RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 KDM5DQ9BY66 1539 aa14.88□□□□□ -0.03
SF3A1-207ENST00000471342 DHX57Q6P158 1386 aaKnown RBP14.87□□□□□ -0.03
SF3A1-207ENST00000471342 UNC13BO14795 1591 aa14.87□□□□□ -0.03
SF3A1-207ENST00000471342 RNF17Q9BXT8 1623 aaKnown RBP14.86□□□□□ -0.03
SF3A1-207ENST00000471342 EIF2AK4Q9P2K8 1649 aaKnown RBP14.85□□□□□ -0.03
SF3A1-207ENST00000471342 KIF3BO15066 747 aa14.85□□□□□ -0.03
SF3A1-207ENST00000471342 PRDM15P57071 1507 aaPredicted RBP14.85□□□□□ -0.03
SF3A1-207ENST00000471342 PLA2R1Q13018 1463 aa14.82□□□□□ -0.04
SF3A1-207ENST00000471342 LMTK2Q8IWU2 1503 aa14.82□□□□□ -0.04
SF3A1-207ENST00000471342 MPHOSPH9Q99550 1183 aa14.8□□□□□ -0.04
SF3A1-207ENST00000471342 NUP155O75694 1391 aa14.8□□□□□ -0.04
SF3A1-207ENST00000471342 ABCC3O15438 1527 aa14.79□□□□□ -0.04
SF3A1-207ENST00000471342 FAM135AQ9P2D6 1515 aa14.79□□□□□ -0.04
SF3A1-207ENST00000471342 IQGAP3Q86VI3 1631 aa14.78□□□□□ -0.04
SF3A1-207ENST00000471342 MYT1LQ9UL68 1186 aa14.77□□□□□ -0.05
SF3A1-207ENST00000471342 FOXD1Q16676 465 aa14.76□□□□□ -0.05
SF3A1-207ENST00000471342 GGT6Q6P531 493 aa14.76□□□□□ -0.05
SF3A1-207ENST00000471342 ANKRD30BQ9BXX2 1392 aa14.75□□□□□ -0.05
SF3A1-207ENST00000471342 PTPRTO14522 1441 aa14.75□□□□□ -0.05
SF3A1-207ENST00000471342 NPATQ14207 1427 aa14.75□□□□□ -0.05
SF3A1-207ENST00000471342 ARHGAP31Q2M1Z3 1444 aa14.75□□□□□ -0.05
SF3A1-207ENST00000471342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.74□□□□□ -0.054e-7■■■■□ 22.7
SF3A1-207ENST00000471342 PPP6R1Q9UPN7 881 aa14.74□□□□□ -0.05
SF3A1-207ENST00000471342 ADAMTSL3P82987 1691 aa14.74□□□□□ -0.05
SF3A1-207ENST00000471342 PKD2Q13563 968 aa14.73□□□□□ -0.05
SF3A1-207ENST00000471342 KDM4FA0A1W2PPD8 638 aa14.72□□□□□ -0.05
SF3A1-207ENST00000471342 TRIM52Q96A61 297 aa14.72□□□□□ -0.05
SF3A1-207ENST00000471342 NOS1P29475 1434 aa14.72□□□□□ -0.05
SF3A1-207ENST00000471342 EFCAB6Q5THR3 1501 aa14.71□□□□□ -0.05
SF3A1-207ENST00000471342 MLECQ14165 292 aa14.7□□□□□ -0.06
SF3A1-207ENST00000471342 SLC4A1APQ9BWU0 796 aaKnown RBP14.7□□□□□ -0.06
SF3A1-207ENST00000471342 ACIN1Q9UKV3 1341 aaKnown RBP14.69□□□□□ -0.06
SF3A1-207ENST00000471342 E9PCH4 1651 aa14.69□□□□□ -0.06
SF3A1-207ENST00000471342 FBXO31Q5XUX0 539 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-207ENST00000471342 ZMYM3Q14202 1370 aa14.69□□□□□ -0.06
SF3A1-207ENST00000471342 TET3O43151 1660 aa14.68□□□□□ -0.06
SF3A1-207ENST00000471342 CEP152O94986 1710 aa14.68□□□□□ -0.06
SF3A1-207ENST00000471342 WASHC2CQ9Y4E1 1318 aa14.67□□□□□ -0.06
SF3A1-207ENST00000471342 SIN3AQ96ST3 1273 aa14.66□□□□□ -0.06
SF3A1-207ENST00000471342 CAMSAP1Q5T5Y3 1602 aa14.66□□□□□ -0.06
SF3A1-207ENST00000471342 RPRD2Q5VT52 1461 aaKnown RBP14.65□□□□□ -0.06
SF3A1-207ENST00000471342 CEBPAP49715 358 aaPredicted RBP14.65□□□□□ -0.06
SF3A1-207ENST00000471342 ARID4BQ4LE39 1312 aaPredicted RBP14.65□□□□□ -0.06
SF3A1-207ENST00000471342 SYNMO15061 1565 aa14.64□□□□□ -0.07
SF3A1-207ENST00000471342 MADDQ8WXG6 1647 aa14.64□□□□□ -0.07
SF3A1-207ENST00000471342 CLTCQ00610 1675 aaKnown RBP14.64□□□□□ -0.07
SF3A1-207ENST00000471342 ZC3H13Q5T200 1668 aaKnown RBP14.64□□□□□ -0.07
SF3A1-207ENST00000471342 SPATA31D1Q6ZQQ2 1576 aa14.64□□□□□ -0.07
SF3A1-207ENST00000471342 ERVK-7P63135 1459 aa14.63□□□□□ -0.07
SF3A1-207ENST00000471342 KANK1Q14678 1352 aa14.63□□□□□ -0.07
SF3A1-207ENST00000471342 CNTLNQ9NXG0 1405 aa14.63□□□□□ -0.07
SF3A1-207ENST00000471342 UGGT1Q9NYU2 1555 aa14.62□□□□□ -0.07
SF3A1-207ENST00000471342 CLSPNQ9HAW4 1339 aa14.62□□□□□ -0.07
SF3A1-207ENST00000471342 TRPM2O94759 1503 aa14.61□□□□□ -0.07
SF3A1-207ENST00000471342 SPATA31E1Q6ZUB1 1445 aa14.6□□□□□ -0.07
SF3A1-207ENST00000471342 MROH2AA6NES4 1674 aa14.6□□□□□ -0.07
SF3A1-207ENST00000471342 PIK3C2BO00750 1634 aa14.59□□□□□ -0.07
SF3A1-207ENST00000471342 IDI1Q13907 227 aa14.59□□□□□ -0.07
SF3A1-207ENST00000471342 PTPRMP28827 1452 aa14.58□□□□□ -0.08
SF3A1-207ENST00000471342 CLTCL1P53675 1640 aa14.58□□□□□ -0.08
SF3A1-207ENST00000471342 C3P01024 1663 aa14.58□□□□□ -0.08
SF3A1-207ENST00000471342 PREX1Q8TCU6 1659 aa14.57□□□□□ -0.08
SF3A1-207ENST00000471342 CCER1Q8TC90 406 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-207ENST00000471342 FER1L4A9Z1Z3 1794 aa14.55□□□□□ -0.08
SF3A1-207ENST00000471342 RIMS1Q86UR5 1692 aaKnown RBP14.54□□□□□ -0.08
SF3A1-207ENST00000471342 SPHKAPQ2M3C7 1700 aa14.54□□□□□ -0.08
SF3A1-207ENST00000471342 NEURL4Q96JN8 1562 aa14.51□□□□□ -0.09
SF3A1-207ENST00000471342 TNRQ92752 1358 aa14.51□□□□□ -0.09
SF3A1-207ENST00000471342 ADGRB3O60242 1522 aa14.51□□□□□ -0.09
SF3A1-207ENST00000471342 SLC52A1Q9NWF4 448 aa14.5□□□□□ -0.09
SF3A1-207ENST00000471342 TMEM131LA2VDJ0 1609 aa14.5□□□□□ -0.09
SF3A1-207ENST00000471342 A2ML1A8K2U0 1454 aa14.5□□□□□ -0.09
SF3A1-207ENST00000471342 L3MBTL2Q969R5 705 aa14.49□□□□□ -0.09
SF3A1-207ENST00000471342 CCDC144AA2RUR9 1427 aa14.49□□□□□ -0.09
SF3A1-207ENST00000471342 NEUROD1Q13562 356 aa14.47□□□□□ -0.09
SF3A1-207ENST00000471342 ZFYVE9O95405 1425 aa14.47□□□□□ -0.09
SF3A1-207ENST00000471342 NBPF8Q3BBV2 869 aa14.46□□□□□ -0.09
SF3A1-207ENST00000471342 NLRP1Q9C000 1473 aa14.45□□□□□ -0.1
SF3A1-207ENST00000471342 ARHGAP23Q9P227 1491 aa14.45□□□□□ -0.1
SF3A1-207ENST00000471342 PPP1R15AO75807 674 aaPredicted RBP14.45□□□□□ -0.1
SF3A1-207ENST00000471342 CFAP65Q6ZU64 1925 aaKnown RBP14.45□□□□□ -0.1
SF3A1-207ENST00000471342 NRXN1Q9ULB1 1477 aa14.44□□□□□ -0.1
SF3A1-207ENST00000471342 TIMELESSQ9UNS1 1208 aa14.44□□□□□ -0.1
SF3A1-207ENST00000471342 NEXMIFQ5QGS0 1516 aa14.43□□□□□ -0.1
SF3A1-207ENST00000471342 ESF1Q9H501 851 aaKnown RBP14.43□□□□□ -0.1
SF3A1-207ENST00000471342 UHRF1BP1Q6BDS2 1440 aa14.42□□□□□ -0.1
SF3A1-207ENST00000471342 MYO3AQ8NEV4 1616 aa14.42□□□□□ -0.1
SF3A1-207ENST00000471342 ADGRF5Q8IZF2 1346 aa14.41□□□□□ -0.1
SF3A1-207ENST00000471342 UBR1Q8IWV7 1749 aa14.41□□□□□ -0.1
SF3A1-207ENST00000471342 LTKP29376 864 aa14.41□□□□□ -0.1
SF3A1-207ENST00000471342 SLIT1O75093 1534 aa14.41□□□□□ -0.1
SF3A1-207ENST00000471342 LMTK3Q96Q04 1460 aa14.4□□□□□ -0.1
SF3A1-207ENST00000471342 TMEM2Q9UHN6 1383 aa14.4□□□□□ -0.1
SF3A1-207ENST00000471342 RGL3Q3MIN7 710 aa14.4□□□□□ -0.1
SF3A1-207ENST00000471342 KDM5AP29375 1690 aaKnown RBP14.39□□□□□ -0.11
SF3A1-207ENST00000471342 CEP170BQ9Y4F5 1589 aaPredicted RBP14.39□□□□□ -0.11
SF3A1-207ENST00000471342 IFT172Q9UG01 1749 aa14.38□□□□□ -0.11
SF3A1-207ENST00000471342 PLPPR3Q6T4P5 718 aa14.38□□□□□ -0.11
SF3A1-207ENST00000471342 ZNF142P52746 1687 aaPredicted RBP14.38□□□□□ -0.11
SF3A1-207ENST00000471342 PRAG1Q86YV5 1406 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms