RNA–Protein interactions for RNA: ENST00000486211.1

XRN1-212, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 1,180 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-212ENST00000486211 RGS17Q9UGC6 210 aaPredicted RBP14.15□□□□□ -0.14
XRN1-212ENST00000486211 SUPT6HQ7KZ85 1726 aaKnown RBP14.15□□□□□ -0.14
XRN1-212ENST00000486211 ABCC1P33527 1531 aa14.14□□□□□ -0.15
XRN1-212ENST00000486211 PTPRKQ15262 1439 aa14.14□□□□□ -0.15
XRN1-212ENST00000486211 CDC42BPBQ9Y5S2 1711 aa14.12□□□□□ -0.15
XRN1-212ENST00000486211 SHANK2Q9UPX8 1470 aa14.12□□□□□ -0.15
XRN1-212ENST00000486211 NEURL4Q96JN8 1562 aa14.12□□□□□ -0.15
XRN1-212ENST00000486211 ITSN2Q9NZM3 1697 aa14.11□□□□□ -0.15
XRN1-212ENST00000486211 CSRNP3Q8WYN3 585 aa14.11□□□□□ -0.15
XRN1-212ENST00000486211 TROQ12816 1431 aaPredicted RBP14.1□□□□□ -0.15
XRN1-212ENST00000486211 CLTCQ00610 1675 aaKnown RBP14.1□□□□□ -0.15
XRN1-212ENST00000486211 VWDEQ8N2E2 1590 aa14.09□□□□□ -0.15
XRN1-212ENST00000486211 DNMT1P26358 1616 aaKnown RBP14.08□□□□□ -0.15
XRN1-212ENST00000486211 POLR1AO95602 1720 aaPredicted RBP14.07□□□□□ -0.16
XRN1-212ENST00000486211 A2ML1A8K2U0 1454 aa14.07□□□□□ -0.16
XRN1-212ENST00000486211 PREX2Q70Z35 1606 aa14.07□□□□□ -0.16
XRN1-212ENST00000486211 PLXNC1O60486 1568 aa14.05□□□□□ -0.16
XRN1-212ENST00000486211 SAMD9LQ8IVG5 1584 aa14.05□□□□□ -0.16
XRN1-212ENST00000486211 CDK11AQ9UQ88 783 aaPredicted RBP14.05□□□□□ -0.16
XRN1-212ENST00000486211 SPDYE2BA6NHP3 402 aa14.03□□□□□ -0.16
XRN1-212ENST00000486211 PITPNM1O00562 1244 aa14.03□□□□□ -0.16
XRN1-212ENST00000486211 SPDYE6P0CI01 402 aa14.03□□□□□ -0.16
XRN1-212ENST00000486211 SPDYE2Q495Y8 402 aa14.03□□□□□ -0.16
XRN1-212ENST00000486211 CLIP1P30622 1438 aa14.03□□□□□ -0.16
XRN1-212ENST00000486211 PIP4P2Q8N4L2 257 aa14.02□□□□□ -0.17
XRN1-212ENST00000486211 POTEAQ6S8J7 498 aa14.01□□□□□ -0.17
XRN1-212ENST00000486211 LRRIQ1Q96JM4 1722 aa14.01□□□□□ -0.17
XRN1-212ENST00000486211 FMN1Q68DA7 1419 aa14□□□□□ -0.17
XRN1-212ENST00000486211 EHMT2Q96KQ7 1210 aa13.99□□□□□ -0.17
XRN1-212ENST00000486211 ATP1B4Q9UN42 357 aaPredicted RBP13.99□□□□□ -0.17
XRN1-212ENST00000486211 RNF17Q9BXT8 1623 aaKnown RBP13.99□□□□□ -0.17
XRN1-212ENST00000486211 LRRC7Q96NW7 1537 aa13.99□□□□□ -0.17
XRN1-212ENST00000486211 STRCP1A6NGW2 1772 aa13.99□□□□□ -0.17
XRN1-212ENST00000486211 MED14O60244 1454 aa13.98□□□□□ -0.17
XRN1-212ENST00000486211 A2MP01023 1474 aa13.98□□□□□ -0.17
XRN1-212ENST00000486211 INO80Q9ULG1 1556 aaPredicted RBP13.97□□□□□ -0.17
XRN1-212ENST00000486211 ATP7AQ04656 1500 aa13.97□□□□□ -0.17
XRN1-212ENST00000486211 CDC42BPAQ5VT25 1732 aa13.97□□□□□ -0.17
XRN1-212ENST00000486211 SPAG9O60271 1321 aaKnown RBP13.96□□□□□ -0.17
XRN1-212ENST00000486211 SYCP2Q9BX26 1530 aa13.96□□□□□ -0.17
XRN1-212ENST00000486211 SETD1AO15047 1707 aaKnown RBP13.96□□□□□ -0.17
XRN1-212ENST00000486211 DEPDC5O75140 1603 aa13.96□□□□□ -0.17
XRN1-212ENST00000486211 NPHP4O75161 1426 aaPredicted RBP13.96□□□□□ -0.18
XRN1-212ENST00000486211 GGT6Q6P531 493 aa13.95□□□□□ -0.18
XRN1-212ENST00000486211 SYNMO15061 1565 aa13.95□□□□□ -0.18
XRN1-212ENST00000486211 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.95□□□□□ -0.18
XRN1-212ENST00000486211 ARHGAP35Q9NRY4 1499 aa13.94□□□□□ -0.18
XRN1-212ENST00000486211 FXR2P51116 673 aaKnown RBP eCLIP13.94□□□□□ -0.18
XRN1-212ENST00000486211 MKRN4PQ13434 485 aaPredicted RBP13.94□□□□□ -0.18
XRN1-212ENST00000486211 ANKLE2Q86XL3 938 aa13.94□□□□□ -0.18
XRN1-212ENST00000486211 TNRQ92752 1358 aa13.94□□□□□ -0.18
XRN1-212ENST00000486211 EEA1Q15075 1411 aa13.93□□□□□ -0.18
XRN1-212ENST00000486211 IQGAP1P46940 1657 aa13.92□□□□□ -0.18
XRN1-212ENST00000486211 FBXO31Q5XUX0 539 aaPredicted RBP13.91□□□□□ -0.18
XRN1-212ENST00000486211 HNRNPMP52272 730 aaKnown RBP eCLIP13.9□□□□□ -0.18
XRN1-212ENST00000486211 PZPP20742 1482 aa13.9□□□□□ -0.18
XRN1-212ENST00000486211 KIAA1107Q9UPP5 1409 aa13.89□□□□□ -0.19
XRN1-212ENST00000486211 ADGBQ8N7X0 1667 aa13.88□□□□□ -0.19
XRN1-212ENST00000486211 THEMISQ8N1K5 641 aaPredicted RBP13.88□□□□□ -0.19
XRN1-212ENST00000486211 UGGT1Q9NYU2 1555 aa13.88□□□□□ -0.19
XRN1-212ENST00000486211 NLRP1Q9C000 1473 aa13.87□□□□□ -0.19
XRN1-212ENST00000486211 GPATCH8Q9UKJ3 1502 aaKnown RBP13.87□□□□□ -0.19
XRN1-212ENST00000486211 SP7Q8TDD2 431 aaPredicted RBP13.87□□□□□ -0.19
XRN1-212ENST00000486211 ZNF692Q9BU19 519 aaPredicted RBP13.87□□□□□ -0.19
XRN1-212ENST00000486211 ZNF777Q9ULD5 760 aaPredicted RBP13.87□□□□□ -0.19
XRN1-212ENST00000486211 XIRP1Q702N8 1843 aaKnown RBP13.86□□□□□ -0.19
XRN1-212ENST00000486211 FAM135BQ49AJ0 1406 aa13.86□□□□□ -0.19
XRN1-212ENST00000486211 ZC3H13Q5T200 1668 aaKnown RBP13.85□□□□□ -0.19
XRN1-212ENST00000486211 FAM135AQ9P2D6 1515 aa13.85□□□□□ -0.19
XRN1-212ENST00000486211 MIA2Q96PC5 1412 aa13.85□□□□□ -0.19
XRN1-212ENST00000486211 CCDC18Q5T9S5 1454 aa13.85□□□□□ -0.19
XRN1-212ENST00000486211 HAX1O00165 279 aa13.84□□□□□ -0.19
XRN1-212ENST00000486211 UPF1Q92900 1129 aaKnown RBP eCLIP13.84□□□□□ -0.19
XRN1-212ENST00000486211 KDM5DQ9BY66 1539 aa13.84□□□□□ -0.19
XRN1-212ENST00000486211 PLEKHH2Q8IVE3 1493 aa13.83□□□□□ -0.2
XRN1-212ENST00000486211 SPDYE1Q8NFV5 336 aaPredicted RBP13.81□□□□□ -0.2
XRN1-212ENST00000486211 DHX29Q7Z478 1369 aaKnown RBP13.81□□□□□ -0.2
XRN1-212ENST00000486211 CASKIN1Q8WXD9 1431 aa13.81□□□□□ -0.2
XRN1-212ENST00000486211 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
XRN1-212ENST00000486211 SSUH2Q9Y2M2 353 aa13.8□□□□□ -0.2
XRN1-212ENST00000486211 ROBO1Q9Y6N7 1651 aa13.78□□□□□ -0.2
XRN1-212ENST00000486211 RTEL1-TNFRSF6BF6WH68 1400 aa13.77□□□□□ -0.21
XRN1-212ENST00000486211 MBD5Q9P267 1494 aa13.77□□□□□ -0.21
XRN1-212ENST00000486211 CFDP1Q9UEE9 299 aaPredicted RBP13.77□□□□□ -0.21
XRN1-212ENST00000486211 KIF3BO15066 747 aa13.76□□□□□ -0.21
XRN1-212ENST00000486211 WASHC2CQ9Y4E1 1318 aa13.75□□□□□ -0.21
XRN1-212ENST00000486211 SCAF11Q99590 1463 aaKnown RBP13.74□□□□□ -0.21
XRN1-212ENST00000486211 UBTFP17480 764 aaKnown RBP13.74□□□□□ -0.21
XRN1-212ENST00000486211 ZNF644Q9H582 1327 aaPredicted RBP13.73□□□□□ -0.21
XRN1-212ENST00000486211 MAP3K1Q13233 1512 aa13.73□□□□□ -0.21
XRN1-212ENST00000486211 NCOA2Q15596 1464 aa13.73□□□□□ -0.21
XRN1-212ENST00000486211 ARHGAP23Q9P227 1491 aa13.73□□□□□ -0.21
XRN1-212ENST00000486211 UBR1Q8IWV7 1749 aa13.73□□□□□ -0.21
XRN1-212ENST00000486211 SRCAPQ6ZRS2 3230 aa13.72□□□□□ -0.21
XRN1-212ENST00000486211 LTKP29376 864 aa13.72□□□□□ -0.21
XRN1-212ENST00000486211 LRP6O75581 1613 aa13.72□□□□□ -0.21
XRN1-212ENST00000486211 TMEM94Q12767 1356 aa13.71□□□□□ -0.21
XRN1-212ENST00000486211 CCNB3Q8WWL7 1395 aa13.71□□□□□ -0.21
XRN1-212ENST00000486211 ERVK-7P63135 1459 aa13.71□□□□□ -0.21
XRN1-212ENST00000486211 FYCO1Q9BQS8 1478 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms