RNA–Protein interactions for RNA: ENST00000480127.1

COL17A1-205, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 3

Gene COL17A1, Length 420 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-205ENST00000480127 CPS1P31327 1500 aa11.37□□□□□ -0.59
COL17A1-205ENST00000480127 PIP4K2BP78356 416 aa11.37□□□□□ -0.59
COL17A1-205ENST00000480127 TNRQ92752 1358 aa11.37□□□□□ -0.59
COL17A1-205ENST00000480127 SHANK2Q9UPX8 1470 aa11.37□□□□□ -0.59
COL17A1-205ENST00000480127 MED1Q15648 1581 aaPredicted RBP11.37□□□□□ -0.59
COL17A1-205ENST00000480127 KIF3BO15066 747 aa11.36□□□□□ -0.59
COL17A1-205ENST00000480127 TOM1O60784 492 aa11.36□□□□□ -0.59
COL17A1-205ENST00000480127 PZPP20742 1482 aa11.36□□□□□ -0.59
COL17A1-205ENST00000480127 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
COL17A1-205ENST00000480127 POLR1AO95602 1720 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-205ENST00000480127 KDM5DQ9BY66 1539 aa11.35□□□□□ -0.59
COL17A1-205ENST00000480127 CEP162Q5TB80 1403 aa11.35□□□□□ -0.59
COL17A1-205ENST00000480127 VWDEQ8N2E2 1590 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL17A1-205ENST00000480127 ANKLE2Q86XL3 938 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 ALKQ9UM73 1620 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 EHBP1L1Q8N3D4 1523 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 FAM135AQ9P2D6 1515 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 MIA2Q96PC5 1412 aa11.34□□□□□ -0.59
COL17A1-205ENST00000480127 WASHC2CQ9Y4E1 1318 aa11.33□□□□□ -0.6
COL17A1-205ENST00000480127 MED14O60244 1454 aa11.32□□□□□ -0.6
COL17A1-205ENST00000480127 CCDC141Q6ZP82 1450 aa11.32□□□□□ -0.6
COL17A1-205ENST00000480127 THEMISQ8N1K5 641 aaPredicted RBP11.32□□□□□ -0.6
COL17A1-205ENST00000480127 NPHP4O75161 1426 aaPredicted RBP11.32□□□□□ -0.6
COL17A1-205ENST00000480127 NLRP1Q9C000 1473 aa11.32□□□□□ -0.6
COL17A1-205ENST00000480127 UGGT1Q9NYU2 1555 aa11.31□□□□□ -0.6
COL17A1-205ENST00000480127 CAMSAP2Q08AD1 1489 aa11.31□□□□□ -0.6
COL17A1-205ENST00000480127 DEPDC5O75140 1603 aa11.31□□□□□ -0.6
COL17A1-205ENST00000480127 RSPH4AQ5TD94 716 aa11.3□□□□□ -0.6
COL17A1-205ENST00000480127 NCOA2Q15596 1464 aa11.29□□□□□ -0.6
COL17A1-205ENST00000480127 STRCP1A6NGW2 1772 aa11.27□□□□□ -0.61
COL17A1-205ENST00000480127 LRRC7Q96NW7 1537 aa11.27□□□□□ -0.61
COL17A1-205ENST00000480127 ARHGEF5Q12774 1597 aa11.27□□□□□ -0.61
COL17A1-205ENST00000480127 IQGAP1P46940 1657 aa11.27□□□□□ -0.61
COL17A1-205ENST00000480127 PHF23Q9BUL5 403 aaPredicted RBP11.26□□□□□ -0.61
COL17A1-205ENST00000480127 ABCC3O15438 1527 aa11.25□□□□□ -0.61
COL17A1-205ENST00000480127 TSPY4P0CV99 314 aa11.25□□□□□ -0.61
COL17A1-205ENST00000480127 TSPY10P0CW01 314 aa11.25□□□□□ -0.61
COL17A1-205ENST00000480127 RNF17Q9BXT8 1623 aaKnown RBP11.24□□□□□ -0.61
COL17A1-205ENST00000480127 ERVK-7P63135 1459 aa11.24□□□□□ -0.61
COL17A1-205ENST00000480127 SENP3Q9H4L4 574 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-205ENST00000480127 SYNMO15061 1565 aa11.22□□□□□ -0.61
COL17A1-205ENST00000480127 ZC3H13Q5T200 1668 aaKnown RBP11.22□□□□□ -0.61
COL17A1-205ENST00000480127 MROH1Q8NDA8 1641 aa11.22□□□□□ -0.61
COL17A1-205ENST00000480127 MAST1Q9Y2H9 1570 aa11.22□□□□□ -0.61
COL17A1-205ENST00000480127 LTKP29376 864 aa11.21□□□□□ -0.61
COL17A1-205ENST00000480127 RGS17Q9UGC6 210 aaPredicted RBP11.21□□□□□ -0.61
COL17A1-205ENST00000480127 EIF2AK4Q9P2K8 1649 aaKnown RBP11.2□□□□□ -0.62
COL17A1-205ENST00000480127 SCAF11Q99590 1463 aaKnown RBP11.2□□□□□ -0.62
COL17A1-205ENST00000480127 UBR1Q8IWV7 1749 aa11.2□□□□□ -0.62
COL17A1-205ENST00000480127 ARHGAP23Q9P227 1491 aa11.19□□□□□ -0.62
COL17A1-205ENST00000480127 SLIT1O75093 1534 aa11.19□□□□□ -0.62
COL17A1-205ENST00000480127 TXNDC2Q86VQ3 553 aa11.18□□□□□ -0.62
COL17A1-205ENST00000480127 LRRC9Q6ZRR7 1453 aa11.18□□□□□ -0.62
COL17A1-205ENST00000480127 CEP152O94986 1710 aa11.18□□□□□ -0.62
COL17A1-205ENST00000480127 APLP2Q06481 763 aa11.17□□□□□ -0.62
COL17A1-205ENST00000480127 ARHGAP31Q2M1Z3 1444 aa11.17□□□□□ -0.62
COL17A1-205ENST00000480127 XIRP1Q702N8 1843 aaKnown RBP11.16□□□□□ -0.62
COL17A1-205ENST00000480127 DUOX2Q9NRD8 1548 aa11.15□□□□□ -0.62
COL17A1-205ENST00000480127 KANK4Q5T7N3 995 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-205ENST00000480127 FAM135BQ49AJ0 1406 aa11.15□□□□□ -0.62
COL17A1-205ENST00000480127 PRDM15P57071 1507 aaPredicted RBP11.14□□□□□ -0.63
COL17A1-205ENST00000480127 MYOM3Q5VTT5 1437 aa11.14□□□□□ -0.63
COL17A1-205ENST00000480127 TMEM2Q9UHN6 1383 aa11.14□□□□□ -0.63
COL17A1-205ENST00000480127 CFAP65Q6ZU64 1925 aaKnown RBP11.13□□□□□ -0.63
COL17A1-205ENST00000480127 VPS8Q8N3P4 1428 aa11.13□□□□□ -0.63
COL17A1-205ENST00000480127 EID1Q9Y6B2 187 aa11.13□□□□□ -0.63
COL17A1-205ENST00000480127 PIK3C2BO00750 1634 aa11.13□□□□□ -0.63
COL17A1-205ENST00000480127 LOC105371045A0A1W2PR82 267 aa11.12□□□□□ -0.63
COL17A1-205ENST00000480127 POTEAQ6S8J7 498 aa11.12□□□□□ -0.63
COL17A1-205ENST00000480127 TMEM94Q12767 1356 aa11.12□□□□□ -0.63
COL17A1-205ENST00000480127 KIF15Q9NS87 1388 aa11.12□□□□□ -0.63
COL17A1-205ENST00000480127 ABCC5O15440 1437 aa11.11□□□□□ -0.63
COL17A1-205ENST00000480127 ERBINQ96RT1 1412 aa11.11□□□□□ -0.63
COL17A1-205ENST00000480127 MAP3K1Q13233 1512 aa11.11□□□□□ -0.63
COL17A1-205ENST00000480127 KCNA6P17658 529 aa11.11□□□□□ -0.63
COL17A1-205ENST00000480127 RRP7BPQ9NSQ0 103 aa11.11□□□□□ -0.63
COL17A1-205ENST00000480127 IDI1Q13907 227 aa11.1□□□□□ -0.63
COL17A1-205ENST00000480127 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.1□□□□□ -0.63
COL17A1-205ENST00000480127 TET3O43151 1660 aa11.1□□□□□ -0.63
COL17A1-205ENST00000480127 RBM33Q96EV2 1170 aaKnown RBP11.09□□□□□ -0.63
COL17A1-205ENST00000480127 EFCAB6Q5THR3 1501 aa11.09□□□□□ -0.63
COL17A1-205ENST00000480127 KDM5AP29375 1690 aaKnown RBP11.08□□□□□ -0.64
COL17A1-205ENST00000480127 ROBO1Q9Y6N7 1651 aa11.08□□□□□ -0.64
COL17A1-205ENST00000480127 PROSER2Q86WR7 435 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-205ENST00000480127 SLC26A8Q96RN1 970 aa11.08□□□□□ -0.64
COL17A1-205ENST00000480127 STAG3Q9UJ98 1225 aa11.08□□□□□ -0.64
COL17A1-205ENST00000480127 LMTK2Q8IWU2 1503 aa11.08□□□□□ -0.64
COL17A1-205ENST00000480127 CROCC2H7BZ55 1655 aa11.07□□□□□ -0.64
COL17A1-205ENST00000480127 KANK1Q14678 1352 aa11.06□□□□□ -0.64
COL17A1-205ENST00000480127 NOS1P29475 1434 aa11.06□□□□□ -0.64
COL17A1-205ENST00000480127 DAPK1P53355 1430 aa11.06□□□□□ -0.64
COL17A1-205ENST00000480127 NWD1Q149M9 1564 aa11.06□□□□□ -0.64
COL17A1-205ENST00000480127 PTPN23Q9H3S7 1636 aa11.06□□□□□ -0.64
COL17A1-205ENST00000480127 NKTRP30414 1462 aaKnown RBP11.05□□□□□ -0.64
COL17A1-205ENST00000480127 ADGRB3O60242 1522 aa11.04□□□□□ -0.64
COL17A1-205ENST00000480127 SLAIN2Q9P270 581 aa11.03□□□□□ -0.64
COL17A1-205ENST00000480127 MSH6P52701 1360 aa11.03□□□□□ -0.64
COL17A1-205ENST00000480127 SLC52A1Q9NWF4 448 aa11.02□□□□□ -0.65
COL17A1-205ENST00000480127 CHIC2Q9UKJ5 165 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms