RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 BCORL1Q5H9F3 1711 aa18.11■□□□□ 0.49
SEC13-216ENST00000479868 CCDC144AA2RUR9 1427 aa18.11■□□□□ 0.49
SEC13-216ENST00000479868 AFAP1Q8N556 730 aa18.11■□□□□ 0.49
SEC13-216ENST00000479868 DCAF11Q8TEB1 546 aa18.11■□□□□ 0.49
SEC13-216ENST00000479868 ABCA9Q8IUA7 1624 aa18.11■□□□□ 0.49
SEC13-216ENST00000479868 ZFYVE16Q7Z3T8 1539 aa18.1■□□□□ 0.49
SEC13-216ENST00000479868 OSCARQ8IYS5 282 aa18.1■□□□□ 0.49
SEC13-216ENST00000479868 SPAG9O60271 1321 aaKnown RBP18.09■□□□□ 0.49
SEC13-216ENST00000479868 ASXL2Q76L83 1435 aa18.09■□□□□ 0.49
SEC13-216ENST00000479868 FANCAO15360 1455 aa18.09■□□□□ 0.49
SEC13-216ENST00000479868 RTEL1-TNFRSF6BF6WH68 1400 aa18.07■□□□□ 0.48
SEC13-216ENST00000479868 CARD11Q9BXL7 1154 aa18.06■□□□□ 0.48
SEC13-216ENST00000479868 PRKRIP1Q9H875 184 aaPredicted RBP18.04■□□□□ 0.48
SEC13-216ENST00000479868 RGL3Q3MIN7 710 aa18.04■□□□□ 0.48
SEC13-216ENST00000479868 ATP10AO60312 1499 aa18.03■□□□□ 0.48
SEC13-216ENST00000479868 INO80Q9ULG1 1556 aaPredicted RBP18.03■□□□□ 0.48
SEC13-216ENST00000479868 ADGRL1O94910 1474 aa18.02■□□□□ 0.48
SEC13-216ENST00000479868 A2MP01023 1474 aa18.02■□□□□ 0.48
SEC13-216ENST00000479868 PRAG1Q86YV5 1406 aa18.02■□□□□ 0.48
SEC13-216ENST00000479868 SUPT16HQ9Y5B9 1047 aaKnown RBP18.02■□□□□ 0.48
SEC13-216ENST00000479868 ATP7AQ04656 1500 aa18.02■□□□□ 0.48
SEC13-216ENST00000479868 TRPM1Q7Z4N2 1603 aa18.02■□□□□ 0.47
SEC13-216ENST00000479868 CCDC184Q52MB2 194 aa18.01■□□□□ 0.47
SEC13-216ENST00000479868 SCAPERQ9BY12 1400 aa18.01■□□□□ 0.47
SEC13-216ENST00000479868 E9PCH4 1651 aa18■□□□□ 0.47
SEC13-216ENST00000479868 ROCK2O75116 1388 aaKnown RBP18■□□□□ 0.47
SEC13-216ENST00000479868 DEPDC5O75140 1603 aa17.99■□□□□ 0.47
SEC13-216ENST00000479868 ST20-MTHFSA0A0A6YYL1 179 aa17.99■□□□□ 0.47
SEC13-216ENST00000479868 POLR3GLQ9BT43 218 aa17.99■□□□□ 0.47
SEC13-216ENST00000479868 ARID4BQ4LE39 1312 aaPredicted RBP17.98■□□□□ 0.47
SEC13-216ENST00000479868 DHX29Q7Z478 1369 aaKnown RBP17.98■□□□□ 0.47
SEC13-216ENST00000479868 NPM1P06748 294 aaKnown RBP eCLIP17.96■□□□□ 0.47
SEC13-216ENST00000479868 NBPF1Q3BBV0 1214 aa17.95■□□□□ 0.46
SEC13-216ENST00000479868 HNRNPUQ00839 825 aaKnown RBP eCLIP17.94■□□□□ 0.46
SEC13-216ENST00000479868 MYT1LQ9UL68 1186 aa17.94■□□□□ 0.46
SEC13-216ENST00000479868 KIDINS220Q9ULH0 1771 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 SPHKAPQ2M3C7 1700 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 TET3O43151 1660 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 VWDEQ8N2E2 1590 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 GPRASP1Q5JY77 1395 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 MRS2Q9HD23 443 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 TRPM2O94759 1503 aa17.92■□□□□ 0.46
SEC13-216ENST00000479868 KIF3BO15066 747 aa17.91■□□□□ 0.46
SEC13-216ENST00000479868 EIF2AK4Q9P2K8 1649 aaKnown RBP17.91■□□□□ 0.46
SEC13-216ENST00000479868 MROH1Q8NDA8 1641 aa17.9■□□□□ 0.46
SEC13-216ENST00000479868 LAMC1P11047 1609 aa17.9■□□□□ 0.46
SEC13-216ENST00000479868 PTPRTO14522 1441 aa17.9■□□□□ 0.46
SEC13-216ENST00000479868 CD109Q6YHK3 1445 aa17.89■□□□□ 0.45
SEC13-216ENST00000479868 PRDM15P57071 1507 aaPredicted RBP17.89■□□□□ 0.45
SEC13-216ENST00000479868 ZNF518AQ6AHZ1 1483 aa17.89■□□□□ 0.45
SEC13-216ENST00000479868 CEP152O94986 1710 aa17.89■□□□□ 0.45
SEC13-216ENST00000479868 KANK1Q14678 1352 aa17.89■□□□□ 0.45
SEC13-216ENST00000479868 CNGB1Q14028 1251 aaPredicted RBP17.88■□□□□ 0.45
SEC13-216ENST00000479868 CLTCL1P53675 1640 aa17.88■□□□□ 0.45
SEC13-216ENST00000479868 FAM9BQ8IZU0 186 aa17.88■□□□□ 0.45
SEC13-216ENST00000479868 CFAP74Q9C0B2 1584 aa17.86■□□□□ 0.45
SEC13-216ENST00000479868 RNF17Q9BXT8 1623 aaKnown RBP17.85■□□□□ 0.45
SEC13-216ENST00000479868 FKBP8Q14318 412 aa17.84■□□□□ 0.45
SEC13-216ENST00000479868 MADDQ8WXG6 1647 aa17.84■□□□□ 0.45
SEC13-216ENST00000479868 POGZQ7Z3K3 1410 aa17.84■□□□□ 0.45
SEC13-216ENST00000479868 TESK2Q96S53 571 aa17.82■□□□□ 0.44
SEC13-216ENST00000479868 COL17A1Q9UMD9 1497 aaPredicted RBP17.81■□□□□ 0.44
SEC13-216ENST00000479868 EFCAB6Q5THR3 1501 aa17.8■□□□□ 0.44
SEC13-216ENST00000479868 PPRC1Q5VV67 1664 aaKnown RBP17.8■□□□□ 0.44
SEC13-216ENST00000479868 UGGT1Q9NYU2 1555 aa17.8■□□□□ 0.44
SEC13-216ENST00000479868 DISP3Q9P2K9 1392 aa17.8■□□□□ 0.44
SEC13-216ENST00000479868 MLH3Q9UHC1 1453 aa17.79■□□□□ 0.44
SEC13-216ENST00000479868 FRMPD1Q5SYB0 1578 aa17.79■□□□□ 0.44
SEC13-216ENST00000479868 HECW2Q9P2P5 1572 aa17.79■□□□□ 0.44
SEC13-216ENST00000479868 BCANQ96GW7 911 aa17.79■□□□□ 0.44
SEC13-216ENST00000479868 NEFLP07196 543 aa17.77■□□□□ 0.44
SEC13-216ENST00000479868 LMTK2Q8IWU2 1503 aa17.76■□□□□ 0.43
SEC13-216ENST00000479868 IQGAP1P46940 1657 aa17.76■□□□□ 0.43
SEC13-216ENST00000479868 ABCA6Q8N139 1617 aa17.76■□□□□ 0.43
SEC13-216ENST00000479868 ZBED9Q6R2W3 1325 aa17.76■□□□□ 0.43
SEC13-216ENST00000479868 NEURL4Q96JN8 1562 aa17.75■□□□□ 0.43
SEC13-216ENST00000479868 STAC3Q96MF2 364 aa17.75■□□□□ 0.43
SEC13-216ENST00000479868 NEO1Q92859 1461 aa17.75■□□□□ 0.43
SEC13-216ENST00000479868 KIF1BO60333 1816 aa17.74■□□□□ 0.43
SEC13-216ENST00000479868 RAPGEF3O95398 923 aa17.73■□□□□ 0.43
SEC13-216ENST00000479868 KTN1Q86UP2 1357 aaKnown RBP17.72■□□□□ 0.43
SEC13-216ENST00000479868 TMF1P82094 1093 aa17.72■□□□□ 0.43
SEC13-216ENST00000479868 PER1O15534 1290 aaPredicted RBP17.72■□□□□ 0.43
SEC13-216ENST00000479868 RALBP1Q15311 655 aa17.72■□□□□ 0.43
SEC13-216ENST00000479868 MROH2AA6NES4 1674 aa17.71■□□□□ 0.43
SEC13-216ENST00000479868 CFAP65Q6ZU64 1925 aaKnown RBP17.71■□□□□ 0.43
SEC13-216ENST00000479868 GGT6Q6P531 493 aa17.71■□□□□ 0.43
SEC13-216ENST00000479868 MYBBP1AQ9BQG0 1328 aaKnown RBP17.71■□□□□ 0.43
SEC13-216ENST00000479868 CYB5RLQ6IPT4 315 aa17.71■□□□□ 0.42
SEC13-216ENST00000479868 TMC1Q8TDI8 760 aa17.71■□□□□ 0.42
SEC13-216ENST00000479868 PNISRQ8TF01 805 aaKnown RBP17.71■□□□□ 0.42
SEC13-216ENST00000479868 MAP3K4Q9Y6R4 1608 aa17.7■□□□□ 0.42
SEC13-216ENST00000479868 SCAF11Q99590 1463 aaKnown RBP17.7■□□□□ 0.42
SEC13-216ENST00000479868 NPATQ14207 1427 aa17.7■□□□□ 0.42
SEC13-216ENST00000479868 IFT172Q9UG01 1749 aa17.69■□□□□ 0.42
SEC13-216ENST00000479868 KIAA1210Q9ULL0 1709 aa17.69■□□□□ 0.42
SEC13-216ENST00000479868 PARD3Q8TEW0 1356 aa17.68■□□□□ 0.42
SEC13-216ENST00000479868 MYOM2P54296 1465 aa17.68■□□□□ 0.42
SEC13-216ENST00000479868 RICTORQ6R327 1708 aa17.68■□□□□ 0.42
SEC13-216ENST00000479868 BRD4O60885 1362 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms