RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 RNF17Q9BXT8 1623 aaKnown RBP33.83■■■■□ 3.01
COL9A3-211ENST00000477612 DAPK1P53355 1430 aa33.83■■■■□ 3.01
COL9A3-211ENST00000477612 KDM5DQ9BY66 1539 aa33.82■■■■□ 3
COL9A3-211ENST00000477612 STRCQ7RTU9 1775 aa33.81■■■■□ 3
COL9A3-211ENST00000477612 DUOX2Q9NRD8 1548 aa33.81■■■■□ 3
COL9A3-211ENST00000477612 WASHC2CQ9Y4E1 1318 aa33.74■■■□□ 2.99
COL9A3-211ENST00000477612 ZNF142P52746 1687 aaPredicted RBP33.74■■■□□ 2.99
COL9A3-211ENST00000477612 MYO3AQ8NEV4 1616 aa33.73■■■□□ 2.99
COL9A3-211ENST00000477612 ZC3H13Q5T200 1668 aaKnown RBP33.73■■■□□ 2.99
COL9A3-211ENST00000477612 KIF15Q9NS87 1388 aa33.72■■■□□ 2.99
COL9A3-211ENST00000477612 MROH1Q8NDA8 1641 aa33.72■■■□□ 2.99
COL9A3-211ENST00000477612 PZPP20742 1482 aa33.71■■■□□ 2.99
COL9A3-211ENST00000477612 ERBINQ96RT1 1412 aa33.7■■■□□ 2.98
COL9A3-211ENST00000477612 RRP7BPQ9NSQ0 103 aa33.66■■■□□ 2.98
COL9A3-211ENST00000477612 DMRT2Q9Y5R5 561 aa33.66■■■□□ 2.98
COL9A3-211ENST00000477612 CEP170BQ9Y4F5 1589 aaPredicted RBP33.65■■■□□ 2.98
COL9A3-211ENST00000477612 ABCC3O15438 1527 aa33.65■■■□□ 2.98
COL9A3-211ENST00000477612 NCOA1Q15788 1441 aa33.65■■■□□ 2.98
COL9A3-211ENST00000477612 ANKRD30AQ9BXX3 1397 aa33.65■■■□□ 2.98
COL9A3-211ENST00000477612 ADGRL2O95490 1459 aa33.64■■■□□ 2.98
COL9A3-211ENST00000477612 DEPDC5O75140 1603 aa33.62■■■□□ 2.97
COL9A3-211ENST00000477612 CAMSAP1Q5T5Y3 1602 aa33.62■■■□□ 2.97
COL9A3-211ENST00000477612 FBXO31Q5XUX0 539 aaPredicted RBP33.61■■■□□ 2.97
COL9A3-211ENST00000477612 PRDM15P57071 1507 aaPredicted RBP33.61■■■□□ 2.97
COL9A3-211ENST00000477612 CEP152O94986 1710 aa33.61■■■□□ 2.97
COL9A3-211ENST00000477612 FAM50AQ14320 339 aaKnown RBP33.6■■■□□ 2.97
COL9A3-211ENST00000477612 CHIC2Q9UKJ5 165 aa33.6■■■□□ 2.97
COL9A3-211ENST00000477612 PTPRTO14522 1441 aa33.6■■■□□ 2.97
COL9A3-211ENST00000477612 A2ML1A8K2U0 1454 aa33.59■■■□□ 2.97
COL9A3-211ENST00000477612 ILDR1Q86SU0 546 aaPredicted RBP33.59■■■□□ 2.97
COL9A3-211ENST00000477612 TNRQ92752 1358 aa33.58■■■□□ 2.97
COL9A3-211ENST00000477612 PLA2R1Q13018 1463 aa33.56■■■□□ 2.96
COL9A3-211ENST00000477612 SPATA31D1Q6ZQQ2 1576 aa33.53■■■□□ 2.96
COL9A3-211ENST00000477612 CFAP65Q6ZU64 1925 aaKnown RBP33.51■■■□□ 2.95
COL9A3-211ENST00000477612 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.5■■■□□ 2.955e-6■□□□□ 8.7
COL9A3-211ENST00000477612 ARHGAP31Q2M1Z3 1444 aa33.5■■■□□ 2.95
COL9A3-211ENST00000477612 NLRP1Q9C000 1473 aa33.5■■■□□ 2.95
COL9A3-211ENST00000477612 VWDEQ8N2E2 1590 aa33.47■■■□□ 2.95
COL9A3-211ENST00000477612 ERVK-7P63135 1459 aa33.46■■■□□ 2.95
COL9A3-211ENST00000477612 PKD2Q13563 968 aa33.46■■■□□ 2.95
COL9A3-211ENST00000477612 LMTK2Q8IWU2 1503 aa33.44■■■□□ 2.94
COL9A3-211ENST00000477612 PPARGC1BQ86YN6 1023 aaKnown RBP33.44■■■□□ 2.94
COL9A3-211ENST00000477612 FBXO41Q8TF61 875 aa33.44■■■□□ 2.94
COL9A3-211ENST00000477612 KANK1Q14678 1352 aa33.43■■■□□ 2.94
COL9A3-211ENST00000477612 NCKAP5LQ9HCH0 1330 aa33.42■■■□□ 2.94
COL9A3-211ENST00000477612 ANKRD50Q9ULJ7 1429 aa33.42■■■□□ 2.94
COL9A3-211ENST00000477612 ROCK1Q13464 1354 aa33.41■■■□□ 2.94
COL9A3-211ENST00000477612 CERKQ8TCT0 537 aa33.4■■■□□ 2.94
COL9A3-211ENST00000477612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.4■■■□□ 2.941e-8■□□□□ 9.2
COL9A3-211ENST00000477612 UGGT1Q9NYU2 1555 aa33.39■■■□□ 2.94
COL9A3-211ENST00000477612 POLR1AO95602 1720 aaPredicted RBP33.38■■■□□ 2.93
COL9A3-211ENST00000477612 THEMISQ8N1K5 641 aaPredicted RBP33.36■■■□□ 2.93
COL9A3-211ENST00000477612 LTBP4Q8N2S1 1624 aa33.33■■■□□ 2.93
COL9A3-211ENST00000477612 RRBP1Q9P2E9 1410 aaKnown RBP33.33■■■□□ 2.93
COL9A3-211ENST00000477612 UBR1Q8IWV7 1749 aa33.3■■■□□ 2.92
COL9A3-211ENST00000477612 NEURL4Q96JN8 1562 aa33.3■■■□□ 2.92
COL9A3-211ENST00000477612 EFCAB6Q5THR3 1501 aa33.29■■■□□ 2.92
COL9A3-211ENST00000477612 UNC13BO14795 1591 aa33.29■■■□□ 2.92
COL9A3-211ENST00000477612 ANKLE2Q86XL3 938 aa33.25■■■□□ 2.91
COL9A3-211ENST00000477612 MED14O60244 1454 aa33.24■■■□□ 2.91
COL9A3-211ENST00000477612 TET3O43151 1660 aa33.23■■■□□ 2.91
COL9A3-211ENST00000477612 NOS1P29475 1434 aa33.22■■■□□ 2.91
COL9A3-211ENST00000477612 KDM5AP29375 1690 aaKnown RBP33.21■■■□□ 2.91
COL9A3-211ENST00000477612 RPRD2Q5VT52 1461 aaKnown RBP33.21■■■□□ 2.91
COL9A3-211ENST00000477612 GCC2Q8IWJ2 1684 aa33.2■■■□□ 2.91
COL9A3-211ENST00000477612 ITGAEP38570 1179 aa33.2■■■□□ 2.91
COL9A3-211ENST00000477612 SYNMO15061 1565 aa33.19■■■□□ 2.9
COL9A3-211ENST00000477612 PIK3C2BO00750 1634 aa33.19■■■□□ 2.9
COL9A3-211ENST00000477612 IQSEC2Q5JU85 1478 aa33.18■■■□□ 2.9
COL9A3-211ENST00000477612 ZNF335Q9H4Z2 1342 aaPredicted RBP33.16■■■□□ 2.9
COL9A3-211ENST00000477612 SLIT1O75093 1534 aa33.16■■■□□ 2.9
COL9A3-211ENST00000477612 IQGAP3Q86VI3 1631 aa33.16■■■□□ 2.9
COL9A3-211ENST00000477612 ARHGAP23Q9P227 1491 aa33.15■■■□□ 2.9
COL9A3-211ENST00000477612 NPHP4O75161 1426 aaPredicted RBP33.13■■■□□ 2.89
COL9A3-211ENST00000477612 IQGAP1P46940 1657 aa33.13■■■□□ 2.89
COL9A3-211ENST00000477612 IDI1Q13907 227 aa33.12■■■□□ 2.89
COL9A3-211ENST00000477612 SLC52A1Q9NWF4 448 aa33.09■■■□□ 2.89
COL9A3-211ENST00000477612 E9PCH4 1651 aa33.09■■■□□ 2.89
COL9A3-211ENST00000477612 SCAF11Q99590 1463 aaKnown RBP33.06■■■□□ 2.88
COL9A3-211ENST00000477612 NUP155O75694 1391 aa33.04■■■□□ 2.88
COL9A3-211ENST00000477612 TMEM2Q9UHN6 1383 aa33.04■■■□□ 2.88
COL9A3-211ENST00000477612 LTKP29376 864 aa33.03■■■□□ 2.88
COL9A3-211ENST00000477612 NAIPQ13075 1403 aa33.02■■■□□ 2.88
COL9A3-211ENST00000477612 ADGRB3O60242 1522 aa33.02■■■□□ 2.88
COL9A3-211ENST00000477612 TXNDC2Q86VQ3 553 aa33.01■■■□□ 2.87
COL9A3-211ENST00000477612 STAG3Q9UJ98 1225 aa33.01■■■□□ 2.87
COL9A3-211ENST00000477612 CPS1P31327 1500 aa33.01■■■□□ 2.87
COL9A3-211ENST00000477612 EID1Q9Y6B2 187 aa32.97■■■□□ 2.87
COL9A3-211ENST00000477612 MYO5BQ9ULV0 1848 aa32.97■■■□□ 2.87
COL9A3-211ENST00000477612 HFM1A2PYH4 1435 aa32.94■■■□□ 2.86
COL9A3-211ENST00000477612 TMEM131LA2VDJ0 1609 aa32.94■■■□□ 2.86
COL9A3-211ENST00000477612 STRCP1A6NGW2 1772 aa32.93■■■□□ 2.86
COL9A3-211ENST00000477612 SPHKAPQ2M3C7 1700 aa32.87■■■□□ 2.85
COL9A3-211ENST00000477612 ZFYVE9O95405 1425 aa32.85■■■□□ 2.85
COL9A3-211ENST00000477612 HDGFP51858 240 aaKnown RBP32.79■■■□□ 2.84
COL9A3-211ENST00000477612 LRRC7Q96NW7 1537 aa32.78■■■□□ 2.84
COL9A3-211ENST00000477612 UBAP1LF5GYI3 381 aa32.78■■■□□ 2.84
COL9A3-211ENST00000477612 RIMS2Q9UQ26 1411 aa32.77■■■□□ 2.84
COL9A3-211ENST00000477612 PLEKHG1Q9ULL1 1385 aa32.74■■■□□ 2.83
COL9A3-211ENST00000477612 CHGAP10645 457 aaKnown RBP32.72■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms