RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KDM5DQ9BY66 1539 aa15.01□□□□□ -0.01
USP39-215ENST00000481409 UNC13BO14795 1591 aa14.99□□□□□ -0.01
USP39-215ENST00000481409 DIP2CQ9Y2E4 1556 aa14.99□□□□□ -0.01
USP39-215ENST00000481409 KDM6BO15054 1643 aa14.99□□□□□ -0.01
USP39-215ENST00000481409 ABCA6Q8N139 1617 aa14.99□□□□□ -0.01
USP39-215ENST00000481409 ATP10AO60312 1499 aa14.98□□□□□ -0.01
USP39-215ENST00000481409 COL17A1Q9UMD9 1497 aaPredicted RBP14.98□□□□□ -0.01
USP39-215ENST00000481409 DHX57Q6P158 1386 aaKnown RBP14.98□□□□□ -0.01
USP39-215ENST00000481409 DEPDC5O75140 1603 aa14.97□□□□□ -0.01
USP39-215ENST00000481409 CCER1Q8TC90 406 aaPredicted RBP14.97□□□□□ -0.01
USP39-215ENST00000481409 AGLP35573 1532 aa14.96□□□□□ -0.02
USP39-215ENST00000481409 ARHGEF40Q8TER5 1519 aa14.96□□□□□ -0.02
USP39-215ENST00000481409 TRIM52Q96A61 297 aa14.95□□□□□ -0.02
USP39-215ENST00000481409 RNF17Q9BXT8 1623 aaKnown RBP14.95□□□□□ -0.02
USP39-215ENST00000481409 FAM135AQ9P2D6 1515 aa14.94□□□□□ -0.02
USP39-215ENST00000481409 ZEB1P37275 1124 aaPredicted RBP14.94□□□□□ -0.02
USP39-215ENST00000481409 IQGAP3Q86VI3 1631 aa14.93□□□□□ -0.02
USP39-215ENST00000481409 KANK1Q14678 1352 aa14.93□□□□□ -0.02
USP39-215ENST00000481409 YEATS2Q9ULM3 1422 aa14.92□□□□□ -0.02
USP39-215ENST00000481409 PRDM15P57071 1507 aaPredicted RBP14.92□□□□□ -0.02
USP39-215ENST00000481409 NUP155O75694 1391 aa14.92□□□□□ -0.02
USP39-215ENST00000481409 MPHOSPH9Q99550 1183 aa14.91□□□□□ -0.02
USP39-215ENST00000481409 VWDEQ8N2E2 1590 aa14.9□□□□□ -0.02
USP39-215ENST00000481409 PZPP20742 1482 aa14.9□□□□□ -0.02
USP39-215ENST00000481409 KIF3BO15066 747 aa14.9□□□□□ -0.02
USP39-215ENST00000481409 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
USP39-215ENST00000481409 LMTK2Q8IWU2 1503 aa14.88□□□□□ -0.03
USP39-215ENST00000481409 ZC3H13Q5T200 1668 aaKnown RBP14.87□□□□□ -0.03
USP39-215ENST00000481409 MROH1Q8NDA8 1641 aa14.87□□□□□ -0.03
USP39-215ENST00000481409 TET3O43151 1660 aa14.85□□□□□ -0.03
USP39-215ENST00000481409 TIMELESSQ9UNS1 1208 aa14.85□□□□□ -0.03
USP39-215ENST00000481409 RPRD2Q5VT52 1461 aaKnown RBP14.83□□□□□ -0.03
USP39-215ENST00000481409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.043e-6■□□□□ 11.3
USP39-215ENST00000481409 PKD2Q13563 968 aa14.81□□□□□ -0.04
USP39-215ENST00000481409 ANKRD30BQ9BXX2 1392 aa14.81□□□□□ -0.04
USP39-215ENST00000481409 ARHGAP31Q2M1Z3 1444 aa14.81□□□□□ -0.04
USP39-215ENST00000481409 GGT6Q6P531 493 aa14.8□□□□□ -0.04
USP39-215ENST00000481409 EFCAB6Q5THR3 1501 aa14.8□□□□□ -0.04
USP39-215ENST00000481409 ABCC3O15438 1527 aa14.79□□□□□ -0.04
USP39-215ENST00000481409 WASHC2CQ9Y4E1 1318 aa14.79□□□□□ -0.04
USP39-215ENST00000481409 CNTLNQ9NXG0 1405 aa14.78□□□□□ -0.04
USP39-215ENST00000481409 CEP152O94986 1710 aa14.77□□□□□ -0.05
USP39-215ENST00000481409 E9PCH4 1651 aa14.77□□□□□ -0.05
USP39-215ENST00000481409 PTPRTO14522 1441 aa14.76□□□□□ -0.05
USP39-215ENST00000481409 CAMSAP1Q5T5Y3 1602 aa14.76□□□□□ -0.05
USP39-215ENST00000481409 SIGLEC1Q9BZZ2 1709 aa14.75□□□□□ -0.05
USP39-215ENST00000481409 SPHKAPQ2M3C7 1700 aa14.74□□□□□ -0.05
USP39-215ENST00000481409 ARID4BQ4LE39 1312 aaPredicted RBP14.73□□□□□ -0.05
USP39-215ENST00000481409 TRPM2O94759 1503 aa14.73□□□□□ -0.05
USP39-215ENST00000481409 ESF1Q9H501 851 aaKnown RBP14.73□□□□□ -0.05
USP39-215ENST00000481409 MROH2AA6NES4 1674 aa14.73□□□□□ -0.05
USP39-215ENST00000481409 CCDC144AA2RUR9 1427 aa14.72□□□□□ -0.05
USP39-215ENST00000481409 NEURL4Q96JN8 1562 aa14.72□□□□□ -0.05
USP39-215ENST00000481409 NPATQ14207 1427 aa14.71□□□□□ -0.05
USP39-215ENST00000481409 PLA2R1Q13018 1463 aa14.69□□□□□ -0.06
USP39-215ENST00000481409 NOS1P29475 1434 aa14.69□□□□□ -0.06
USP39-215ENST00000481409 CLTCQ00610 1675 aaKnown RBP14.69□□□□□ -0.06
USP39-215ENST00000481409 TONSLQ96HA7 1378 aa14.69□□□□□ -0.06
USP39-215ENST00000481409 STAC3Q96MF2 364 aa14.68□□□□□ -0.06
USP39-215ENST00000481409 SIN3AQ96ST3 1273 aa14.68□□□□□ -0.06
USP39-215ENST00000481409 SLC52A1Q9NWF4 448 aa14.67□□□□□ -0.06
USP39-215ENST00000481409 ZMYM3Q14202 1370 aa14.66□□□□□ -0.06
USP39-215ENST00000481409 NEUROD1Q13562 356 aa14.66□□□□□ -0.06
USP39-215ENST00000481409 FER1L4A9Z1Z3 1794 aa14.65□□□□□ -0.06
USP39-215ENST00000481409 PREX1Q8TCU6 1659 aa14.65□□□□□ -0.06
USP39-215ENST00000481409 SPATA31D1Q6ZQQ2 1576 aa14.65□□□□□ -0.06
USP39-215ENST00000481409 MLECQ14165 292 aa14.65□□□□□ -0.06
USP39-215ENST00000481409 ERVK-7P63135 1459 aa14.63□□□□□ -0.07
USP39-215ENST00000481409 PIK3C2BO00750 1634 aa14.63□□□□□ -0.07
USP39-215ENST00000481409 ADAMTSL3P82987 1691 aa14.63□□□□□ -0.07
USP39-215ENST00000481409 KIF1BO60333 1816 aa14.62□□□□□ -0.07
USP39-215ENST00000481409 CLTCL1P53675 1640 aa14.62□□□□□ -0.07
USP39-215ENST00000481409 SPATA31E1Q6ZUB1 1445 aa14.6□□□□□ -0.07
USP39-215ENST00000481409 PPP1R15AO75807 674 aaPredicted RBP14.6□□□□□ -0.07
USP39-215ENST00000481409 SYNMO15061 1565 aa14.6□□□□□ -0.07
USP39-215ENST00000481409 KDM5AP29375 1690 aaKnown RBP14.59□□□□□ -0.07
USP39-215ENST00000481409 L3MBTL2Q969R5 705 aa14.58□□□□□ -0.08
USP39-215ENST00000481409 RPGRIP1LQ68CZ1 1315 aa14.58□□□□□ -0.08
USP39-215ENST00000481409 CFAP65Q6ZU64 1925 aaKnown RBP14.58□□□□□ -0.08
USP39-215ENST00000481409 C3P01024 1663 aa14.58□□□□□ -0.08
USP39-215ENST00000481409 ADGRB3O60242 1522 aa14.57□□□□□ -0.08
USP39-215ENST00000481409 NLRP1Q9C000 1473 aa14.57□□□□□ -0.08
USP39-215ENST00000481409 MADDQ8WXG6 1647 aa14.56□□□□□ -0.08
USP39-215ENST00000481409 TNRQ92752 1358 aa14.56□□□□□ -0.08
USP39-215ENST00000481409 UHRF1BP1Q6BDS2 1440 aa14.56□□□□□ -0.08
USP39-215ENST00000481409 IDI1Q13907 227 aa14.54□□□□□ -0.08
USP39-215ENST00000481409 RIMS1Q86UR5 1692 aaKnown RBP14.53□□□□□ -0.08
USP39-215ENST00000481409 FBXO31Q5XUX0 539 aaPredicted RBP14.53□□□□□ -0.08
USP39-215ENST00000481409 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.08
USP39-215ENST00000481409 UGGT1Q9NYU2 1555 aa14.52□□□□□ -0.08
USP39-215ENST00000481409 MYOM2P54296 1465 aa14.52□□□□□ -0.08
USP39-215ENST00000481409 SETD1BQ9UPS6 1966 aaKnown RBP14.52□□□□□ -0.09
USP39-215ENST00000481409 ZFYVE9O95405 1425 aa14.5□□□□□ -0.09
USP39-215ENST00000481409 IFT172Q9UG01 1749 aa14.5□□□□□ -0.09
USP39-215ENST00000481409 HDGFP51858 240 aaKnown RBP14.5□□□□□ -0.09
USP39-215ENST00000481409 DCAF11Q8TEB1 546 aa14.5□□□□□ -0.09
USP39-215ENST00000481409 RGL3Q3MIN7 710 aa14.49□□□□□ -0.09
USP39-215ENST00000481409 PPLO60437 1756 aa14.48□□□□□ -0.09
USP39-215ENST00000481409 VGFO15240 615 aaPredicted RBP14.48□□□□□ -0.09
USP39-215ENST00000481409 STAG3Q9UJ98 1225 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms