RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 MROH2AA6NES4 1674 aa14.77□□□□□ -0.04
CPSF4-211ENST00000471455 SSUH2Q9Y2M2 353 aa14.77□□□□□ -0.05
CPSF4-211ENST00000471455 GPATCH8Q9UKJ3 1502 aaKnown RBP14.76□□□□□ -0.05
CPSF4-211ENST00000471455 KIAA1107Q9UPP5 1409 aa14.76□□□□□ -0.05
CPSF4-211ENST00000471455 CCNB3Q8WWL7 1395 aa14.75□□□□□ -0.05
CPSF4-211ENST00000471455 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
CPSF4-211ENST00000471455 ATP7AQ04656 1500 aa14.75□□□□□ -0.05
CPSF4-211ENST00000471455 NCOA1Q15788 1441 aa14.75□□□□□ -0.05
CPSF4-211ENST00000471455 IQSEC2Q5JU85 1478 aa14.74□□□□□ -0.05
CPSF4-211ENST00000471455 INO80Q9ULG1 1556 aaPredicted RBP14.73□□□□□ -0.05
CPSF4-211ENST00000471455 MTUS2Q5JR59 1369 aa14.73□□□□□ -0.05
CPSF4-211ENST00000471455 A2MP01023 1474 aa14.72□□□□□ -0.05
CPSF4-211ENST00000471455 PLXNC1O60486 1568 aa14.72□□□□□ -0.05
CPSF4-211ENST00000471455 HNRNPMP52272 730 aaKnown RBP eCLIP14.71□□□□□ -0.05
CPSF4-211ENST00000471455 SUPT6HQ7KZ85 1726 aaKnown RBP14.71□□□□□ -0.05
CPSF4-211ENST00000471455 ZMYM3Q14202 1370 aa14.71□□□□□ -0.06
CPSF4-211ENST00000471455 CAMSAP1Q5T5Y3 1602 aa14.7□□□□□ -0.06
CPSF4-211ENST00000471455 REM2Q8IYK8 340 aaPredicted RBP14.69□□□□□ -0.06
CPSF4-211ENST00000471455 ADGBQ8N7X0 1667 aa14.68□□□□□ -0.06
CPSF4-211ENST00000471455 EHBP1L1Q8N3D4 1523 aa14.68□□□□□ -0.06
CPSF4-211ENST00000471455 DISP3Q9P2K9 1392 aa14.68□□□□□ -0.06
CPSF4-211ENST00000471455 ZNF142P52746 1687 aaPredicted RBP14.68□□□□□ -0.06
CPSF4-211ENST00000471455 CLTCQ00610 1675 aaKnown RBP14.68□□□□□ -0.06
CPSF4-211ENST00000471455 LTBP4Q8N2S1 1624 aa14.67□□□□□ -0.06
CPSF4-211ENST00000471455 MYO3AQ8NEV4 1616 aa14.67□□□□□ -0.06
CPSF4-211ENST00000471455 ZNF692Q9BU19 519 aaPredicted RBP14.67□□□□□ -0.06
CPSF4-211ENST00000471455 PLA2R1Q13018 1463 aa14.67□□□□□ -0.06
CPSF4-211ENST00000471455 PKD2Q13563 968 aa14.66□□□□□ -0.06
CPSF4-211ENST00000471455 CEP170BQ9Y4F5 1589 aaPredicted RBP14.65□□□□□ -0.06
CPSF4-211ENST00000471455 GGT6Q6P531 493 aa14.65□□□□□ -0.06
CPSF4-211ENST00000471455 TIAM1Q13009 1591 aa14.64□□□□□ -0.07
CPSF4-211ENST00000471455 RTEL1-TNFRSF6BF6WH68 1400 aa14.64□□□□□ -0.07
CPSF4-211ENST00000471455 PTPRKQ15262 1439 aa14.64□□□□□ -0.07
CPSF4-211ENST00000471455 CEP162Q5TB80 1403 aa14.63□□□□□ -0.07
CPSF4-211ENST00000471455 SPATA31D1Q6ZQQ2 1576 aa14.63□□□□□ -0.07
CPSF4-211ENST00000471455 FAM135AQ9P2D6 1515 aa14.62□□□□□ -0.07
CPSF4-211ENST00000471455 TCOF1Q13428 1488 aaKnown RBP14.61□□□□□ -0.07
CPSF4-211ENST00000471455 CCDC141Q6ZP82 1450 aa14.6□□□□□ -0.07
CPSF4-211ENST00000471455 MBD5Q9P267 1494 aa14.6□□□□□ -0.07
CPSF4-211ENST00000471455 NCKAP5LQ9HCH0 1330 aa14.6□□□□□ -0.07
CPSF4-211ENST00000471455 DHX29Q7Z478 1369 aaKnown RBP14.6□□□□□ -0.07
CPSF4-211ENST00000471455 A2ML1A8K2U0 1454 aa14.59□□□□□ -0.07
CPSF4-211ENST00000471455 RSPH4AQ5TD94 716 aa14.59□□□□□ -0.07
CPSF4-211ENST00000471455 ZNF335Q9H4Z2 1342 aaPredicted RBP14.58□□□□□ -0.08
CPSF4-211ENST00000471455 KDM5DQ9BY66 1539 aa14.57□□□□□ -0.08
CPSF4-211ENST00000471455 PITPNM1O00562 1244 aa14.57□□□□□ -0.08
CPSF4-211ENST00000471455 ZNF644Q9H582 1327 aaPredicted RBP14.57□□□□□ -0.08
CPSF4-211ENST00000471455 SPDYE4A6NLX3 237 aa14.56□□□□□ -0.08
CPSF4-211ENST00000471455 UBAP1LF5GYI3 381 aa14.56□□□□□ -0.08
CPSF4-211ENST00000471455 SOCS7O14512 581 aa14.56□□□□□ -0.08
CPSF4-211ENST00000471455 CAMSAP2Q08AD1 1489 aa14.56□□□□□ -0.08
CPSF4-211ENST00000471455 CHRDL2Q6WN34 429 aa14.55□□□□□ -0.08
CPSF4-211ENST00000471455 TNRQ92752 1358 aa14.55□□□□□ -0.08
CPSF4-211ENST00000471455 PZPP20742 1482 aa14.55□□□□□ -0.08
CPSF4-211ENST00000471455 NCOA2Q15596 1464 aa14.55□□□□□ -0.08
CPSF4-211ENST00000471455 KIF3BO15066 747 aa14.54□□□□□ -0.08
CPSF4-211ENST00000471455 DNMT1P26358 1616 aaKnown RBP14.54□□□□□ -0.08
CPSF4-211ENST00000471455 POLR1AO95602 1720 aaPredicted RBP14.52□□□□□ -0.08
CPSF4-211ENST00000471455 ARHGEF5Q12774 1597 aa14.52□□□□□ -0.08
CPSF4-211ENST00000471455 CPS1P31327 1500 aa14.52□□□□□ -0.08
CPSF4-211ENST00000471455 WASHC2CQ9Y4E1 1318 aa14.52□□□□□ -0.08
CPSF4-211ENST00000471455 TSPY4P0CV99 314 aa14.52□□□□□ -0.09
CPSF4-211ENST00000471455 TSPY10P0CW01 314 aa14.52□□□□□ -0.09
CPSF4-211ENST00000471455 ILDR2Q71H61 639 aa14.52□□□□□ -0.09
CPSF4-211ENST00000471455 NLRP1Q9C000 1473 aa14.51□□□□□ -0.09
CPSF4-211ENST00000471455 THEMISQ8N1K5 641 aaPredicted RBP14.49□□□□□ -0.09
CPSF4-211ENST00000471455 ANKLE2Q86XL3 938 aa14.48□□□□□ -0.09
CPSF4-211ENST00000471455 ZC3H13Q5T200 1668 aaKnown RBP14.47□□□□□ -0.09
CPSF4-211ENST00000471455 TOM1O60784 492 aa14.47□□□□□ -0.09
CPSF4-211ENST00000471455 MIA2Q96PC5 1412 aa14.47□□□□□ -0.09
CPSF4-211ENST00000471455 NEURL4Q96JN8 1562 aa14.47□□□□□ -0.09
CPSF4-211ENST00000471455 UGGT1Q9NYU2 1555 aa14.47□□□□□ -0.09
CPSF4-211ENST00000471455 SHANK2Q9UPX8 1470 aa14.46□□□□□ -0.09
CPSF4-211ENST00000471455 FBXO31Q5XUX0 539 aaPredicted RBP14.46□□□□□ -0.09
CPSF4-211ENST00000471455 RNF17Q9BXT8 1623 aaKnown RBP14.45□□□□□ -0.1
CPSF4-211ENST00000471455 VPS8Q8N3P4 1428 aa14.45□□□□□ -0.1
CPSF4-211ENST00000471455 MAST1Q9Y2H9 1570 aa14.45□□□□□ -0.1
CPSF4-211ENST00000471455 DEPDC5O75140 1603 aa14.44□□□□□ -0.1
CPSF4-211ENST00000471455 EIF2AK4Q9P2K8 1649 aaKnown RBP14.44□□□□□ -0.1
CPSF4-211ENST00000471455 LRRC9Q6ZRR7 1453 aa14.44□□□□□ -0.1
CPSF4-211ENST00000471455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.44□□□□□ -0.1
CPSF4-211ENST00000471455 NPHP4O75161 1426 aaPredicted RBP14.43□□□□□ -0.1
CPSF4-211ENST00000471455 MED14O60244 1454 aa14.43□□□□□ -0.1
CPSF4-211ENST00000471455 ABCC3O15438 1527 aa14.42□□□□□ -0.1
CPSF4-211ENST00000471455 PROM2Q8N271 834 aa14.42□□□□□ -0.1
CPSF4-211ENST00000471455 MAP3K1Q13233 1512 aa14.41□□□□□ -0.1
CPSF4-211ENST00000471455 SPDYE1Q8NFV5 336 aaPredicted RBP14.41□□□□□ -0.1
CPSF4-211ENST00000471455 IQGAP1P46940 1657 aa14.4□□□□□ -0.1
CPSF4-211ENST00000471455 VWDEQ8N2E2 1590 aa14.4□□□□□ -0.1
CPSF4-211ENST00000471455 PIP4K2BP78356 416 aa14.4□□□□□ -0.1
CPSF4-211ENST00000471455 POTEHQ6S545 545 aa14.4□□□□□ -0.1
CPSF4-211ENST00000471455 ERVK-7P63135 1459 aa14.39□□□□□ -0.11
CPSF4-211ENST00000471455 MYOM3Q5VTT5 1437 aa14.39□□□□□ -0.11
CPSF4-211ENST00000471455 DUOX2Q9NRD8 1548 aa14.38□□□□□ -0.11
CPSF4-211ENST00000471455 HSPA1LP34931 641 aa14.38□□□□□ -0.11
CPSF4-211ENST00000471455 SYNMO15061 1565 aa14.38□□□□□ -0.11
CPSF4-211ENST00000471455 MED1Q15648 1581 aaPredicted RBP14.36□□□□□ -0.11
CPSF4-211ENST00000471455 PIP4P2Q8N4L2 257 aa14.35□□□□□ -0.11
CPSF4-211ENST00000471455 MROH1Q8NDA8 1641 aa14.34□□□□□ -0.11
CPSF4-211ENST00000471455 ERBINQ96RT1 1412 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms