RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 DIP2CQ9Y2E4 1556 aa8.14□□□□□ -1.11
COL17A1-206ENST00000483876 ZNF518AQ6AHZ1 1483 aa8.14□□□□□ -1.11
COL17A1-206ENST00000483876 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.14□□□□□ -1.11
COL17A1-206ENST00000483876 A2ML1A8K2U0 1454 aa8.13□□□□□ -1.11
COL17A1-206ENST00000483876 CCDC18Q5T9S5 1454 aa8.13□□□□□ -1.11
COL17A1-206ENST00000483876 PLCH2O75038 1416 aa8.12□□□□□ -1.11
COL17A1-206ENST00000483876 NPHP4O75161 1426 aaPredicted RBP8.12□□□□□ -1.11
COL17A1-206ENST00000483876 CCNB3Q8WWL7 1395 aa8.12□□□□□ -1.11
COL17A1-206ENST00000483876 MROH2AA6NES4 1674 aa8.12□□□□□ -1.11
COL17A1-206ENST00000483876 DNMT1P26358 1616 aaKnown RBP8.12□□□□□ -1.11
COL17A1-206ENST00000483876 EFCAB2Q5VUJ9 269 aa8.12□□□□□ -1.11
COL17A1-206ENST00000483876 ATP1B4Q9UN42 357 aaPredicted RBP8.12□□□□□ -1.11
COL17A1-206ENST00000483876 SYNMO15061 1565 aa8.12□□□□□ -1.11
COL17A1-206ENST00000483876 POLR1AO95602 1720 aaPredicted RBP8.12□□□□□ -1.11
COL17A1-206ENST00000483876 ATAD2Q6PL18 1390 aa8.11□□□□□ -1.11
COL17A1-206ENST00000483876 CDK13Q14004 1512 aaKnown RBP8.11□□□□□ -1.11
COL17A1-206ENST00000483876 RGS12O14924 1447 aa8.11□□□□□ -1.11
COL17A1-206ENST00000483876 LRP6O75581 1613 aa8.11□□□□□ -1.11
COL17A1-206ENST00000483876 SPATA31A6Q5VVP1 1343 aa8.1□□□□□ -1.11
COL17A1-206ENST00000483876 CDK11AQ9UQ88 783 aaPredicted RBP8.1□□□□□ -1.11
COL17A1-206ENST00000483876 KDM5CP41229 1560 aa8.1□□□□□ -1.11
COL17A1-206ENST00000483876 MTUS2Q5JR59 1369 aa8.1□□□□□ -1.11
COL17A1-206ENST00000483876 MED14O60244 1454 aa8.09□□□□□ -1.11
COL17A1-206ENST00000483876 LRP5O75197 1615 aa8.09□□□□□ -1.11
COL17A1-206ENST00000483876 ABCA6Q8N139 1617 aa8.09□□□□□ -1.11
COL17A1-206ENST00000483876 RAPGEF6Q8TEU7 1601 aa8.09□□□□□ -1.11
COL17A1-206ENST00000483876 STRCP1A6NGW2 1772 aa8.08□□□□□ -1.12
COL17A1-206ENST00000483876 THEMISQ8N1K5 641 aaPredicted RBP8.08□□□□□ -1.12
COL17A1-206ENST00000483876 ROBO1Q9Y6N7 1651 aa8.08□□□□□ -1.12
COL17A1-206ENST00000483876 NUP153P49790 1475 aaKnown RBP8.07□□□□□ -1.12
COL17A1-206ENST00000483876 MLH3Q9UHC1 1453 aa8.07□□□□□ -1.12
COL17A1-206ENST00000483876 RBM6P78332 1123 aaKnown RBP8.07□□□□□ -1.12
COL17A1-206ENST00000483876 CCER1Q8TC90 406 aaPredicted RBP8.07□□□□□ -1.12
COL17A1-206ENST00000483876 CLSPNQ9HAW4 1339 aa8.06□□□□□ -1.12
COL17A1-206ENST00000483876 CCDC125Q86Z20 511 aa8.06□□□□□ -1.12
COL17A1-206ENST00000483876 EHBP1L1Q8N3D4 1523 aa8.06□□□□□ -1.12
COL17A1-206ENST00000483876 AFF2P51816 1311 aa8.05□□□□□ -1.12
COL17A1-206ENST00000483876 ABCC1P33527 1531 aa8.05□□□□□ -1.12
COL17A1-206ENST00000483876 QTRT2Q9H974 415 aaKnown RBP8.05□□□□□ -1.12
COL17A1-206ENST00000483876 CLTCQ00610 1675 aaKnown RBP8.05□□□□□ -1.12
COL17A1-206ENST00000483876 NCOA2Q15596 1464 aa8.04□□□□□ -1.12
COL17A1-206ENST00000483876 ACIN1Q9UKV3 1341 aaKnown RBP8.03□□□□□ -1.12
COL17A1-206ENST00000483876 MYOM3Q5VTT5 1437 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 FGD6Q6ZV73 1430 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 MIA2Q96PC5 1412 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 DEPDC5O75140 1603 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 IQGAP1P46940 1657 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 NGLY1Q96IV0 654 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 PHLPP1O60346 1717 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 LRRIQ1Q96JM4 1722 aa8.03□□□□□ -1.12
COL17A1-206ENST00000483876 TNRQ92752 1358 aa8.02□□□□□ -1.13
COL17A1-206ENST00000483876 GGT6Q6P531 493 aa8.02□□□□□ -1.13
COL17A1-206ENST00000483876 KDM5DQ9BY66 1539 aa8.02□□□□□ -1.13
COL17A1-206ENST00000483876 FAM50AQ14320 339 aaKnown RBP8.01□□□□□ -1.13
COL17A1-206ENST00000483876 FAM135AQ9P2D6 1515 aa8.01□□□□□ -1.13
COL17A1-206ENST00000483876 TROQ12816 1431 aaPredicted RBP8.01□□□□□ -1.13
COL17A1-206ENST00000483876 TMEM94Q12767 1356 aa8□□□□□ -1.13
COL17A1-206ENST00000483876 C1QTNF8P60827 252 aa8□□□□□ -1.13
COL17A1-206ENST00000483876 FBXO31Q5XUX0 539 aaPredicted RBP8□□□□□ -1.13
COL17A1-206ENST00000483876 SLAIN2Q9P270 581 aa8□□□□□ -1.13
COL17A1-206ENST00000483876 SETD5Q9C0A6 1442 aa8□□□□□ -1.13
COL17A1-206ENST00000483876 ITSN2Q9NZM3 1697 aa7.99□□□□□ -1.13
COL17A1-206ENST00000483876 PSDA5PKW4 1024 aaPredicted RBP7.99□□□□□ -1.13
COL17A1-206ENST00000483876 UGGT1Q9NYU2 1555 aa7.99□□□□□ -1.13
COL17A1-206ENST00000483876 NHSL1Q5SYE7 1610 aa7.99□□□□□ -1.13
COL17A1-206ENST00000483876 XIRP1Q702N8 1843 aaKnown RBP7.99□□□□□ -1.13
COL17A1-206ENST00000483876 ARHGAP5Q13017 1502 aa7.98□□□□□ -1.13
COL17A1-206ENST00000483876 C8orf37Q96NL8 207 aa7.98□□□□□ -1.13
COL17A1-206ENST00000483876 COL16A1Q07092 1604 aaPredicted RBP7.98□□□□□ -1.13
COL17A1-206ENST00000483876 NWD1Q149M9 1564 aa7.97□□□□□ -1.13
COL17A1-206ENST00000483876 DHX57Q6P158 1386 aaKnown RBP7.97□□□□□ -1.13
COL17A1-206ENST00000483876 MYO5CQ9NQX4 1742 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 DCAF8L1A6NGE4 600 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 SLC34A2O95436 690 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 ITGAEP38570 1179 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 DEFB132Q7Z7B7 95 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 ZNF784Q8NCA9 323 aaPredicted RBP7.96□□□□□ -1.14
COL17A1-206ENST00000483876 RAB3GAP2Q9H2M9 1393 aa7.96□□□□□ -1.14
COL17A1-206ENST00000483876 HFM1A2PYH4 1435 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 NLRP1Q9C000 1473 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 KIDINS220Q9ULH0 1771 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 ATP7AQ04656 1500 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 RSPH4AQ5TD94 716 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 PROSER2Q86WR7 435 aaPredicted RBP7.95□□□□□ -1.14
COL17A1-206ENST00000483876 TIMELESSQ9UNS1 1208 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 PTPN23Q9H3S7 1636 aa7.95□□□□□ -1.14
COL17A1-206ENST00000483876 GPATCH8Q9UKJ3 1502 aaKnown RBP7.94□□□□□ -1.14
COL17A1-206ENST00000483876 CFDP1Q9UEE9 299 aaPredicted RBP7.94□□□□□ -1.14
COL17A1-206ENST00000483876 MSH6P52701 1360 aa7.94□□□□□ -1.14
COL17A1-206ENST00000483876 ROCK1Q13464 1354 aa7.94□□□□□ -1.14
COL17A1-206ENST00000483876 BLMP54132 1417 aaPredicted RBP7.94□□□□□ -1.14
COL17A1-206ENST00000483876 SHPRHQ149N8 1683 aa7.93□□□□□ -1.14
COL17A1-206ENST00000483876 ZC3H13Q5T200 1668 aaKnown RBP7.93□□□□□ -1.14
COL17A1-206ENST00000483876 SF3B2Q13435 895 aaKnown RBP7.93□□□□□ -1.14
COL17A1-206ENST00000483876 BCL9LQ86UU0 1499 aa7.92□□□□□ -1.14
COL17A1-206ENST00000483876 KCNA6P17658 529 aa7.91□□□□□ -1.14
COL17A1-206ENST00000483876 PCDH10Q9P2E7 1040 aa7.91□□□□□ -1.14
COL17A1-206ENST00000483876 TRPC5Q9UL62 973 aaPredicted RBP7.91□□□□□ -1.14
COL17A1-206ENST00000483876 SPAG9O60271 1321 aaKnown RBP7.91□□□□□ -1.14
COL17A1-206ENST00000483876 NAIPQ13075 1403 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms