RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 WASHC2CQ9Y4E1 1318 aa23.23■■□□□ 1.31
LIMS4-202ENST00000480598 FAM135AQ9P2D6 1515 aa23.23■■□□□ 1.31
LIMS4-202ENST00000480598 NCOA1Q15788 1441 aa23.22■■□□□ 1.31
LIMS4-202ENST00000480598 SHANK2Q9UPX8 1470 aa23.22■■□□□ 1.31
LIMS4-202ENST00000480598 CAMSAP1Q5T5Y3 1602 aa23.22■■□□□ 1.31
LIMS4-202ENST00000480598 RNF17Q9BXT8 1623 aaKnown RBP23.22■■□□□ 1.31
LIMS4-202ENST00000480598 ZNF142P52746 1687 aaPredicted RBP23.22■■□□□ 1.31
LIMS4-202ENST00000480598 DMRT2Q9Y5R5 561 aa23.21■■□□□ 1.31
LIMS4-202ENST00000480598 DAPK1P53355 1430 aa23.21■■□□□ 1.31
LIMS4-202ENST00000480598 CEP170BQ9Y4F5 1589 aaPredicted RBP23.21■■□□□ 1.31
LIMS4-202ENST00000480598 DNMT1P26358 1616 aaKnown RBP23.2■■□□□ 1.3
LIMS4-202ENST00000480598 EIF2AK4Q9P2K8 1649 aaKnown RBP23.2■■□□□ 1.3
LIMS4-202ENST00000480598 FBXO31Q5XUX0 539 aaPredicted RBP23.2■■□□□ 1.3
LIMS4-202ENST00000480598 FBXO41Q8TF61 875 aa23.2■■□□□ 1.3
LIMS4-202ENST00000480598 DUOX2Q9NRD8 1548 aa23.19■■□□□ 1.3
LIMS4-202ENST00000480598 PZPP20742 1482 aa23.19■■□□□ 1.3
LIMS4-202ENST00000480598 KIF15Q9NS87 1388 aa23.18■■□□□ 1.3
LIMS4-202ENST00000480598 PTPRTO14522 1441 aa23.17■■□□□ 1.3
LIMS4-202ENST00000480598 MROH1Q8NDA8 1641 aa23.17■■□□□ 1.3
LIMS4-202ENST00000480598 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
LIMS4-202ENST00000480598 ABCC3O15438 1527 aa23.16■■□□□ 1.3
LIMS4-202ENST00000480598 TNRQ92752 1358 aa23.15■■□□□ 1.3
LIMS4-202ENST00000480598 CERKQ8TCT0 537 aa23.14■■□□□ 1.29
LIMS4-202ENST00000480598 NCKAP5LQ9HCH0 1330 aa23.13■■□□□ 1.29
LIMS4-202ENST00000480598 A2ML1A8K2U0 1454 aa23.13■■□□□ 1.29
LIMS4-202ENST00000480598 CHIC2Q9UKJ5 165 aa23.13■■□□□ 1.29
LIMS4-202ENST00000480598 ZC3H13Q5T200 1668 aaKnown RBP23.13■■□□□ 1.29
LIMS4-202ENST00000480598 CEP152O94986 1710 aa23.11■■□□□ 1.29
LIMS4-202ENST00000480598 ERBINQ96RT1 1412 aa23.11■■□□□ 1.29
LIMS4-202ENST00000480598 PLA2R1Q13018 1463 aa23.11■■□□□ 1.29
LIMS4-202ENST00000480598 FAM50AQ14320 339 aaKnown RBP23.1■■□□□ 1.29
LIMS4-202ENST00000480598 ANKRD30AQ9BXX3 1397 aa23.08■■□□□ 1.29
LIMS4-202ENST00000480598 PRDM15P57071 1507 aaPredicted RBP23.07■■□□□ 1.28
LIMS4-202ENST00000480598 PKD2Q13563 968 aa23.06■■□□□ 1.28
LIMS4-202ENST00000480598 SPATA31D1Q6ZQQ2 1576 aa23.05■■□□□ 1.28
LIMS4-202ENST00000480598 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.04■■□□□ 1.28
LIMS4-202ENST00000480598 ERVK-7P63135 1459 aa23.04■■□□□ 1.28
LIMS4-202ENST00000480598 NLRP1Q9C000 1473 aa23.04■■□□□ 1.28
LIMS4-202ENST00000480598 PPARGC1BQ86YN6 1023 aaKnown RBP23.03■■□□□ 1.28
LIMS4-202ENST00000480598 DEPDC5O75140 1603 aa23.03■■□□□ 1.28
LIMS4-202ENST00000480598 ADGRL2O95490 1459 aa23.03■■□□□ 1.28
LIMS4-202ENST00000480598 CFAP65Q6ZU64 1925 aaKnown RBP23.02■■□□□ 1.28
LIMS4-202ENST00000480598 LTBP4Q8N2S1 1624 aa23.02■■□□□ 1.28
LIMS4-202ENST00000480598 UGGT1Q9NYU2 1555 aa23■■□□□ 1.27
LIMS4-202ENST00000480598 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.99■■□□□ 1.27
LIMS4-202ENST00000480598 POLR1AO95602 1720 aaPredicted RBP22.98■■□□□ 1.27
LIMS4-202ENST00000480598 ZNF335Q9H4Z2 1342 aaPredicted RBP22.97■■□□□ 1.27
LIMS4-202ENST00000480598 KANK1Q14678 1352 aa22.97■■□□□ 1.27
LIMS4-202ENST00000480598 NEURL4Q96JN8 1562 aa22.97■■□□□ 1.27
LIMS4-202ENST00000480598 THEMISQ8N1K5 641 aaPredicted RBP22.96■■□□□ 1.27
LIMS4-202ENST00000480598 ARHGAP31Q2M1Z3 1444 aa22.96■■□□□ 1.27
LIMS4-202ENST00000480598 VWDEQ8N2E2 1590 aa22.94■■□□□ 1.26
LIMS4-202ENST00000480598 ANKRD50Q9ULJ7 1429 aa22.93■■□□□ 1.26
LIMS4-202ENST00000480598 ANKLE2Q86XL3 938 aa22.92■■□□□ 1.26
LIMS4-202ENST00000480598 LMTK2Q8IWU2 1503 aa22.92■■□□□ 1.26
LIMS4-202ENST00000480598 UBR1Q8IWV7 1749 aa22.89■■□□□ 1.26
LIMS4-202ENST00000480598 ITGAEP38570 1179 aa22.87■■□□□ 1.25
LIMS4-202ENST00000480598 EFCAB6Q5THR3 1501 aa22.87■■□□□ 1.25
LIMS4-202ENST00000480598 IQSEC2Q5JU85 1478 aa22.86■■□□□ 1.25
LIMS4-202ENST00000480598 NPHP4O75161 1426 aaPredicted RBP22.86■■□□□ 1.25
LIMS4-202ENST00000480598 MED14O60244 1454 aa22.85■■□□□ 1.25
LIMS4-202ENST00000480598 PIK3C2BO00750 1634 aa22.84■■□□□ 1.25
LIMS4-202ENST00000480598 ROCK1Q13464 1354 aa22.84■■□□□ 1.25
LIMS4-202ENST00000480598 IQGAP1P46940 1657 aa22.83■■□□□ 1.24
LIMS4-202ENST00000480598 SYNMO15061 1565 aa22.82■■□□□ 1.24
LIMS4-202ENST00000480598 UNC13BO14795 1591 aa22.81■■□□□ 1.24
LIMS4-202ENST00000480598 NOS1P29475 1434 aa22.81■■□□□ 1.24
LIMS4-202ENST00000480598 ARHGAP23Q9P227 1491 aa22.79■■□□□ 1.24
LIMS4-202ENST00000480598 SCAF11Q99590 1463 aaKnown RBP22.79■■□□□ 1.24
LIMS4-202ENST00000480598 SLIT1O75093 1534 aa22.78■■□□□ 1.24
LIMS4-202ENST00000480598 TET3O43151 1660 aa22.78■■□□□ 1.24
LIMS4-202ENST00000480598 LTKP29376 864 aa22.78■■□□□ 1.24
LIMS4-202ENST00000480598 IDI1Q13907 227 aa22.78■■□□□ 1.24
LIMS4-202ENST00000480598 STAG3Q9UJ98 1225 aa22.77■■□□□ 1.24
LIMS4-202ENST00000480598 TXNDC2Q86VQ3 553 aa22.76■■□□□ 1.23
LIMS4-202ENST00000480598 CPS1P31327 1500 aa22.76■■□□□ 1.23
LIMS4-202ENST00000480598 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
LIMS4-202ENST00000480598 RPRD2Q5VT52 1461 aaKnown RBP22.75■■□□□ 1.23
LIMS4-202ENST00000480598 GCC2Q8IWJ2 1684 aa22.74■■□□□ 1.23
LIMS4-202ENST00000480598 TMEM2Q9UHN6 1383 aa22.74■■□□□ 1.23
LIMS4-202ENST00000480598 UBAP1LF5GYI3 381 aa22.73■■□□□ 1.23
LIMS4-202ENST00000480598 KDM5AP29375 1690 aaKnown RBP22.73■■□□□ 1.23
LIMS4-202ENST00000480598 ADGRB3O60242 1522 aa22.72■■□□□ 1.23
LIMS4-202ENST00000480598 IQGAP3Q86VI3 1631 aa22.71■■□□□ 1.23
LIMS4-202ENST00000480598 EID1Q9Y6B2 187 aa22.71■■□□□ 1.23
LIMS4-202ENST00000480598 STRCP1A6NGW2 1772 aa22.71■■□□□ 1.23
LIMS4-202ENST00000480598 SLC52A1Q9NWF4 448 aa22.7■■□□□ 1.22
LIMS4-202ENST00000480598 E9PCH4 1651 aa22.7■■□□□ 1.22
LIMS4-202ENST00000480598 NUP155O75694 1391 aa22.69■■□□□ 1.22
LIMS4-202ENST00000480598 MYO5BQ9ULV0 1848 aa22.64■■□□□ 1.22
LIMS4-202ENST00000480598 LRRC7Q96NW7 1537 aa22.62■■□□□ 1.21
LIMS4-202ENST00000480598 TMEM131LA2VDJ0 1609 aa22.61■■□□□ 1.21
LIMS4-202ENST00000480598 NAIPQ13075 1403 aa22.6■■□□□ 1.21
LIMS4-202ENST00000480598 CHGAP10645 457 aaKnown RBP22.59■■□□□ 1.21
LIMS4-202ENST00000480598 SCAF1Q9H7N4 1312 aaKnown RBP22.58■■□□□ 1.21
LIMS4-202ENST00000480598 ZFYVE9O95405 1425 aa22.58■■□□□ 1.21
LIMS4-202ENST00000480598 TOM1O60784 492 aa22.58■■□□□ 1.21
LIMS4-202ENST00000480598 PIP4K2BP78356 416 aa22.58■■□□□ 1.21
LIMS4-202ENST00000480598 SENP3Q9H4L4 574 aaPredicted RBP22.58■■□□□ 1.21
LIMS4-202ENST00000480598 SLC26A8Q96RN1 970 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms