RNA–Protein interactions for RNA: ENST00000471218.5

PTPRE-207, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3 BASIC

Gene PTPRE, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-207ENST00000471218 RTEL1-TNFRSF6BF6WH68 1400 aa13.68□□□□□ -0.22
PTPRE-207ENST00000471218 NCKAP5LQ9HCH0 1330 aa13.67□□□□□ -0.22
PTPRE-207ENST00000471218 UBAP1LF5GYI3 381 aa13.67□□□□□ -0.22
PTPRE-207ENST00000471218 CLSPNQ9HAW4 1339 aa13.65□□□□□ -0.22
PTPRE-207ENST00000471218 PTPRKQ15262 1439 aa13.65□□□□□ -0.22
PTPRE-207ENST00000471218 ILDR2Q71H61 639 aa13.65□□□□□ -0.22
PTPRE-207ENST00000471218 PLXNC1O60486 1568 aa13.64□□□□□ -0.23
PTPRE-207ENST00000471218 DHX29Q7Z478 1369 aaKnown RBP13.64□□□□□ -0.23
PTPRE-207ENST00000471218 TOM1O60784 492 aa13.64□□□□□ -0.23
PTPRE-207ENST00000471218 ROCK1Q13464 1354 aa13.63□□□□□ -0.23
PTPRE-207ENST00000471218 THEMISQ8N1K5 641 aaPredicted RBP13.63□□□□□ -0.23
PTPRE-207ENST00000471218 HFM1A2PYH4 1435 aa13.63□□□□□ -0.23
PTPRE-207ENST00000471218 ZNF335Q9H4Z2 1342 aaPredicted RBP13.63□□□□□ -0.23
PTPRE-207ENST00000471218 TSPY4P0CV99 314 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 TSPY10P0CW01 314 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 FAM50AQ14320 339 aaKnown RBP13.62□□□□□ -0.23
PTPRE-207ENST00000471218 ANKLE2Q86XL3 938 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 FAM135AQ9P2D6 1515 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 ADGBQ8N7X0 1667 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 SPATA31D1Q6ZQQ2 1576 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 INO80Q9ULG1 1556 aaPredicted RBP13.62□□□□□ -0.23
PTPRE-207ENST00000471218 CEP170BQ9Y4F5 1589 aaPredicted RBP13.62□□□□□ -0.23
PTPRE-207ENST00000471218 WASHC2CQ9Y4E1 1318 aa13.62□□□□□ -0.23
PTPRE-207ENST00000471218 A2ML1A8K2U0 1454 aa13.61□□□□□ -0.23
PTPRE-207ENST00000471218 KIF3BO15066 747 aa13.61□□□□□ -0.23
PTPRE-207ENST00000471218 SHANK2Q9UPX8 1470 aa13.61□□□□□ -0.23
PTPRE-207ENST00000471218 ZNF142P52746 1687 aaPredicted RBP13.6□□□□□ -0.23
PTPRE-207ENST00000471218 CLTCQ00610 1675 aaKnown RBP13.6□□□□□ -0.23
PTPRE-207ENST00000471218 SETD5Q9C0A6 1442 aa13.6□□□□□ -0.23
PTPRE-207ENST00000471218 DNMT1P26358 1616 aaKnown RBP13.59□□□□□ -0.23
PTPRE-207ENST00000471218 CAMSAP2Q08AD1 1489 aa13.59□□□□□ -0.23
PTPRE-207ENST00000471218 MBD5Q9P267 1494 aa13.59□□□□□ -0.23
PTPRE-207ENST00000471218 TNRQ92752 1358 aa13.58□□□□□ -0.23
PTPRE-207ENST00000471218 MYO3AQ8NEV4 1616 aa13.58□□□□□ -0.24
PTPRE-207ENST00000471218 ZNF644Q9H582 1327 aaPredicted RBP13.58□□□□□ -0.24
PTPRE-207ENST00000471218 ARHGEF5Q12774 1597 aa13.58□□□□□ -0.24
PTPRE-207ENST00000471218 CPS1P31327 1500 aa13.57□□□□□ -0.24
PTPRE-207ENST00000471218 DAPK1P53355 1430 aa13.56□□□□□ -0.24
PTPRE-207ENST00000471218 ADGRL2O95490 1459 aa13.56□□□□□ -0.24
PTPRE-207ENST00000471218 PZPP20742 1482 aa13.55□□□□□ -0.24
PTPRE-207ENST00000471218 CCDC141Q6ZP82 1450 aa13.55□□□□□ -0.24
PTPRE-207ENST00000471218 ABCC5O15440 1437 aa13.55□□□□□ -0.24
PTPRE-207ENST00000471218 NLRP1Q9C000 1473 aa13.55□□□□□ -0.24
PTPRE-207ENST00000471218 SCAF1Q9H7N4 1312 aaKnown RBP13.54□□□□□ -0.24
PTPRE-207ENST00000471218 KDM5DQ9BY66 1539 aa13.54□□□□□ -0.24
PTPRE-207ENST00000471218 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
PTPRE-207ENST00000471218 RAB3GAP2Q9H2M9 1393 aa13.53□□□□□ -0.24
PTPRE-207ENST00000471218 NAIPQ13075 1403 aa13.53□□□□□ -0.24
PTPRE-207ENST00000471218 FBXO31Q5XUX0 539 aaPredicted RBP13.52□□□□□ -0.25
PTPRE-207ENST00000471218 GCC2Q8IWJ2 1684 aa13.51□□□□□ -0.25
PTPRE-207ENST00000471218 PIP4K2BP78356 416 aa13.51□□□□□ -0.25
PTPRE-207ENST00000471218 CROCC2H7BZ55 1655 aa13.5□□□□□ -0.25
PTPRE-207ENST00000471218 ANKRD30AQ9BXX3 1397 aa13.49□□□□□ -0.25
PTPRE-207ENST00000471218 UGGT1Q9NYU2 1555 aa13.49□□□□□ -0.25
PTPRE-207ENST00000471218 MAST1Q9Y2H9 1570 aa13.49□□□□□ -0.25
PTPRE-207ENST00000471218 MED14O60244 1454 aa13.48□□□□□ -0.25
PTPRE-207ENST00000471218 DHX57Q6P158 1386 aaKnown RBP13.48□□□□□ -0.25
PTPRE-207ENST00000471218 HSPA1LP34931 641 aa13.48□□□□□ -0.25
PTPRE-207ENST00000471218 NPHP4O75161 1426 aaPredicted RBP13.47□□□□□ -0.25
PTPRE-207ENST00000471218 ITGAEP38570 1179 aa13.47□□□□□ -0.25
PTPRE-207ENST00000471218 PHF23Q9BUL5 403 aaPredicted RBP13.46□□□□□ -0.25
PTPRE-207ENST00000471218 POLR1AO95602 1720 aaPredicted RBP13.46□□□□□ -0.25
PTPRE-207ENST00000471218 DEPDC5O75140 1603 aa13.46□□□□□ -0.26
PTPRE-207ENST00000471218 EID1Q9Y6B2 187 aa13.44□□□□□ -0.26
PTPRE-207ENST00000471218 NEURL4Q96JN8 1562 aa13.42□□□□□ -0.26
PTPRE-207ENST00000471218 ZC3H13Q5T200 1668 aaKnown RBP13.41□□□□□ -0.26
PTPRE-207ENST00000471218 TIMELESSQ9UNS1 1208 aa13.4□□□□□ -0.26
PTPRE-207ENST00000471218 TXNDC2Q86VQ3 553 aa13.39□□□□□ -0.27
PTPRE-207ENST00000471218 STAG3Q9UJ98 1225 aa13.39□□□□□ -0.27
PTPRE-207ENST00000471218 VWDEQ8N2E2 1590 aa13.39□□□□□ -0.27
PTPRE-207ENST00000471218 RNF17Q9BXT8 1623 aaKnown RBP13.39□□□□□ -0.27
PTPRE-207ENST00000471218 EIF2AK4Q9P2K8 1649 aaKnown RBP13.39□□□□□ -0.27
PTPRE-207ENST00000471218 ANKRD50Q9ULJ7 1429 aa13.39□□□□□ -0.27
PTPRE-207ENST00000471218 KANK1Q14678 1352 aa13.38□□□□□ -0.27
PTPRE-207ENST00000471218 ABCC3O15438 1527 aa13.38□□□□□ -0.27
PTPRE-207ENST00000471218 ARHGAP31Q2M1Z3 1444 aa13.38□□□□□ -0.27
PTPRE-207ENST00000471218 IQGAP1P46940 1657 aa13.37□□□□□ -0.27
PTPRE-207ENST00000471218 MED1Q15648 1581 aaPredicted RBP13.37□□□□□ -0.27
PTPRE-207ENST00000471218 ERVK-7P63135 1459 aa13.37□□□□□ -0.27
PTPRE-207ENST00000471218 KIF15Q9NS87 1388 aa13.37□□□□□ -0.27
PTPRE-207ENST00000471218 DUOX2Q9NRD8 1548 aa13.37□□□□□ -0.27
PTPRE-207ENST00000471218 SCAF11Q99590 1463 aaKnown RBP13.36□□□□□ -0.27
PTPRE-207ENST00000471218 ERBINQ96RT1 1412 aa13.36□□□□□ -0.27
PTPRE-207ENST00000471218 LRRC7Q96NW7 1537 aa13.35□□□□□ -0.27
PTPRE-207ENST00000471218 RRP7BPQ9NSQ0 103 aa13.35□□□□□ -0.27
PTPRE-207ENST00000471218 CHIC2Q9UKJ5 165 aa13.35□□□□□ -0.27
PTPRE-207ENST00000471218 SYNMO15061 1565 aa13.35□□□□□ -0.27
PTPRE-207ENST00000471218 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
PTPRE-207ENST00000471218 SLIT1O75093 1534 aa13.32□□□□□ -0.28
PTPRE-207ENST00000471218 ARHGAP23Q9P227 1491 aa13.31□□□□□ -0.28
PTPRE-207ENST00000471218 LTKP29376 864 aa13.31□□□□□ -0.28
PTPRE-207ENST00000471218 SLC52A1Q9NWF4 448 aa13.31□□□□□ -0.28
PTPRE-207ENST00000471218 TMEM2Q9UHN6 1383 aa13.31□□□□□ -0.28
PTPRE-207ENST00000471218 FAM135BQ49AJ0 1406 aa13.3□□□□□ -0.28
PTPRE-207ENST00000471218 KCNA6P17658 529 aa13.3□□□□□ -0.28
PTPRE-207ENST00000471218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.3□□□□□ -0.28
PTPRE-207ENST00000471218 UBR1Q8IWV7 1749 aa13.28□□□□□ -0.28
PTPRE-207ENST00000471218 UNC13BO14795 1591 aa13.28□□□□□ -0.28
PTPRE-207ENST00000471218 PRDM15P57071 1507 aaPredicted RBP13.27□□□□□ -0.29
PTPRE-207ENST00000471218 CFAP65Q6ZU64 1925 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms