RNA–Protein interactions for RNA: ENST00000472928.5

HDAC1-205, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-205ENST00000472928 TCOF1Q13428 1488 aaKnown RBP10.25□□□□□ -0.77
HDAC1-205ENST00000472928 ZMYM3Q14202 1370 aa10.25□□□□□ -0.77
HDAC1-205ENST00000472928 CLIP1P30622 1438 aa10.24□□□□□ -0.77
HDAC1-205ENST00000472928 MROH2AA6NES4 1674 aa10.24□□□□□ -0.77
HDAC1-205ENST00000472928 ITSN2Q9NZM3 1697 aa10.24□□□□□ -0.77
HDAC1-205ENST00000472928 MED1Q15648 1581 aaPredicted RBP10.23□□□□□ -0.77
HDAC1-205ENST00000472928 PREX2Q70Z35 1606 aa10.23□□□□□ -0.77
HDAC1-205ENST00000472928 LOC105371045A0A1W2PR82 267 aa10.23□□□□□ -0.77
HDAC1-205ENST00000472928 PTPRKQ15262 1439 aa10.23□□□□□ -0.77
HDAC1-205ENST00000472928 ZNF142P52746 1687 aaPredicted RBP10.22□□□□□ -0.77
HDAC1-205ENST00000472928 LRRIQ1Q96JM4 1722 aa10.22□□□□□ -0.77
HDAC1-205ENST00000472928 HSPA1LP34931 641 aa10.22□□□□□ -0.77
HDAC1-205ENST00000472928 PKD2Q13563 968 aa10.22□□□□□ -0.77
HDAC1-205ENST00000472928 MYO3AQ8NEV4 1616 aa10.22□□□□□ -0.77
HDAC1-205ENST00000472928 SAMD9LQ8IVG5 1584 aa10.21□□□□□ -0.78
HDAC1-205ENST00000472928 CEP170BQ9Y4F5 1589 aaPredicted RBP10.21□□□□□ -0.78
HDAC1-205ENST00000472928 PLXNC1O60486 1568 aa10.19□□□□□ -0.78
HDAC1-205ENST00000472928 IFNLR1Q8IU57 520 aaPredicted RBP10.18□□□□□ -0.78
HDAC1-205ENST00000472928 CLTCQ00610 1675 aaKnown RBP10.18□□□□□ -0.78
HDAC1-205ENST00000472928 CDC42BPAQ5VT25 1732 aa10.17□□□□□ -0.78
HDAC1-205ENST00000472928 SYCP2Q9BX26 1530 aa10.17□□□□□ -0.78
HDAC1-205ENST00000472928 SUPT6HQ7KZ85 1726 aaKnown RBP10.16□□□□□ -0.78
HDAC1-205ENST00000472928 SPAG9O60271 1321 aaKnown RBP10.16□□□□□ -0.78
HDAC1-205ENST00000472928 UBTFP17480 764 aaKnown RBP10.16□□□□□ -0.78
HDAC1-205ENST00000472928 PIP4K2BP78356 416 aa10.16□□□□□ -0.78
HDAC1-205ENST00000472928 A2ML1A8K2U0 1454 aa10.16□□□□□ -0.78
HDAC1-205ENST00000472928 A2MP01023 1474 aa10.16□□□□□ -0.78
HDAC1-205ENST00000472928 ALKQ9UM73 1620 aa10.15□□□□□ -0.78
HDAC1-205ENST00000472928 NEURL4Q96JN8 1562 aa10.15□□□□□ -0.78
HDAC1-205ENST00000472928 CPS1P31327 1500 aa10.15□□□□□ -0.78
HDAC1-205ENST00000472928 ATP7AQ04656 1500 aa10.15□□□□□ -0.78
HDAC1-205ENST00000472928 GPATCH8Q9UKJ3 1502 aaKnown RBP10.15□□□□□ -0.78
HDAC1-205ENST00000472928 CCDC18Q5T9S5 1454 aa10.15□□□□□ -0.78
HDAC1-205ENST00000472928 CASKIN1Q8WXD9 1431 aa10.15□□□□□ -0.79
HDAC1-205ENST00000472928 DNMT1P26358 1616 aaKnown RBP10.15□□□□□ -0.79
HDAC1-205ENST00000472928 INO80Q9ULG1 1556 aaPredicted RBP10.14□□□□□ -0.79
HDAC1-205ENST00000472928 SPDYE2BA6NHP3 402 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 TOM1O60784 492 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 SPDYE6P0CI01 402 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 HNRNPMP52272 730 aaKnown RBP eCLIP10.14□□□□□ -0.79
HDAC1-205ENST00000472928 SPDYE2Q495Y8 402 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 ZNF692Q9BU19 519 aaPredicted RBP10.14□□□□□ -0.79
HDAC1-205ENST00000472928 ZNF777Q9ULD5 760 aaPredicted RBP10.14□□□□□ -0.79
HDAC1-205ENST00000472928 SHANK2Q9UPX8 1470 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 CEP162Q5TB80 1403 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 KIAA1107Q9UPP5 1409 aa10.14□□□□□ -0.79
HDAC1-205ENST00000472928 GGT6Q6P531 493 aa10.13□□□□□ -0.79
HDAC1-205ENST00000472928 SSUH2Q9Y2M2 353 aa10.13□□□□□ -0.79
HDAC1-205ENST00000472928 VWDEQ8N2E2 1590 aa10.12□□□□□ -0.79
HDAC1-205ENST00000472928 TNRQ92752 1358 aa10.1□□□□□ -0.79
HDAC1-205ENST00000472928 POLR1AO95602 1720 aaPredicted RBP10.1□□□□□ -0.79
HDAC1-205ENST00000472928 PLEKHH2Q8IVE3 1493 aa10.1□□□□□ -0.79
HDAC1-205ENST00000472928 FBXO31Q5XUX0 539 aaPredicted RBP10.09□□□□□ -0.79
HDAC1-205ENST00000472928 RGS17Q9UGC6 210 aaPredicted RBP10.08□□□□□ -0.8
HDAC1-205ENST00000472928 FYCO1Q9BQS8 1478 aa10.08□□□□□ -0.8
HDAC1-205ENST00000472928 MED14O60244 1454 aa10.07□□□□□ -0.8
HDAC1-205ENST00000472928 PZPP20742 1482 aa10.07□□□□□ -0.8
HDAC1-205ENST00000472928 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.07□□□□□ -0.8
HDAC1-205ENST00000472928 CFDP1Q9UEE9 299 aaPredicted RBP10.07□□□□□ -0.8
HDAC1-205ENST00000472928 ADGBQ8N7X0 1667 aa10.06□□□□□ -0.8
HDAC1-205ENST00000472928 MBD5Q9P267 1494 aa10.06□□□□□ -0.8
HDAC1-205ENST00000472928 ANKLE2Q86XL3 938 aa10.06□□□□□ -0.8
HDAC1-205ENST00000472928 NPHP4O75161 1426 aaPredicted RBP10.06□□□□□ -0.8
HDAC1-205ENST00000472928 ZNF644Q9H582 1327 aaPredicted RBP10.06□□□□□ -0.8
HDAC1-205ENST00000472928 DHX29Q7Z478 1369 aaKnown RBP10.05□□□□□ -0.8
HDAC1-205ENST00000472928 LRRC7Q96NW7 1537 aa10.05□□□□□ -0.8
HDAC1-205ENST00000472928 CCNB3Q8WWL7 1395 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 STRCP1A6NGW2 1772 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 CACNB1Q02641 598 aaPredicted RBP10.04□□□□□ -0.8
HDAC1-205ENST00000472928 STAG3Q9UJ98 1225 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 RTEL1-TNFRSF6BF6WH68 1400 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 MIA2Q96PC5 1412 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 NLRP1Q9C000 1473 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 DEPDC5O75140 1603 aa10.04□□□□□ -0.8
HDAC1-205ENST00000472928 KDM5DQ9BY66 1539 aa10.03□□□□□ -0.8
HDAC1-205ENST00000472928 FAM135AQ9P2D6 1515 aa10.03□□□□□ -0.8
HDAC1-205ENST00000472928 RNF17Q9BXT8 1623 aaKnown RBP10.03□□□□□ -0.8
HDAC1-205ENST00000472928 KIF3BO15066 747 aa10.02□□□□□ -0.81
HDAC1-205ENST00000472928 THEMISQ8N1K5 641 aaPredicted RBP10.02□□□□□ -0.81
HDAC1-205ENST00000472928 IQGAP1P46940 1657 aa10.02□□□□□ -0.81
HDAC1-205ENST00000472928 UGGT1Q9NYU2 1555 aa10.01□□□□□ -0.81
HDAC1-205ENST00000472928 SYNMO15061 1565 aa10.01□□□□□ -0.81
HDAC1-205ENST00000472928 TIAM1Q13009 1591 aa10.01□□□□□ -0.81
HDAC1-205ENST00000472928 WASHC2CQ9Y4E1 1318 aa10□□□□□ -0.81
HDAC1-205ENST00000472928 POTEAQ6S8J7 498 aa9.98□□□□□ -0.81
HDAC1-205ENST00000472928 SPOCK2Q92563 424 aa9.98□□□□□ -0.81
HDAC1-205ENST00000472928 MTUS2Q5JR59 1369 aa9.98□□□□□ -0.81
HDAC1-205ENST00000472928 VPS8Q8N3P4 1428 aa9.98□□□□□ -0.81
HDAC1-205ENST00000472928 ZC3H13Q5T200 1668 aaKnown RBP9.97□□□□□ -0.81
HDAC1-205ENST00000472928 KLHL34Q8N239 644 aa9.97□□□□□ -0.81
HDAC1-205ENST00000472928 CCDC141Q6ZP82 1450 aa9.97□□□□□ -0.81
HDAC1-205ENST00000472928 ERVK-7P63135 1459 aa9.96□□□□□ -0.82
HDAC1-205ENST00000472928 ABCC3O15438 1527 aa9.96□□□□□ -0.82
HDAC1-205ENST00000472928 PLCD3Q8N3E9 789 aa9.95□□□□□ -0.82
HDAC1-205ENST00000472928 NCOA2Q15596 1464 aa9.95□□□□□ -0.82
HDAC1-205ENST00000472928 XIRP1Q702N8 1843 aaKnown RBP9.95□□□□□ -0.82
HDAC1-205ENST00000472928 EHBP1L1Q8N3D4 1523 aa9.94□□□□□ -0.82
HDAC1-205ENST00000472928 CAMSAP2Q08AD1 1489 aa9.94□□□□□ -0.82
HDAC1-205ENST00000472928 SCAF11Q99590 1463 aaKnown RBP9.94□□□□□ -0.82
HDAC1-205ENST00000472928 FAM135BQ49AJ0 1406 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms