RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FGD6Q6ZV73 1430 aa22.15■■□□□ 1.14
UPF3A-204ENST00000475218 APLP2Q06481 763 aa22.15■■□□□ 1.14
UPF3A-204ENST00000475218 FAM135AQ9P2D6 1515 aa22.15■■□□□ 1.14
UPF3A-204ENST00000475218 TCOF1Q13428 1488 aaKnown RBP22.15■■□□□ 1.14
UPF3A-204ENST00000475218 MROH1Q8NDA8 1641 aa22.14■■□□□ 1.13
UPF3A-204ENST00000475218 CAMSAP1Q5T5Y3 1602 aa22.13■■□□□ 1.13
UPF3A-204ENST00000475218 CEP170BQ9Y4F5 1589 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-204ENST00000475218 FBXO41Q8TF61 875 aa22.13■■□□□ 1.13
UPF3A-204ENST00000475218 EIF2AK4Q9P2K8 1649 aaKnown RBP22.12■■□□□ 1.13
UPF3A-204ENST00000475218 SHANK2Q9UPX8 1470 aa22.12■■□□□ 1.13
UPF3A-204ENST00000475218 DNMT1P26358 1616 aaKnown RBP22.12■■□□□ 1.13
UPF3A-204ENST00000475218 PZPP20742 1482 aa22.11■■□□□ 1.13
UPF3A-204ENST00000475218 FBXO31Q5XUX0 539 aaPredicted RBP22.11■■□□□ 1.13
UPF3A-204ENST00000475218 PTPRTO14522 1441 aa22.11■■□□□ 1.13
UPF3A-204ENST00000475218 DAPK1P53355 1430 aa22.1■■□□□ 1.13
UPF3A-204ENST00000475218 WASHC2CQ9Y4E1 1318 aa22.08■■□□□ 1.13
UPF3A-204ENST00000475218 ABCC3O15438 1527 aa22.08■■□□□ 1.13
UPF3A-204ENST00000475218 DUOX2Q9NRD8 1548 aa22.08■■□□□ 1.13
UPF3A-204ENST00000475218 DMRT2Q9Y5R5 561 aa22.07■■□□□ 1.12
UPF3A-204ENST00000475218 CERKQ8TCT0 537 aa22.07■■□□□ 1.12
UPF3A-204ENST00000475218 A2ML1A8K2U0 1454 aa22.05■■□□□ 1.12
UPF3A-204ENST00000475218 KIF15Q9NS87 1388 aa22.05■■□□□ 1.12
UPF3A-204ENST00000475218 PLA2R1Q13018 1463 aa22.05■■□□□ 1.12
UPF3A-204ENST00000475218 ZC3H13Q5T200 1668 aaKnown RBP22.04■■□□□ 1.12
UPF3A-204ENST00000475218 TNRQ92752 1358 aa22.04■■□□□ 1.12
UPF3A-204ENST00000475218 NCKAP5LQ9HCH0 1330 aa22.04■■□□□ 1.12
UPF3A-204ENST00000475218 CEP152O94986 1710 aa22.03■■□□□ 1.12
UPF3A-204ENST00000475218 RRP7BPQ9NSQ0 103 aa22.02■■□□□ 1.12
UPF3A-204ENST00000475218 LTBP4Q8N2S1 1624 aa22.02■■□□□ 1.12
UPF3A-204ENST00000475218 PRDM15P57071 1507 aaPredicted RBP22■■□□□ 1.11
UPF3A-204ENST00000475218 ERBINQ96RT1 1412 aa22■■□□□ 1.11
UPF3A-204ENST00000475218 DEPDC5O75140 1603 aa21.99■■□□□ 1.11
UPF3A-204ENST00000475218 SPATA31D1Q6ZQQ2 1576 aa21.99■■□□□ 1.11
UPF3A-204ENST00000475218 CHIC2Q9UKJ5 165 aa21.97■■□□□ 1.11
UPF3A-204ENST00000475218 ADGRL2O95490 1459 aa21.96■■□□□ 1.11
UPF3A-204ENST00000475218 ERVK-7P63135 1459 aa21.96■■□□□ 1.11
UPF3A-204ENST00000475218 NEURL4Q96JN8 1562 aa21.95■■□□□ 1.1
UPF3A-204ENST00000475218 NLRP1Q9C000 1473 aa21.95■■□□□ 1.1
UPF3A-204ENST00000475218 PKD2Q13563 968 aa21.94■■□□□ 1.1
UPF3A-204ENST00000475218 ANKRD30AQ9BXX3 1397 aa21.93■■□□□ 1.1
UPF3A-204ENST00000475218 POLR1AO95602 1720 aaPredicted RBP21.92■■□□□ 1.1
UPF3A-204ENST00000475218 VWDEQ8N2E2 1590 aa21.92■■□□□ 1.1
UPF3A-204ENST00000475218 CFAP65Q6ZU64 1925 aaKnown RBP21.91■■□□□ 1.1
UPF3A-204ENST00000475218 UGGT1Q9NYU2 1555 aa21.9■■□□□ 1.1
UPF3A-204ENST00000475218 ARHGAP31Q2M1Z3 1444 aa21.9■■□□□ 1.1
UPF3A-204ENST00000475218 FAM50AQ14320 339 aaKnown RBP21.9■■□□□ 1.1
UPF3A-204ENST00000475218 ZNF335Q9H4Z2 1342 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-204ENST00000475218 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.89■■□□□ 1.1
UPF3A-204ENST00000475218 LMTK2Q8IWU2 1503 aa21.87■■□□□ 1.09
UPF3A-204ENST00000475218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.87■■□□□ 1.096e-8■■■□□ 16.7
UPF3A-204ENST00000475218 UBR1Q8IWV7 1749 aa21.85■■□□□ 1.09
UPF3A-204ENST00000475218 PPARGC1BQ86YN6 1023 aaKnown RBP21.84■■□□□ 1.09
UPF3A-204ENST00000475218 THEMISQ8N1K5 641 aaPredicted RBP21.84■■□□□ 1.09
UPF3A-204ENST00000475218 MED14O60244 1454 aa21.83■■□□□ 1.08
UPF3A-204ENST00000475218 IQSEC2Q5JU85 1478 aa21.83■■□□□ 1.08
UPF3A-204ENST00000475218 ANKRD50Q9ULJ7 1429 aa21.81■■□□□ 1.08
UPF3A-204ENST00000475218 EFCAB6Q5THR3 1501 aa21.8■■□□□ 1.08
UPF3A-204ENST00000475218 KANK1Q14678 1352 aa21.79■■□□□ 1.08
UPF3A-204ENST00000475218 ANKLE2Q86XL3 938 aa21.79■■□□□ 1.08
UPF3A-204ENST00000475218 SYNMO15061 1565 aa21.78■■□□□ 1.08
UPF3A-204ENST00000475218 PIK3C2BO00750 1634 aa21.78■■□□□ 1.08
UPF3A-204ENST00000475218 NPHP4O75161 1426 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-204ENST00000475218 ARHGAP23Q9P227 1491 aa21.76■■□□□ 1.07
UPF3A-204ENST00000475218 IQGAP1P46940 1657 aa21.76■■□□□ 1.07
UPF3A-204ENST00000475218 NOS1P29475 1434 aa21.76■■□□□ 1.07
UPF3A-204ENST00000475218 ROCK1Q13464 1354 aa21.75■■□□□ 1.07
UPF3A-204ENST00000475218 UNC13BO14795 1591 aa21.75■■□□□ 1.07
UPF3A-204ENST00000475218 SLIT1O75093 1534 aa21.75■■□□□ 1.07
UPF3A-204ENST00000475218 LTKP29376 864 aa21.71■■□□□ 1.07
UPF3A-204ENST00000475218 STRCP1A6NGW2 1772 aa21.71■■□□□ 1.07
UPF3A-204ENST00000475218 SCAF11Q99590 1463 aaKnown RBP21.71■■□□□ 1.07
UPF3A-204ENST00000475218 TET3O43151 1660 aa21.71■■□□□ 1.07
UPF3A-204ENST00000475218 KDM5AP29375 1690 aaKnown RBP21.7■■□□□ 1.06
UPF3A-204ENST00000475218 IDI1Q13907 227 aa21.7■■□□□ 1.06
UPF3A-204ENST00000475218 CPS1P31327 1500 aa21.69■■□□□ 1.06
UPF3A-204ENST00000475218 RPRD2Q5VT52 1461 aaKnown RBP21.68■■□□□ 1.06
UPF3A-204ENST00000475218 RRBP1Q9P2E9 1410 aaKnown RBP21.67■■□□□ 1.06
UPF3A-204ENST00000475218 ITGAEP38570 1179 aa21.67■■□□□ 1.06
UPF3A-204ENST00000475218 GCC2Q8IWJ2 1684 aa21.67■■□□□ 1.06
UPF3A-204ENST00000475218 TMEM2Q9UHN6 1383 aa21.67■■□□□ 1.06
UPF3A-204ENST00000475218 IQGAP3Q86VI3 1631 aa21.65■■□□□ 1.06
UPF3A-204ENST00000475218 E9PCH4 1651 aa21.65■■□□□ 1.06
UPF3A-204ENST00000475218 ADGRB3O60242 1522 aa21.64■■□□□ 1.06
UPF3A-204ENST00000475218 TXNDC2Q86VQ3 553 aa21.64■■□□□ 1.06
UPF3A-204ENST00000475218 UBAP1LF5GYI3 381 aa21.62■■□□□ 1.05
UPF3A-204ENST00000475218 ALKQ9UM73 1620 aa21.62■■□□□ 1.05
UPF3A-204ENST00000475218 MYO5BQ9ULV0 1848 aa21.6■■□□□ 1.05
UPF3A-204ENST00000475218 SLC52A1Q9NWF4 448 aa21.59■■□□□ 1.05
UPF3A-204ENST00000475218 LRRC7Q96NW7 1537 aa21.59■■□□□ 1.05
UPF3A-204ENST00000475218 TMEM131LA2VDJ0 1609 aa21.58■■□□□ 1.05
UPF3A-204ENST00000475218 STAG3Q9UJ98 1225 aa21.57■■□□□ 1.04
UPF3A-204ENST00000475218 EID1Q9Y6B2 187 aa21.56■■□□□ 1.04
UPF3A-204ENST00000475218 NUP155O75694 1391 aa21.56■■□□□ 1.04
UPF3A-204ENST00000475218 ZFYVE9O95405 1425 aa21.56■■□□□ 1.04
UPF3A-204ENST00000475218 XIRP1Q702N8 1843 aaKnown RBP21.54■■□□□ 1.04
UPF3A-204ENST00000475218 NAIPQ13075 1403 aa21.54■■□□□ 1.04
UPF3A-204ENST00000475218 RIMS2Q9UQ26 1411 aa21.49■■□□□ 1.03
UPF3A-204ENST00000475218 SLC26A8Q96RN1 970 aa21.48■■□□□ 1.03
UPF3A-204ENST00000475218 TOM1O60784 492 aa21.47■■□□□ 1.03
UPF3A-204ENST00000475218 PIP4K2BP78356 416 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms