RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RTEL1-TNFRSF6BF6WH68 1400 aa22.22■■□□□ 1.15
SQSTM1-208ENST00000485412 CCDC141Q6ZP82 1450 aa22.22■■□□□ 1.15
SQSTM1-208ENST00000485412 DHX29Q7Z478 1369 aaKnown RBP22.19■■□□□ 1.14
SQSTM1-208ENST00000485412 SCAF1Q9H7N4 1312 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-208ENST00000485412 LOC105371045A0A1W2PR82 267 aa22.17■■□□□ 1.14
SQSTM1-208ENST00000485412 TNRQ92752 1358 aa22.16■■□□□ 1.14
SQSTM1-208ENST00000485412 ARHGEF5Q12774 1597 aa22.16■■□□□ 1.14
SQSTM1-208ENST00000485412 KIF3BO15066 747 aa22.15■■□□□ 1.14
SQSTM1-208ENST00000485412 KDM5DQ9BY66 1539 aa22.15■■□□□ 1.14
SQSTM1-208ENST00000485412 NEURL4Q96JN8 1562 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 CPS1P31327 1500 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 FAM135AQ9P2D6 1515 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 FBXO31Q5XUX0 539 aaPredicted RBP22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 PZPP20742 1482 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 LRRC9Q6ZRR7 1453 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 VPS8Q8N3P4 1428 aa22.13■■□□□ 1.13
SQSTM1-208ENST00000485412 PIP4K2BP78356 416 aa22.12■■□□□ 1.13
SQSTM1-208ENST00000485412 SHANK2Q9UPX8 1470 aa22.1■■□□□ 1.13
SQSTM1-208ENST00000485412 TOM1O60784 492 aa22.1■■□□□ 1.13
SQSTM1-208ENST00000485412 WASHC2CQ9Y4E1 1318 aa22.09■■□□□ 1.13
SQSTM1-208ENST00000485412 HSPA1LP34931 641 aa22.08■■□□□ 1.13
SQSTM1-208ENST00000485412 KANK4Q5T7N3 995 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-208ENST00000485412 ANKLE2Q86XL3 938 aa22.07■■□□□ 1.12
SQSTM1-208ENST00000485412 RNF17Q9BXT8 1623 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 RSPH4AQ5TD94 716 aa22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 THEMISQ8N1K5 641 aaPredicted RBP22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 MED1Q15648 1581 aaPredicted RBP22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 MAST1Q9Y2H9 1570 aa22.06■■□□□ 1.12
SQSTM1-208ENST00000485412 NLRP1Q9C000 1473 aa22.05■■□□□ 1.12
SQSTM1-208ENST00000485412 UGGT1Q9NYU2 1555 aa22.04■■□□□ 1.12
SQSTM1-208ENST00000485412 MIA2Q96PC5 1412 aa22.04■■□□□ 1.12
SQSTM1-208ENST00000485412 VWDEQ8N2E2 1590 aa22.04■■□□□ 1.12
SQSTM1-208ENST00000485412 MROH1Q8NDA8 1641 aa22.03■■□□□ 1.12
SQSTM1-208ENST00000485412 DEPDC5O75140 1603 aa22.02■■□□□ 1.12
SQSTM1-208ENST00000485412 NPHP4O75161 1426 aaPredicted RBP22.02■■□□□ 1.12
SQSTM1-208ENST00000485412 CEP152O94986 1710 aa22.02■■□□□ 1.12
SQSTM1-208ENST00000485412 TSPY4P0CV99 314 aa22.01■■□□□ 1.11
SQSTM1-208ENST00000485412 TSPY10P0CW01 314 aa22.01■■□□□ 1.11
SQSTM1-208ENST00000485412 CFAP65Q6ZU64 1925 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-208ENST00000485412 IQGAP1P46940 1657 aa22.01■■□□□ 1.11
SQSTM1-208ENST00000485412 ABCC3O15438 1527 aa22.01■■□□□ 1.11
SQSTM1-208ENST00000485412 MAP3K1Q13233 1512 aa22■■□□□ 1.11
SQSTM1-208ENST00000485412 EIF2AK4Q9P2K8 1649 aaKnown RBP21.99■■□□□ 1.11
SQSTM1-208ENST00000485412 MED14O60244 1454 aa21.99■■□□□ 1.11
SQSTM1-208ENST00000485412 MYOM3Q5VTT5 1437 aa21.98■■□□□ 1.11
SQSTM1-208ENST00000485412 ZC3H13Q5T200 1668 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-208ENST00000485412 CROCC2H7BZ55 1655 aa21.97■■□□□ 1.11
SQSTM1-208ENST00000485412 PHF23Q9BUL5 403 aaPredicted RBP21.94■■□□□ 1.1
SQSTM1-208ENST00000485412 STRCP1A6NGW2 1772 aa21.93■■□□□ 1.1
SQSTM1-208ENST00000485412 ALKQ9UM73 1620 aa21.92■■□□□ 1.1
SQSTM1-208ENST00000485412 ERVK-7P63135 1459 aa21.92■■□□□ 1.1
SQSTM1-208ENST00000485412 SYNMO15061 1565 aa21.91■■□□□ 1.1
SQSTM1-208ENST00000485412 PTPN23Q9H3S7 1636 aa21.9■■□□□ 1.1
SQSTM1-208ENST00000485412 DUOX2Q9NRD8 1548 aa21.9■■□□□ 1.1
SQSTM1-208ENST00000485412 UBR1Q8IWV7 1749 aa21.89■■□□□ 1.1
SQSTM1-208ENST00000485412 SENP3Q9H4L4 574 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-208ENST00000485412 LRRC7Q96NW7 1537 aa21.89■■□□□ 1.09
SQSTM1-208ENST00000485412 ABCC5O15440 1437 aa21.88■■□□□ 1.09
SQSTM1-208ENST00000485412 PRDM15P57071 1507 aaPredicted RBP21.86■■□□□ 1.09
SQSTM1-208ENST00000485412 KIF15Q9NS87 1388 aa21.84■■□□□ 1.09
SQSTM1-208ENST00000485412 SCAF11Q99590 1463 aaKnown RBP21.83■■□□□ 1.08
SQSTM1-208ENST00000485412 DAPK1P53355 1430 aa21.8■■□□□ 1.08
SQSTM1-208ENST00000485412 RRP7BPQ9NSQ0 103 aa21.8■■□□□ 1.08
SQSTM1-208ENST00000485412 FGD6Q6ZV73 1430 aa21.8■■□□□ 1.08
SQSTM1-208ENST00000485412 ERBINQ96RT1 1412 aa21.79■■□□□ 1.08
SQSTM1-208ENST00000485412 PIK3C2BO00750 1634 aa21.78■■□□□ 1.08
SQSTM1-208ENST00000485412 TXNDC2Q86VQ3 553 aa21.77■■□□□ 1.08
SQSTM1-208ENST00000485412 SLIT1O75093 1534 aa21.76■■□□□ 1.07
SQSTM1-208ENST00000485412 XIRP1Q702N8 1843 aaKnown RBP21.76■■□□□ 1.07
SQSTM1-208ENST00000485412 ARHGAP23Q9P227 1491 aa21.76■■□□□ 1.07
SQSTM1-208ENST00000485412 ARHGAP31Q2M1Z3 1444 aa21.75■■□□□ 1.07
SQSTM1-208ENST00000485412 LTKP29376 864 aa21.75■■□□□ 1.07
SQSTM1-208ENST00000485412 EID1Q9Y6B2 187 aa21.75■■□□□ 1.07
SQSTM1-208ENST00000485412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.74■■□□□ 1.07
SQSTM1-208ENST00000485412 CHIC2Q9UKJ5 165 aa21.73■■□□□ 1.07
SQSTM1-208ENST00000485412 STAG3Q9UJ98 1225 aa21.71■■□□□ 1.07
SQSTM1-208ENST00000485412 APLP2Q06481 763 aa21.7■■□□□ 1.06
SQSTM1-208ENST00000485412 KANK1Q14678 1352 aa21.68■■□□□ 1.06
SQSTM1-208ENST00000485412 LMTK2Q8IWU2 1503 aa21.68■■□□□ 1.06
SQSTM1-208ENST00000485412 TMEM2Q9UHN6 1383 aa21.67■■□□□ 1.06
SQSTM1-208ENST00000485412 EFCAB6Q5THR3 1501 aa21.66■■□□□ 1.06
SQSTM1-208ENST00000485412 KDM5AP29375 1690 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-208ENST00000485412 ANKRD30AQ9BXX3 1397 aa21.65■■□□□ 1.06
SQSTM1-208ENST00000485412 MYO5BQ9ULV0 1848 aa21.64■■□□□ 1.05
SQSTM1-208ENST00000485412 ADGRL2O95490 1459 aa21.64■■□□□ 1.05
SQSTM1-208ENST00000485412 RGS17Q9UGC6 210 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-208ENST00000485412 FAM135BQ49AJ0 1406 aa21.63■■□□□ 1.05
SQSTM1-208ENST00000485412 TMEM94Q12767 1356 aa21.61■■□□□ 1.05
SQSTM1-208ENST00000485412 IDI1Q13907 227 aa21.61■■□□□ 1.05
SQSTM1-208ENST00000485412 ROBO1Q9Y6N7 1651 aa21.6■■□□□ 1.05
SQSTM1-208ENST00000485412 NOS1P29475 1434 aa21.6■■□□□ 1.05
SQSTM1-208ENST00000485412 ADGRB3O60242 1522 aa21.6■■□□□ 1.05
SQSTM1-208ENST00000485412 KCNA6P17658 529 aa21.59■■□□□ 1.05
SQSTM1-208ENST00000485412 FAM50AQ14320 339 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-208ENST00000485412 PROSER2Q86WR7 435 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-208ENST00000485412 TET3O43151 1660 aa21.57■■□□□ 1.04
SQSTM1-208ENST00000485412 SLC26A8Q96RN1 970 aa21.57■■□□□ 1.04
SQSTM1-208ENST00000485412 GCC2Q8IWJ2 1684 aa21.56■■□□□ 1.04
SQSTM1-208ENST00000485412 BCANQ96GW7 911 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms