RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 SCUBE2Q9NQ36 999 aa11.47□□□□□ -0.57
HDAC3-209ENST00000486618 VGFO15240 615 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-209ENST00000486618 PDCD7Q8N8D1 485 aaKnown RBP11.45□□□□□ -0.58
HDAC3-209ENST00000486618 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-209ENST00000486618 ZFP91Q96JP5 570 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-209ENST00000486618 ABCA8O94911 1581 aa11.42□□□□□ -0.58
HDAC3-209ENST00000486618 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.42□□□□□ -0.58
HDAC3-209ENST00000486618 CTTNBP2Q8WZ74 1663 aa11.42□□□□□ -0.58
HDAC3-209ENST00000486618 KIF21BO75037 1637 aa11.42□□□□□ -0.58
HDAC3-209ENST00000486618 PHLDB1Q86UU1 1377 aa11.41□□□□□ -0.58
HDAC3-209ENST00000486618 ARAP3Q8WWN8 1544 aa11.41□□□□□ -0.58
HDAC3-209ENST00000486618 RGL2O15211 777 aa11.39□□□□□ -0.59
HDAC3-209ENST00000486618 EFCAB3Q8N7B9 438 aa11.38□□□□□ -0.59
HDAC3-209ENST00000486618 PTPRMP28827 1452 aa11.38□□□□□ -0.59
HDAC3-209ENST00000486618 TAOK2Q9UL54 1235 aa11.36□□□□□ -0.59
HDAC3-209ENST00000486618 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
HDAC3-209ENST00000486618 ARID4BQ4LE39 1312 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-209ENST00000486618 ATP10BO94823 1461 aa11.34□□□□□ -0.59
HDAC3-209ENST00000486618 ARID3CA6NKF2 412 aa11.34□□□□□ -0.59
HDAC3-209ENST00000486618 NEO1Q92859 1461 aa11.33□□□□□ -0.6
HDAC3-209ENST00000486618 RAPGEF3O95398 923 aa11.33□□□□□ -0.6
HDAC3-209ENST00000486618 DPY19L2Q6NUT2 758 aa11.33□□□□□ -0.6
HDAC3-209ENST00000486618 BCL11BQ9C0K0 894 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-209ENST00000486618 ABCA9Q8IUA7 1624 aa11.33□□□□□ -0.6
HDAC3-209ENST00000486618 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
HDAC3-209ENST00000486618 L3MBTL3Q96JM7 780 aaPredicted RBP11.31□□□□□ -0.6
HDAC3-209ENST00000486618 BCORL1Q5H9F3 1711 aa11.31□□□□□ -0.6
HDAC3-209ENST00000486618 PRXQ9BXM0 1461 aa11.31□□□□□ -0.6
HDAC3-209ENST00000486618 PCF11O94913 1555 aaKnown RBP11.3□□□□□ -0.6
HDAC3-209ENST00000486618 SLAIN1Q8ND83 568 aa11.3□□□□□ -0.6
HDAC3-209ENST00000486618 STK24Q9Y6E0 443 aa11.3□□□□□ -0.6
HDAC3-209ENST00000486618 STK25O00506 426 aa11.29□□□□□ -0.6
HDAC3-209ENST00000486618 MADDQ8WXG6 1647 aa11.28□□□□□ -0.6
HDAC3-209ENST00000486618 SOX12O15370 315 aa11.28□□□□□ -0.6
HDAC3-209ENST00000486618 LMTK3Q96Q04 1460 aa11.27□□□□□ -0.6
HDAC3-209ENST00000486618 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.27□□□□□ -0.61
HDAC3-209ENST00000486618 PLEKHD1A6NEE1 506 aa11.26□□□□□ -0.61
HDAC3-209ENST00000486618 C3orf67Q6ZVT6 689 aa11.26□□□□□ -0.61
HDAC3-209ENST00000486618 RAPGEF6Q8TEU7 1601 aa11.26□□□□□ -0.61
HDAC3-209ENST00000486618 POGZQ7Z3K3 1410 aa11.26□□□□□ -0.61
HDAC3-209ENST00000486618 DENND4BO75064 1496 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-209ENST00000486618 RIMS1Q86UR5 1692 aaKnown RBP11.25□□□□□ -0.61
HDAC3-209ENST00000486618 ERICH6Q7L0X2 663 aa11.25□□□□□ -0.61
HDAC3-209ENST00000486618 ARXQ96QS3 562 aa11.25□□□□□ -0.61
HDAC3-209ENST00000486618 PHF8Q9UPP1 1060 aa11.25□□□□□ -0.61
HDAC3-209ENST00000486618 BOLA1Q9Y3E2 137 aa11.25□□□□□ -0.61
HDAC3-209ENST00000486618 FRMPD1Q5SYB0 1578 aa11.24□□□□□ -0.61
HDAC3-209ENST00000486618 HSPA2P54652 639 aa11.24□□□□□ -0.61
HDAC3-209ENST00000486618 MS4A4AQ96JQ5 239 aa11.24□□□□□ -0.61
HDAC3-209ENST00000486618 CERKQ8TCT0 537 aa11.23□□□□□ -0.61
HDAC3-209ENST00000486618 AKNAQ7Z591 1439 aa11.23□□□□□ -0.61
HDAC3-209ENST00000486618 FANCAO15360 1455 aa11.23□□□□□ -0.61
HDAC3-209ENST00000486618 ARHGEF40Q8TER5 1519 aa11.23□□□□□ -0.61
HDAC3-209ENST00000486618 SAMD9Q5K651 1589 aa11.23□□□□□ -0.61
HDAC3-209ENST00000486618 FHOD3Q2V2M9 1422 aa11.22□□□□□ -0.61
HDAC3-209ENST00000486618 CFAP74Q9C0B2 1584 aa11.21□□□□□ -0.61
HDAC3-209ENST00000486618 G3V3G9 751 aa11.21□□□□□ -0.61
HDAC3-209ENST00000486618 LCE2DQ5TA82 110 aaPredicted RBP11.21□□□□□ -0.61
HDAC3-209ENST00000486618 RICTORQ6R327 1708 aa11.21□□□□□ -0.62
HDAC3-209ENST00000486618 NUP153P49790 1475 aaKnown RBP11.2□□□□□ -0.62
HDAC3-209ENST00000486618 FBXO22Q8NEZ5 403 aa11.19□□□□□ -0.62
HDAC3-209ENST00000486618 FAM163AQ96GL9 167 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-209ENST00000486618 TMEM121BQ9BXQ6 578 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-209ENST00000486618 MFRPQ9BY79 579 aa11.19□□□□□ -0.62
HDAC3-209ENST00000486618 EFCAB5A4FU69 1503 aa11.19□□□□□ -0.62
HDAC3-209ENST00000486618 MAGI2Q86UL8 1455 aa11.19□□□□□ -0.62
HDAC3-209ENST00000486618 NLRP6P59044 892 aa11.18□□□□□ -0.62
HDAC3-209ENST00000486618 ZMYM4Q5VZL5 1548 aa11.18□□□□□ -0.62
HDAC3-209ENST00000486618 ZFYVE16Q7Z3T8 1539 aa11.18□□□□□ -0.62
HDAC3-209ENST00000486618 RANGAP1P46060 587 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-209ENST00000486618 MLECQ14165 292 aa11.17□□□□□ -0.62
HDAC3-209ENST00000486618 MICALL2Q8IY33 904 aa11.16□□□□□ -0.62
HDAC3-209ENST00000486618 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.15□□□□□ -0.62
HDAC3-209ENST00000486618 YEATS2Q9ULM3 1422 aa11.15□□□□□ -0.62
HDAC3-209ENST00000486618 FER1L4A9Z1Z3 1794 aa11.15□□□□□ -0.62
HDAC3-209ENST00000486618 SETD1BQ9UPS6 1966 aaKnown RBP11.14□□□□□ -0.63
HDAC3-209ENST00000486618 POTEMA6NI47 508 aa11.14□□□□□ -0.63
HDAC3-209ENST00000486618 HS6ST3Q8IZP7 471 aa11.14□□□□□ -0.63
HDAC3-209ENST00000486618 TTC37Q6PGP7 1564 aa11.13□□□□□ -0.63
HDAC3-209ENST00000486618 SCAPERQ9BY12 1400 aa11.13□□□□□ -0.63
HDAC3-209ENST00000486618 DISP3Q9P2K9 1392 aa11.13□□□□□ -0.63
HDAC3-209ENST00000486618 HECW1Q76N89 1606 aa11.13□□□□□ -0.63
HDAC3-209ENST00000486618 POTEGQ6S5H5 508 aa11.12□□□□□ -0.63
HDAC3-209ENST00000486618 ATP10AO60312 1499 aa11.12□□□□□ -0.63
HDAC3-209ENST00000486618 PREX1Q8TCU6 1659 aa11.11□□□□□ -0.63
HDAC3-209ENST00000486618 PLCH2O75038 1416 aa11.11□□□□□ -0.63
HDAC3-209ENST00000486618 EEA1Q15075 1411 aa11.11□□□□□ -0.63
HDAC3-209ENST00000486618 EFCAB2Q5VUJ9 269 aa11.11□□□□□ -0.63
HDAC3-209ENST00000486618 C9orf84Q5VXU9 1444 aa11.1□□□□□ -0.63
HDAC3-209ENST00000486618 SIGLEC1Q9BZZ2 1709 aa11.1□□□□□ -0.63
HDAC3-209ENST00000486618 SOCS7O14512 581 aa11.1□□□□□ -0.63
HDAC3-209ENST00000486618 CHGAP10645 457 aaKnown RBP11.1□□□□□ -0.63
HDAC3-209ENST00000486618 ARHGEF12Q9NZN5 1544 aa11.09□□□□□ -0.63
HDAC3-209ENST00000486618 SNPHO15079 494 aa11.09□□□□□ -0.63
HDAC3-209ENST00000486618 CEBPAP49715 358 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-209ENST00000486618 CDK11AQ9UQ88 783 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-209ENST00000486618 ST18O60284 1047 aa11.08□□□□□ -0.64
HDAC3-209ENST00000486618 UHRF1BP1Q6BDS2 1440 aa11.08□□□□□ -0.64
HDAC3-209ENST00000486618 TMEM92Q6UXU6 159 aa11.07□□□□□ -0.64
HDAC3-209ENST00000486618 ILDR2Q71H61 639 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms