RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 FBLN2P98095 1184 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 HSP90B2PQ58FF3 399 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 SEPT7Q16181 437 aaKnown RBP6.62□□□□□ -1.35
USF3-202ENST00000478658 ZWINTO95229 277 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 CENPQQ7L2Z9 268 aaPredicted RBP6.62□□□□□ -1.35
USF3-202ENST00000478658 OPA1O60313 960 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 MIER1Q8N108 512 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 SEPT10Q9P0V9 454 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 FAM193AP78312 1265 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 HOMER2Q9NSB8 354 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 HOOK3Q86VS8 718 aa6.62□□□□□ -1.35
USF3-202ENST00000478658 EPS15P42566 896 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 MEX3CQ5U5Q3 659 aaKnown RBP6.61□□□□□ -1.35
USF3-202ENST00000478658 HSP90AB4PQ58FF6 505 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 GORABQ5T7V8 394 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 LMOD2Q6P5Q4 547 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 SYNE3Q6ZMZ3 975 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 DHX37Q8IY37 1157 aaKnown RBP6.61□□□□□ -1.35
USF3-202ENST00000478658 EIF3AQ14152 1382 aaKnown RBP6.61□□□□□ -1.35
USF3-202ENST00000478658 KNSTRNQ9Y448 316 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 SLU7O95391 586 aaKnown RBP6.61□□□□□ -1.35
USF3-202ENST00000478658 SSFA2P28290 1259 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 HSP90AB2PQ58FF8 381 aa6.61□□□□□ -1.35
USF3-202ENST00000478658 PLEKHD1A6NEE1 506 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 HOMER1Q86YM7 354 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 RSF1Q96T23 1441 aaPredicted RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 GOLGA6L19H0YKK7 550 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 PIP4K2AP48426 406 aaPredicted RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 LRRC45Q96CN5 670 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 TCERG1O14776 1098 aaKnown RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 SPAG9O60271 1321 aaKnown RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 GOLGA6L10A6NI86 522 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 IQCEQ6IPM2 695 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 CCDC97Q96F63 343 aaPredicted RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 MFAP1P55081 439 aaKnown RBP6.6□□□□□ -1.35
USF3-202ENST00000478658 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.6□□□□□ -1.35
USF3-202ENST00000478658 TAF7LQ5H9L4 462 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 ZBTB7CA1YPR0 619 aa6.6□□□□□ -1.35
USF3-202ENST00000478658 BCCIPQ9P287 314 aaKnown RBP eCLIP6.6□□□□□ -1.35
USF3-202ENST00000478658 CEP112Q8N8E3 955 aa6.59□□□□□ -1.35
USF3-202ENST00000478658 SLC26A8Q96RN1 970 aa6.59□□□□□ -1.35
USF3-202ENST00000478658 NOC2LQ9Y3T9 749 aaKnown RBP6.59□□□□□ -1.35
USF3-202ENST00000478658 WASHC2CQ9Y4E1 1318 aa6.59□□□□□ -1.35
USF3-202ENST00000478658 GOLGA6L10A0A0M3HER8 536 aa6.59□□□□□ -1.35
USF3-202ENST00000478658 SYCP1Q15431 976 aa6.59□□□□□ -1.35
USF3-202ENST00000478658 PABPN1LA6NDY0 278 aaKnown RBP6.58□□□□□ -1.36
USF3-202ENST00000478658 NOP2P46087 812 aaKnown RBP6.58□□□□□ -1.36
USF3-202ENST00000478658 CLASRPQ8N2M8 674 aaKnown RBP6.58□□□□□ -1.36
USF3-202ENST00000478658 PRPF31Q8WWY3 499 aaKnown RBP6.58□□□□□ -1.36
USF3-202ENST00000478658 HNRNPUQ00839 825 aaKnown RBP eCLIP6.58□□□□□ -1.36
USF3-202ENST00000478658 NBR1Q14596 966 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 DDX12PQ92771 950 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 BRMS1Q9HCU9 246 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 SHTN1A0MZ66 631 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 TRIM29Q14134 588 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 CREBRFQ8IUR6 639 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 CCDC66A2RUB6 948 aa6.58□□□□□ -1.36
USF3-202ENST00000478658 DZIP1LQ8IYY4 767 aaKnown RBP6.57□□□□□ -1.36
USF3-202ENST00000478658 SRPK2P78362 688 aaKnown RBP6.57□□□□□ -1.36
USF3-202ENST00000478658 ERLIN1O75477 346 aa6.57□□□□□ -1.36
USF3-202ENST00000478658 CCAR1Q8IX12 1150 aaKnown RBP6.57□□□□□ -1.36
USF3-202ENST00000478658 CEP162Q5TB80 1403 aa6.57□□□□□ -1.36
USF3-202ENST00000478658 CCDC96Q2M329 555 aa6.57□□□□□ -1.36
USF3-202ENST00000478658 GOLGA6L9A6NEM1 432 aa6.57□□□□□ -1.36
USF3-202ENST00000478658 NASPP49321 788 aaPredicted RBP6.57□□□□□ -1.36
USF3-202ENST00000478658 CAVIN1Q6NZI2 390 aaKnown RBP6.57□□□□□ -1.36
USF3-202ENST00000478658 H0YHG0 523 aa6.56□□□□□ -1.36
USF3-202ENST00000478658 SF3A1Q15459 793 aaKnown RBP6.56□□□□□ -1.36
USF3-202ENST00000478658 SREK1Q8WXA9 508 aaKnown RBP6.56□□□□□ -1.36
USF3-202ENST00000478658 NAT10Q9H0A0 1025 aaKnown RBP6.56□□□□□ -1.36
USF3-202ENST00000478658 KIF7Q2M1P5 1343 aa6.56□□□□□ -1.36
USF3-202ENST00000478658 NCAPGQ9BPX3 1015 aa6.56□□□□□ -1.36
USF3-202ENST00000478658 TSPYL1Q9H0U9 437 aa6.56□□□□□ -1.36
USF3-202ENST00000478658 XBP1P17861 261 aa6.56□□□□□ -1.36
USF3-202ENST00000478658 LMOD3Q0VAK6 560 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 CCDC6Q16204 474 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 FERMT1Q9BQL6 677 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 SKOR2Q2VWA4 1001 aaPredicted RBP6.55□□□□□ -1.36
USF3-202ENST00000478658 PMFBP1Q8TBY8 1022 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 POTEJP0CG39 1038 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 TXLNAP40222 546 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 NEBLO76041 1014 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 CETN2P41208 172 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 ST18O60284 1047 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 SETSIPP0DME0 302 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 TAF3Q5VWG9 929 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 CCDC180Q9P1Z9 1646 aa6.55□□□□□ -1.36
USF3-202ENST00000478658 PATL2C9JE40 543 aaKnown RBP6.54□□□□□ -1.36
USF3-202ENST00000478658 ZNF777Q9ULD5 760 aaPredicted RBP6.54□□□□□ -1.36
USF3-202ENST00000478658 CLIP1P30622 1438 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 CEP63Q96MT8 703 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 ATP6V1E1P36543 226 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 MRS2Q9HD23 443 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 KIAA0754O94854 1291 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 SSX2IPQ9Y2D8 614 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 GOLGA1Q92805 767 aa6.54□□□□□ -1.36
USF3-202ENST00000478658 SMARCE1Q969G3 411 aa6.53□□□□□ -1.36
USF3-202ENST00000478658 PCMTD1Q96MG8 357 aaPredicted RBP6.53□□□□□ -1.36
USF3-202ENST00000478658 NUCKS1Q9H1E3 243 aaKnown RBP6.53□□□□□ -1.36
USF3-202ENST00000478658 USH1CQ9Y6N9 552 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms