RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 PLCD3Q8N3E9 789 aa9.78□□□□□ -0.84
LDB3-206ENST00000477489 PTPRKQ15262 1439 aa9.78□□□□□ -0.84
LDB3-206ENST00000477489 ADGRL2O95490 1459 aa9.78□□□□□ -0.84
LDB3-206ENST00000477489 ARAP3Q8WWN8 1544 aa9.77□□□□□ -0.84
LDB3-206ENST00000477489 RSPH4AQ5TD94 716 aa9.77□□□□□ -0.85
LDB3-206ENST00000477489 PHF12Q96QT6 1004 aa9.77□□□□□ -0.85
LDB3-206ENST00000477489 PLEKHH2Q8IVE3 1493 aa9.77□□□□□ -0.85
LDB3-206ENST00000477489 MAPKBP1O60336 1514 aa9.77□□□□□ -0.85
LDB3-206ENST00000477489 ABCC5O15440 1437 aa9.76□□□□□ -0.85
LDB3-206ENST00000477489 ZCCHC11Q5TAX3 1644 aaKnown RBP9.76□□□□□ -0.85
LDB3-206ENST00000477489 ITGAEP38570 1179 aa9.76□□□□□ -0.85
LDB3-206ENST00000477489 CFDP1Q9UEE9 299 aaPredicted RBP9.76□□□□□ -0.85
LDB3-206ENST00000477489 MYO5CQ9NQX4 1742 aa9.76□□□□□ -0.85
LDB3-206ENST00000477489 POTEIP0CG38 1075 aa9.75□□□□□ -0.85
LDB3-206ENST00000477489 MAST1Q9Y2H9 1570 aa9.73□□□□□ -0.85
LDB3-206ENST00000477489 GALR2O43603 387 aaPredicted RBP9.73□□□□□ -0.85
LDB3-206ENST00000477489 TSPYL2Q9H2G4 693 aaPredicted RBP9.73□□□□□ -0.85
LDB3-206ENST00000477489 FBXO3Q9UK99 471 aa9.73□□□□□ -0.85
LDB3-206ENST00000477489 CDC42BPBQ9Y5S2 1711 aa9.73□□□□□ -0.85
LDB3-206ENST00000477489 KIAA1107Q9UPP5 1409 aa9.73□□□□□ -0.85
LDB3-206ENST00000477489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.72□□□□□ -0.85
LDB3-206ENST00000477489 ARID3CA6NKF2 412 aa9.71□□□□□ -0.86
LDB3-206ENST00000477489 SOCS7O14512 581 aa9.71□□□□□ -0.86
LDB3-206ENST00000477489 DCBLD2Q96PD2 775 aa9.71□□□□□ -0.86
LDB3-206ENST00000477489 ANKRD30AQ9BXX3 1397 aa9.71□□□□□ -0.86
LDB3-206ENST00000477489 ZBTB47Q9UFB7 747 aaPredicted RBP9.7□□□□□ -0.86
LDB3-206ENST00000477489 NCOA1Q15788 1441 aa9.7□□□□□ -0.86
LDB3-206ENST00000477489 CCDC141Q6ZP82 1450 aa9.7□□□□□ -0.86
LDB3-206ENST00000477489 TTC37Q6PGP7 1564 aa9.7□□□□□ -0.86
LDB3-206ENST00000477489 SAMD9LQ8IVG5 1584 aa9.7□□□□□ -0.86
LDB3-206ENST00000477489 PLCH2O75038 1416 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 ILDR2Q71H61 639 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 RASEFQ8IZ41 740 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 MBD5Q9P267 1494 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 WDR7Q9Y4E6 1490 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 CCDC61Q9Y6R9 512 aa9.69□□□□□ -0.86
LDB3-206ENST00000477489 PPRC1Q5VV67 1664 aaKnown RBP9.67□□□□□ -0.86
LDB3-206ENST00000477489 ABCA9Q8IUA7 1624 aa9.67□□□□□ -0.86
LDB3-206ENST00000477489 PLXNC1O60486 1568 aa9.67□□□□□ -0.86
LDB3-206ENST00000477489 ARHGAP5Q13017 1502 aa9.67□□□□□ -0.86
LDB3-206ENST00000477489 KDM5DQ9BY66 1539 aa9.67□□□□□ -0.86
LDB3-206ENST00000477489 C9orf84Q5VXU9 1444 aa9.67□□□□□ -0.86
LDB3-206ENST00000477489 TSPY4P0CV99 314 aa9.66□□□□□ -0.86
LDB3-206ENST00000477489 TSPY10P0CW01 314 aa9.66□□□□□ -0.86
LDB3-206ENST00000477489 ZNF316A6NFI3 1004 aaPredicted RBP9.65□□□□□ -0.86
LDB3-206ENST00000477489 MS4A3Q96HJ5 214 aa9.65□□□□□ -0.86
LDB3-206ENST00000477489 ABCC1P33527 1531 aa9.65□□□□□ -0.86
LDB3-206ENST00000477489 ZNF644Q9H582 1327 aaPredicted RBP9.64□□□□□ -0.87
LDB3-206ENST00000477489 CFAP74Q9C0B2 1584 aa9.64□□□□□ -0.87
LDB3-206ENST00000477489 NUBP1P53384 320 aa9.64□□□□□ -0.87
LDB3-206ENST00000477489 EFCAB2Q5VUJ9 269 aa9.64□□□□□ -0.87
LDB3-206ENST00000477489 ANKRD50Q9ULJ7 1429 aa9.64□□□□□ -0.87
LDB3-206ENST00000477489 RRP7BPQ9NSQ0 103 aa9.63□□□□□ -0.87
LDB3-206ENST00000477489 RTEL1-TNFRSF6BF6WH68 1400 aa9.63□□□□□ -0.87
LDB3-206ENST00000477489 SYCP2Q9BX26 1530 aa9.62□□□□□ -0.87
LDB3-206ENST00000477489 KIF12Q96FN5 646 aa9.62□□□□□ -0.87
LDB3-206ENST00000477489 DISP3Q9P2K9 1392 aa9.62□□□□□ -0.87
LDB3-206ENST00000477489 VASPP50552 380 aaPredicted RBP9.61□□□□□ -0.87
LDB3-206ENST00000477489 CHIC2Q9UKJ5 165 aa9.61□□□□□ -0.87
LDB3-206ENST00000477489 ZNF777Q9ULD5 760 aaPredicted RBP9.61□□□□□ -0.87
LDB3-206ENST00000477489 DUOX2Q9NRD8 1548 aa9.61□□□□□ -0.87
LDB3-206ENST00000477489 COL17A1Q9UMD9 1497 aaPredicted RBP9.6□□□□□ -0.87
LDB3-206ENST00000477489 UNC13BO14795 1591 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 ASXL2Q76L83 1435 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 ERBINQ96RT1 1412 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 LHX8Q68G74 356 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 MPHOSPH9Q99550 1183 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 TONSLQ96HA7 1378 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 KIF15Q9NS87 1388 aa9.6□□□□□ -0.87
LDB3-206ENST00000477489 DENND4BO75064 1496 aaPredicted RBP9.59□□□□□ -0.87
LDB3-206ENST00000477489 PZPP20742 1482 aa9.59□□□□□ -0.87
LDB3-206ENST00000477489 TRIM52Q96A61 297 aa9.58□□□□□ -0.88
LDB3-206ENST00000477489 ANKRD30BQ9BXX2 1392 aa9.58□□□□□ -0.88
LDB3-206ENST00000477489 RPRD2Q5VT52 1461 aaKnown RBP9.58□□□□□ -0.88
LDB3-206ENST00000477489 MAGI2Q86UL8 1455 aa9.58□□□□□ -0.88
LDB3-206ENST00000477489 PPP1R15AO75807 674 aaPredicted RBP9.57□□□□□ -0.88
LDB3-206ENST00000477489 FAM212AQ96EL1 285 aa9.57□□□□□ -0.88
LDB3-206ENST00000477489 FANCAO15360 1455 aa9.57□□□□□ -0.88
LDB3-206ENST00000477489 GLI2P10070 1586 aa9.57□□□□□ -0.88
LDB3-206ENST00000477489 EIF2AK4Q9P2K8 1649 aaKnown RBP9.56□□□□□ -0.88
LDB3-206ENST00000477489 INO80Q9ULG1 1556 aaPredicted RBP9.56□□□□□ -0.88
LDB3-206ENST00000477489 MAP3K13O43283 966 aa9.56□□□□□ -0.88
LDB3-206ENST00000477489 HNRNPMP52272 730 aaKnown RBP eCLIP9.56□□□□□ -0.88
LDB3-206ENST00000477489 IQGAP3Q86VI3 1631 aa9.56□□□□□ -0.88
LDB3-206ENST00000477489 ZFYVE16Q7Z3T8 1539 aa9.56□□□□□ -0.88
LDB3-206ENST00000477489 ARHGEF12Q9NZN5 1544 aa9.56□□□□□ -0.88
LDB3-206ENST00000477489 DIEXFQ68CQ4 756 aaKnown RBP9.55□□□□□ -0.88
LDB3-206ENST00000477489 ASTLQ6HA08 431 aaPredicted RBP9.55□□□□□ -0.88
LDB3-206ENST00000477489 KCNH8Q96L42 1107 aa9.55□□□□□ -0.88
LDB3-206ENST00000477489 NEO1Q92859 1461 aa9.54□□□□□ -0.88
LDB3-206ENST00000477489 SIN3AQ96ST3 1273 aa9.54□□□□□ -0.88
LDB3-206ENST00000477489 SPATA31D1Q6ZQQ2 1576 aa9.54□□□□□ -0.88
LDB3-206ENST00000477489 FAM135AQ9P2D6 1515 aa9.53□□□□□ -0.88
LDB3-206ENST00000477489 ATMINO43313 823 aaPredicted RBP9.53□□□□□ -0.88
LDB3-206ENST00000477489 PELP1Q8IZL8 1130 aaKnown RBP9.53□□□□□ -0.88
LDB3-206ENST00000477489 ATP10AO60312 1499 aa9.53□□□□□ -0.88
LDB3-206ENST00000477489 ZNF518AQ6AHZ1 1483 aa9.53□□□□□ -0.88
LDB3-206ENST00000477489 DEPDC5O75140 1603 aa9.53□□□□□ -0.88
LDB3-206ENST00000477489 MAP3K4Q9Y6R4 1608 aa9.53□□□□□ -0.88
LDB3-206ENST00000477489 NUP155O75694 1391 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms