.93■■□□□ 1.58
MCF2L-228ENST00000487354 NCOA2Q15596 1464 aa24.92■■□□□ 1.58
MCF2L-228ENST00000487354 SHANK2Q9UPX8 1470 aa24.92■■□□□ 1.58
MCF2L-228ENST00000487354 DEPDC5O75140 1603 aa24.91■■□□□ 1.58
MCF2L-228ENST00000487354 ARHGEF5Q12774 1597 aa24.91■■□□□ 1.58
MCF2L-228ENST00000487354 STRCP1A6NGW2 1772 aa24.9■■□□□ 1.58
MCF2L-228ENST00000487354 RNF17Q9BXT8 1623 aaKnown RBP24.9■■□□□ 1.58
MCF2L-228ENST00000487354 KIF3BO15066 747 aa24.88■■□□□ 1.57
MCF2L-228ENST00000487354 MED14O60244 1454 aa24.88■■□□□ 1.57
MCF2L-228ENST00000487354 NLRP1Q9C000 1473 aa24.86■■□□□ 1.57
MCF2L-228ENST00000487354 IQGAP1P46940 1657 aa24.85■■□□□ 1.57
MCF2L-228ENST00000487354 UGGT1Q9NYU2 1555 aa24.85■■□□□ 1.57
MCF2L-228ENST00000487354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.85■■□□□ 1.57
MCF2L-228ENST00000487354 HSPA1LP34931 641 aa24.85■■□□□ 1.57
MCF2L-228ENST00000487354 MIA2Q96PC5 1412 aa24.85■■□□□ 1.57
MCF2L-228ENST00000487354 MROH1Q8NDA8 1641 aa24.84■■□□□ 1.57
MCF2L-228ENST00000487354 ZC3H13Q5T200 1668 aaKnown RBP24.84■■□□□ 1.57
MCF2L-228ENST00000487354 ABCC3O15438 1527 aa24.82■■□□□ 1.56
MCF2L-228ENST00000487354 MAST1Q9Y2H9 1570 aa24.82■■□□□ 1.56
MCF2L-228ENST00000487354 NPHP4O75161 1426 aaPredicted RBP24.81■■□□□ 1.56
MCF2L-228ENST00000487354 WASHC2CQ9Y4E1 1318 aa24.8■■□□□ 1.56
MCF2L-228ENST00000487354 EIF2AK4Q9P2K8 1649 aaKnown RBP24.79■■□□□ 1.56
MCF2L-228ENST00000487354 CEP152O94986 1710 aa24.78■■□□□ 1.56
MCF2L-228ENST00000487354 PIP4K2BP78356 416 aa24.77■■□□□ 1.56
MCF2L-228ENST00000487354 SYNMO15061 1565 aa24.76■■□□□ 1.55
MCF2L-228ENST00000487354 UBR1Q8IWV7 1749 aa24.76■■□□□ 1.55
MCF2L-228ENST00000487354 ANKLE2Q86XL3 938 aa24.76■■□□□ 1.55
MCF2L-228ENST00000487354 RSPH4AQ5TD94 716 aa24.75■■□□□ 1.55
MCF2L-228ENST00000487354 ERVK-7P63135 1459 aa24.75■■□□□ 1.55
MCF2L-228ENST00000487354 TOM1O60784 492 aa24.74■■□□□ 1.55
MCF2L-228ENST00000487354 SCAF1Q9H7N4 1312 aaKnown RBP24.74■■□□□ 1.55
MCF2L-228ENST00000487354 LRRC7Q96NW7 1537 aa24.73■■□□□ 1.55
MCF2L-228ENST00000487354 THEMISQ8N1K5 641 aaPredicted RBP24.73■■□□□ 1.55
MCF2L-228ENST00000487354 CFAP65Q6ZU64 1925 aaKnown RBP24.72■■□□□ 1.55
MCF2L-228ENST00000487354 LRRC9Q6ZRR7 1453 aa24.71■■□□□ 1.55
MCF2L-228ENST00000487354 XIRP1Q702N8 1843 aaKnown RBP24.71■■□□□ 1.55
MCF2L-228ENST00000487354 CROCC2H7BZ55 1655 aa24.64■■□□□ 1.53
MCF2L-228ENST00000487354 PRDM15P57071 1507 aaPredicted RBP24.64■■□□□ 1.53
MCF2L-228ENST00000487354 ARHGAP23Q9P227 1491 aa24.64■■□□□ 1.53
MCF2L-228ENST00000487354 TSPY4P0CV99 314 aa24.63■■□□□ 1.53
MCF2L-228ENST00000487354 TSPY10P0CW01 314 aa24.63■■□□□ 1.53
MCF2L-228ENST00000487354 VPS8Q8N3P4 1428 aa24.62■■□□□ 1.53
MCF2L-228ENST00000487354 SLIT1O75093 1534 aa24.62■■□□□ 1.53
MCF2L-228ENST00000487354 SCAF11Q99590 1463 aaKnown RBP24.61■■□□□ 1.53
MCF2L-228ENST00000487354 DUOX2Q9NRD8 1548 aa24.61■■□□□ 1.53
MCF2L-228ENST00000487354 MYOM3Q5VTT5 1437 aa24.59■■□□□ 1.53
MCF2L-228ENST00000487354 MAP3K1Q13233 1512 aa24.58■■□□□ 1.53
MCF2L-228ENST00000487354 PIK3C2BO00750 1634 aa24.57■■□□□ 1.52
MCF2L-228ENST00000487354 ARHGAP31Q2M1Z3 1444 aa24.56■■□□□ 1.52
MCF2L-228ENST00000487354 KANK4Q5T7N3 995 aaPredicted RBP24.55■■□□□ 1.52
MCF2L-228ENST00000487354 LTKP29376 864 aa24.54■■□□□ 1.52
MCF2L-228ENST00000487354 KDM5AP29375 1690 aaKnown RBP24.52■■□□□ 1.52
MCF2L-228ENST00000487354 ERBINQ96RT1 1412 aa24.5■■□□□ 1.51
MCF2L-228ENST00000487354 PHF23Q9BUL5 403 aaPredicted RBP24.49■■□□□ 1.51
MCF2L-228ENST00000487354 SENP3Q9H4L4 574 aaPredicted RBP24.49■■□□□ 1.51
MCF2L-228ENST00000487354 ABCC5O15440 1437 aa24.49■■□□□ 1.51
MCF2L-228ENST00000487354 PTPN23Q9H3S7 1636 aa24.48■■□□□ 1.51
MCF2L-228ENST00000487354 KIF15Q9NS87 1388 aa24.48■■□□□ 1.51
MCF2L-228ENST00000487354 RGS17Q9UGC6 210 aaPredicted RBP24.46■■□□□ 1.51
MCF2L-228ENST00000487354 TXNDC2Q86VQ3 553 aa24.44■■□□□ 1.5
MCF2L-228ENST00000487354 LMTK2Q8IWU2 1503 aa24.44■■□□□ 1.5
MCF2L-228ENST00000487354 TET3O43151 1660 aa24.43■■□□□ 1.5
MCF2L-228ENST00000487354 TMEM2Q9UHN6 1383 aa24.43■■□□□ 1.5
MCF2L-228ENST00000487354 EFCAB6Q5THR3 1501 aa24.42■■□□□ 1.5
MCF2L-228ENST00000487354 DAPK1P53355 1430 aa24.41■■□□□ 1.5
MCF2L-228ENST00000487354 ROBO1Q9Y6N7 1651 aa24.4■■□□□ 1.5
MCF2L-228ENST00000487354 NWD1Q149M9 1564 aa24.4■■□□□ 1.5
MCF2L-228ENST00000487354 FAM135BQ49AJ0 1406 aa24.39■■□□□ 1.5
MCF2L-228ENST00000487354 ADGRB3O60242 1522 aa24.37■■□□□ 1.49
MCF2L-228ENST00000487354 LOC105371045A0A1W2PR82 267 aa24.37■■□□□ 1.49
MCF2L-228ENST00000487354 RRP7BPQ9NSQ0 103 aa24.36■■□□□ 1.49
MCF2L-228ENST00000487354 TMEM94Q12767 1356 aa24.35■■□□□ 1.49
MCF2L-228ENST00000487354 MYO5BQ9ULV0 1848 aa24.35■■□□□ 1.49
MCF2L-228ENST00000487354 NOS1P29475 1434 aa24.35■■□□□ 1.49
MCF2L-228ENST00000487354 EID1Q9Y6B2 187 aa24.33■■□□□ 1.49
MCF2L-228ENST00000487354 FGD6Q6ZV73 1430 aa24.33■■□□□ 1.49
MCF2L-228ENST00000487354 IDI1Q13907 227 aa24.31■■□□□ 1.48
MCF2L-228ENST00000487354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.31■■□□□ 1.489e-7■■□□□ 14.2
MCF2L-228ENST00000487354 NKTRP30414 1462 aaKnown RBP24.31■■□□□ 1.48
MCF2L-228ENST00000487354 KANK1Q14678 1352 aa24.29■■□□□ 1.48
MCF2L-228ENST00000487354 KCNA6P17658 529 aa24.28■■□□□ 1.48
MCF2L-228ENST00000487354 CHD2O14647 1828 aaKnown RBP24.28■■□□□ 1.48
MCF2L-228ENST00000487354 GCC2Q8IWJ2 1684 aa24.27■■□□□ 1.48
MCF2L-228ENST00000487354 SETD1AO15047 1707 aaKnown RBP24.26■■□□□ 1.47
MCF2L-228ENST00000487354 ADGRL2O95490 1459 aa24.26■■□□□ 1.47
MCF2L-228ENST00000487354 POTEAQ6S8J7 498 aa24.25■■□□□ 1.47
MCF2L-228ENST00000487354 RBM33Q96EV2 1170 aaKnown RBP24.25■■□□□ 1.47
MCF2L-228ENST00000487354 SLC26A8Q96RN1 970 aa24.25■■□□□ 1.47
MCF2L-228ENST00000487354 ZFYVE9O95405 1425 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms