RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 MROH2AA6NES4 1674 aa27.23■■□□□ 1.95
COL6A1-204ENST00000486023 PTPRKQ15262 1439 aa27.23■■□□□ 1.95
COL6A1-204ENST00000486023 KIF15Q9NS87 1388 aa27.22■■□□□ 1.95
COL6A1-204ENST00000486023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.22■■□□□ 1.95
COL6A1-204ENST00000486023 TCOF1Q13428 1488 aaKnown RBP27.2■■□□□ 1.95
COL6A1-204ENST00000486023 DMRT2Q9Y5R5 561 aa27.19■■□□□ 1.94
COL6A1-204ENST00000486023 KDM5DQ9BY66 1539 aa27.16■■□□□ 1.94
COL6A1-204ENST00000486023 DUOX2Q9NRD8 1548 aa27.16■■□□□ 1.94
COL6A1-204ENST00000486023 SHANK2Q9UPX8 1470 aa27.15■■□□□ 1.94
COL6A1-204ENST00000486023 ANKRD30AQ9BXX3 1397 aa27.15■■□□□ 1.94
COL6A1-204ENST00000486023 ITGAEP38570 1179 aa27.14■■□□□ 1.94
COL6A1-204ENST00000486023 DNMT1P26358 1616 aaKnown RBP27.13■■□□□ 1.93
COL6A1-204ENST00000486023 NCKAP5LQ9HCH0 1330 aa27.13■■□□□ 1.93
COL6A1-204ENST00000486023 TNRQ92752 1358 aa27.11■■□□□ 1.93
COL6A1-204ENST00000486023 CROCC2H7BZ55 1655 aa27.09■■□□□ 1.93
COL6A1-204ENST00000486023 PZPP20742 1482 aa27.08■■□□□ 1.93
COL6A1-204ENST00000486023 CAMSAP1Q5T5Y3 1602 aa27.08■■□□□ 1.93
COL6A1-204ENST00000486023 STRCQ7RTU9 1775 aa27.06■■□□□ 1.92
COL6A1-204ENST00000486023 NCOA1Q15788 1441 aa27.06■■□□□ 1.92
COL6A1-204ENST00000486023 ERBINQ96RT1 1412 aa27.06■■□□□ 1.92
COL6A1-204ENST00000486023 ABCC3O15438 1527 aa27.06■■□□□ 1.92
COL6A1-204ENST00000486023 MYO3AQ8NEV4 1616 aa27.05■■□□□ 1.92
COL6A1-204ENST00000486023 RNF17Q9BXT8 1623 aaKnown RBP27.05■■□□□ 1.92
COL6A1-204ENST00000486023 EIF2AK4Q9P2K8 1649 aaKnown RBP27.05■■□□□ 1.92
COL6A1-204ENST00000486023 CEP170BQ9Y4F5 1589 aaPredicted RBP27.04■■□□□ 1.92
COL6A1-204ENST00000486023 KANK1Q14678 1352 aa27.03■■□□□ 1.92
COL6A1-204ENST00000486023 CERKQ8TCT0 537 aa27.03■■□□□ 1.92
COL6A1-204ENST00000486023 FAM135AQ9P2D6 1515 aa27.03■■□□□ 1.92
COL6A1-204ENST00000486023 FBXO41Q8TF61 875 aa27.02■■□□□ 1.92
COL6A1-204ENST00000486023 A2ML1A8K2U0 1454 aa27.01■■□□□ 1.91
COL6A1-204ENST00000486023 PTPRTO14522 1441 aa26.99■■□□□ 1.91
COL6A1-204ENST00000486023 MROH1Q8NDA8 1641 aa26.99■■□□□ 1.91
COL6A1-204ENST00000486023 PKD2Q13563 968 aa26.99■■□□□ 1.91
COL6A1-204ENST00000486023 THEMISQ8N1K5 641 aaPredicted RBP26.97■■□□□ 1.91
COL6A1-204ENST00000486023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.95■■□□□ 1.9
COL6A1-204ENST00000486023 ADGRL2O95490 1459 aa26.94■■□□□ 1.9
COL6A1-204ENST00000486023 CEP152O94986 1710 aa26.94■■□□□ 1.9
COL6A1-204ENST00000486023 ANKRD50Q9ULJ7 1429 aa26.94■■□□□ 1.9
COL6A1-204ENST00000486023 ZNF142P52746 1687 aaPredicted RBP26.93■■□□□ 1.9
COL6A1-204ENST00000486023 ZC3H13Q5T200 1668 aaKnown RBP26.93■■□□□ 1.9
COL6A1-204ENST00000486023 ANKLE2Q86XL3 938 aa26.92■■□□□ 1.9
COL6A1-204ENST00000486023 ERVK-7P63135 1459 aa26.92■■□□□ 1.9
COL6A1-204ENST00000486023 PRDM15P57071 1507 aaPredicted RBP26.91■■□□□ 1.9
COL6A1-204ENST00000486023 PLA2R1Q13018 1463 aa26.91■■□□□ 1.9
COL6A1-204ENST00000486023 NLRP1Q9C000 1473 aa26.91■■□□□ 1.9
COL6A1-204ENST00000486023 UGGT1Q9NYU2 1555 aa26.88■■□□□ 1.89
COL6A1-204ENST00000486023 CFAP65Q6ZU64 1925 aaKnown RBP26.88■■□□□ 1.89
COL6A1-204ENST00000486023 STAG3Q9UJ98 1225 aa26.87■■□□□ 1.89
COL6A1-204ENST00000486023 ZNF335Q9H4Z2 1342 aaPredicted RBP26.87■■□□□ 1.89
COL6A1-204ENST00000486023 SPATA31D1Q6ZQQ2 1576 aa26.86■■□□□ 1.89
COL6A1-204ENST00000486023 ARHGAP31Q2M1Z3 1444 aa26.84■■□□□ 1.89
COL6A1-204ENST00000486023 DEPDC5O75140 1603 aa26.83■■□□□ 1.89
COL6A1-204ENST00000486023 ROCK1Q13464 1354 aa26.83■■□□□ 1.88
COL6A1-204ENST00000486023 IDI1Q13907 227 aa26.78■■□□□ 1.88
COL6A1-204ENST00000486023 LMTK2Q8IWU2 1503 aa26.76■■□□□ 1.87
COL6A1-204ENST00000486023 TXNDC2Q86VQ3 553 aa26.76■■□□□ 1.87
COL6A1-204ENST00000486023 VWDEQ8N2E2 1590 aa26.75■■□□□ 1.87
COL6A1-204ENST00000486023 RRBP1Q9P2E9 1410 aaKnown RBP26.74■■□□□ 1.87
COL6A1-204ENST00000486023 LTBP4Q8N2S1 1624 aa26.74■■□□□ 1.87
COL6A1-204ENST00000486023 NPHP4O75161 1426 aaPredicted RBP26.73■■□□□ 1.87
COL6A1-204ENST00000486023 NUP155O75694 1391 aa26.73■■□□□ 1.87
COL6A1-204ENST00000486023 LTKP29376 864 aa26.72■■□□□ 1.87
COL6A1-204ENST00000486023 EID1Q9Y6B2 187 aa26.72■■□□□ 1.87
COL6A1-204ENST00000486023 EFCAB6Q5THR3 1501 aa26.7■■□□□ 1.87
COL6A1-204ENST00000486023 CHGAP10645 457 aaKnown RBP26.7■■□□□ 1.86
COL6A1-204ENST00000486023 NEURL4Q96JN8 1562 aa26.7■■□□□ 1.86
COL6A1-204ENST00000486023 SENP3Q9H4L4 574 aaPredicted RBP26.69■■□□□ 1.86
COL6A1-204ENST00000486023 SLC52A1Q9NWF4 448 aa26.68■■□□□ 1.86
COL6A1-204ENST00000486023 POLR1AO95602 1720 aaPredicted RBP26.68■■□□□ 1.86
COL6A1-204ENST00000486023 NOS1P29475 1434 aa26.66■■□□□ 1.86
COL6A1-204ENST00000486023 UBR1Q8IWV7 1749 aa26.66■■□□□ 1.86
COL6A1-204ENST00000486023 PIK3C2BO00750 1634 aa26.65■■□□□ 1.86
COL6A1-204ENST00000486023 BCANQ96GW7 911 aa26.65■■□□□ 1.86
COL6A1-204ENST00000486023 UBAP1LF5GYI3 381 aa26.64■■□□□ 1.86
COL6A1-204ENST00000486023 UNC13BO14795 1591 aa26.63■■□□□ 1.85
COL6A1-204ENST00000486023 SYNMO15061 1565 aa26.63■■□□□ 1.85
COL6A1-204ENST00000486023 MED14O60244 1454 aa26.63■■□□□ 1.85
COL6A1-204ENST00000486023 SCAF11Q99590 1463 aaKnown RBP26.63■■□□□ 1.85
COL6A1-204ENST00000486023 TMEM2Q9UHN6 1383 aa26.63■■□□□ 1.85
COL6A1-204ENST00000486023 TRIM52Q96A61 297 aa26.62■■□□□ 1.85
COL6A1-204ENST00000486023 RPRD2Q5VT52 1461 aaKnown RBP26.62■■□□□ 1.85
COL6A1-204ENST00000486023 TET3O43151 1660 aa26.6■■□□□ 1.85
COL6A1-204ENST00000486023 ARHGAP23Q9P227 1491 aa26.58■■□□□ 1.85
COL6A1-204ENST00000486023 NAIPQ13075 1403 aa26.57■■□□□ 1.84
COL6A1-204ENST00000486023 IQGAP1P46940 1657 aa26.57■■□□□ 1.84
COL6A1-204ENST00000486023 SLIT1O75093 1534 aa26.57■■□□□ 1.84
COL6A1-204ENST00000486023 SCAF1Q9H7N4 1312 aaKnown RBP26.57■■□□□ 1.84
COL6A1-204ENST00000486023 SLC26A8Q96RN1 970 aa26.56■■□□□ 1.84
COL6A1-204ENST00000486023 PPP1R15AO75807 674 aaPredicted RBP26.55■■□□□ 1.84
COL6A1-204ENST00000486023 NUTM2DQ5VT03 806 aaPredicted RBP26.55■■□□□ 1.84
COL6A1-204ENST00000486023 IQGAP3Q86VI3 1631 aa26.54■■□□□ 1.84
COL6A1-204ENST00000486023 IQSEC2Q5JU85 1478 aa26.54■■□□□ 1.84
COL6A1-204ENST00000486023 GCC2Q8IWJ2 1684 aa26.53■■□□□ 1.84
COL6A1-204ENST00000486023 ADGRB3O60242 1522 aa26.52■■□□□ 1.84
COL6A1-204ENST00000486023 PIP4K2BP78356 416 aa26.52■■□□□ 1.84
COL6A1-204ENST00000486023 E9PCH4 1651 aa26.51■■□□□ 1.83
COL6A1-204ENST00000486023 HDGFP51858 240 aaKnown RBP26.51■■□□□ 1.83
COL6A1-204ENST00000486023 CPS1P31327 1500 aa26.5■■□□□ 1.83
COL6A1-204ENST00000486023 TOM1O60784 492 aa26.47■■□□□ 1.83
COL6A1-204ENST00000486023 HFM1A2PYH4 1435 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms