RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 RNF17Q9BXT8 1623 aaKnown RBP10.53□□□□□ -0.72
BRCA1-215ENST00000478531 ADGRL2O95490 1459 aa10.52□□□□□ -0.72
BRCA1-215ENST00000478531 PTPRKQ15262 1439 aa10.52□□□□□ -0.72
BRCA1-215ENST00000478531 MROH2AA6NES4 1674 aa10.52□□□□□ -0.73
BRCA1-215ENST00000478531 NCOA1Q15788 1441 aa10.51□□□□□ -0.73
BRCA1-215ENST00000478531 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.51□□□□□ -0.73
BRCA1-215ENST00000478531 CEP152O94986 1710 aa10.51□□□□□ -0.73
BRCA1-215ENST00000478531 ERBINQ96RT1 1412 aa10.51□□□□□ -0.73
BRCA1-215ENST00000478531 MROH1Q8NDA8 1641 aa10.5□□□□□ -0.73
BRCA1-215ENST00000478531 KDM5DQ9BY66 1539 aa10.49□□□□□ -0.73
BRCA1-215ENST00000478531 CNTLNQ9NXG0 1405 aa10.49□□□□□ -0.73
BRCA1-215ENST00000478531 ZC3H13Q5T200 1668 aaKnown RBP10.49□□□□□ -0.73
BRCA1-215ENST00000478531 DEPDC5O75140 1603 aa10.49□□□□□ -0.73
BRCA1-215ENST00000478531 CEBPAP49715 358 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-215ENST00000478531 PRDM15P57071 1507 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-215ENST00000478531 ROCK1Q13464 1354 aa10.47□□□□□ -0.73
BRCA1-215ENST00000478531 GCC2Q8IWJ2 1684 aa10.47□□□□□ -0.73
BRCA1-215ENST00000478531 ANKRD50Q9ULJ7 1429 aa10.47□□□□□ -0.73
BRCA1-215ENST00000478531 CFAP65Q6ZU64 1925 aaKnown RBP10.46□□□□□ -0.73
BRCA1-215ENST00000478531 PREX1Q8TCU6 1659 aa10.46□□□□□ -0.73
BRCA1-215ENST00000478531 WASHC2CQ9Y4E1 1318 aa10.46□□□□□ -0.73
BRCA1-215ENST00000478531 ABCC3O15438 1527 aa10.46□□□□□ -0.73
BRCA1-215ENST00000478531 FAM135AQ9P2D6 1515 aa10.46□□□□□ -0.73
BRCA1-215ENST00000478531 CAMSAP1Q5T5Y3 1602 aa10.46□□□□□ -0.74
BRCA1-215ENST00000478531 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.46□□□□□ -0.741e-6■■■□□ 18.6
BRCA1-215ENST00000478531 ZMYM3Q14202 1370 aa10.45□□□□□ -0.74
BRCA1-215ENST00000478531 SETD1BQ9UPS6 1966 aaKnown RBP10.44□□□□□ -0.74
BRCA1-215ENST00000478531 PPP6R1Q9UPN7 881 aa10.44□□□□□ -0.74
BRCA1-215ENST00000478531 UNC13BO14795 1591 aa10.43□□□□□ -0.74
BRCA1-215ENST00000478531 KANK1Q14678 1352 aa10.43□□□□□ -0.74
BRCA1-215ENST00000478531 MYO3AQ8NEV4 1616 aa10.42□□□□□ -0.74
BRCA1-215ENST00000478531 LMTK3Q96Q04 1460 aa10.42□□□□□ -0.74
BRCA1-215ENST00000478531 PZPP20742 1482 aa10.41□□□□□ -0.74
BRCA1-215ENST00000478531 VWDEQ8N2E2 1590 aa10.41□□□□□ -0.74
BRCA1-215ENST00000478531 NAIPQ13075 1403 aa10.4□□□□□ -0.74
BRCA1-215ENST00000478531 NPATQ14207 1427 aa10.4□□□□□ -0.74
BRCA1-215ENST00000478531 UHRF1BP1Q6BDS2 1440 aa10.4□□□□□ -0.74
BRCA1-215ENST00000478531 HFM1A2PYH4 1435 aa10.4□□□□□ -0.75
BRCA1-215ENST00000478531 IQGAP3Q86VI3 1631 aa10.39□□□□□ -0.75
BRCA1-215ENST00000478531 TET3O43151 1660 aa10.39□□□□□ -0.75
BRCA1-215ENST00000478531 EFCAB6Q5THR3 1501 aa10.39□□□□□ -0.75
BRCA1-215ENST00000478531 ZNF142P52746 1687 aaPredicted RBP10.39□□□□□ -0.75
BRCA1-215ENST00000478531 FBXO31Q5XUX0 539 aaPredicted RBP10.39□□□□□ -0.75
BRCA1-215ENST00000478531 LMTK2Q8IWU2 1503 aa10.38□□□□□ -0.75
BRCA1-215ENST00000478531 ERVK-7P63135 1459 aa10.37□□□□□ -0.75
BRCA1-215ENST00000478531 CEP170BQ9Y4F5 1589 aaPredicted RBP10.37□□□□□ -0.75
BRCA1-215ENST00000478531 SPATA31D1Q6ZQQ2 1576 aa10.37□□□□□ -0.75
BRCA1-215ENST00000478531 TNRQ92752 1358 aa10.37□□□□□ -0.75
BRCA1-215ENST00000478531 HSPA2P54652 639 aa10.37□□□□□ -0.75
BRCA1-215ENST00000478531 E9PCH4 1651 aa10.36□□□□□ -0.75
BRCA1-215ENST00000478531 NUP155O75694 1391 aa10.36□□□□□ -0.75
BRCA1-215ENST00000478531 ADRA2BP18089 450 aa10.36□□□□□ -0.75
BRCA1-215ENST00000478531 ARHGAP31Q2M1Z3 1444 aa10.35□□□□□ -0.75
BRCA1-215ENST00000478531 SYNMO15061 1565 aa10.34□□□□□ -0.75
BRCA1-215ENST00000478531 A2ML1A8K2U0 1454 aa10.33□□□□□ -0.76
BRCA1-215ENST00000478531 TRIM52Q96A61 297 aa10.33□□□□□ -0.76
BRCA1-215ENST00000478531 RPRD2Q5VT52 1461 aaKnown RBP10.32□□□□□ -0.76
BRCA1-215ENST00000478531 NLRP1Q9C000 1473 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 SPHKAPQ2M3C7 1700 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 PIK3C2BO00750 1634 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 STRCQ7RTU9 1775 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 UBR1Q8IWV7 1749 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 UGGT1Q9NYU2 1555 aa10.32□□□□□ -0.76
BRCA1-215ENST00000478531 SETD5Q9C0A6 1442 aa10.31□□□□□ -0.76
BRCA1-215ENST00000478531 MYO5BQ9ULV0 1848 aa10.31□□□□□ -0.76
BRCA1-215ENST00000478531 POLR1AO95602 1720 aaPredicted RBP10.3□□□□□ -0.76
BRCA1-215ENST00000478531 NOS1P29475 1434 aa10.29□□□□□ -0.76
BRCA1-215ENST00000478531 RAB3GAP2Q9H2M9 1393 aa10.29□□□□□ -0.76
BRCA1-215ENST00000478531 ADGRB3O60242 1522 aa10.27□□□□□ -0.77
BRCA1-215ENST00000478531 SLC4A1APQ9BWU0 796 aaKnown RBP10.27□□□□□ -0.77
BRCA1-215ENST00000478531 KDM5AP29375 1690 aaKnown RBP10.27□□□□□ -0.77
BRCA1-215ENST00000478531 STAG3Q9UJ98 1225 aa10.26□□□□□ -0.77
BRCA1-215ENST00000478531 PLA2R1Q13018 1463 aa10.26□□□□□ -0.77
BRCA1-215ENST00000478531 PKD2Q13563 968 aa10.26□□□□□ -0.77
BRCA1-215ENST00000478531 CLTCL1P53675 1640 aa10.25□□□□□ -0.77
BRCA1-215ENST00000478531 IDI1Q13907 227 aa10.25□□□□□ -0.77
BRCA1-215ENST00000478531 NCKAP5LQ9HCH0 1330 aa10.25□□□□□ -0.77
BRCA1-215ENST00000478531 TRPM2O94759 1503 aa10.25□□□□□ -0.77
BRCA1-215ENST00000478531 THEMISQ8N1K5 641 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-215ENST00000478531 NEURL4Q96JN8 1562 aa10.24□□□□□ -0.77
BRCA1-215ENST00000478531 KIF1BO60333 1816 aa10.24□□□□□ -0.77
BRCA1-215ENST00000478531 TMEM131LA2VDJ0 1609 aa10.24□□□□□ -0.77
BRCA1-215ENST00000478531 CHGAP10645 457 aaKnown RBP10.24□□□□□ -0.77
BRCA1-215ENST00000478531 SLC52A1Q9NWF4 448 aa10.23□□□□□ -0.77
BRCA1-215ENST00000478531 IQGAP1P46940 1657 aa10.23□□□□□ -0.77
BRCA1-215ENST00000478531 MPHOSPH9Q99550 1183 aa10.23□□□□□ -0.77
BRCA1-215ENST00000478531 PTPRTO14522 1441 aa10.22□□□□□ -0.77
BRCA1-215ENST00000478531 SLIT1O75093 1534 aa10.22□□□□□ -0.77
BRCA1-215ENST00000478531 TRIM26Q12899 539 aaPredicted RBP10.21□□□□□ -0.77
BRCA1-215ENST00000478531 ANKLE2Q86XL3 938 aa10.21□□□□□ -0.77
BRCA1-215ENST00000478531 SCAF11Q99590 1463 aaKnown RBP10.21□□□□□ -0.77
BRCA1-215ENST00000478531 ARHGAP23Q9P227 1491 aa10.21□□□□□ -0.78
BRCA1-215ENST00000478531 DMRT2Q9Y5R5 561 aa10.21□□□□□ -0.78
BRCA1-215ENST00000478531 TMEM2Q9UHN6 1383 aa10.2□□□□□ -0.78
BRCA1-215ENST00000478531 ACIN1Q9UKV3 1341 aaKnown RBP10.2□□□□□ -0.78
BRCA1-215ENST00000478531 NPHP4O75161 1426 aaPredicted RBP10.19□□□□□ -0.78
BRCA1-215ENST00000478531 EID1Q9Y6B2 187 aa10.19□□□□□ -0.78
BRCA1-215ENST00000478531 LTKP29376 864 aa10.18□□□□□ -0.78
BRCA1-215ENST00000478531 TXNDC2Q86VQ3 553 aa10.18□□□□□ -0.78
BRCA1-215ENST00000478531 CCDC144AA2RUR9 1427 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms