RNA–Protein interactions for RNA: ENST00000470458.1

RFTN1-208, Transcript of raftlin, lipid raft linker 1, humanhuman

TSL 4

Gene RFTN1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-208ENST00000470458 CROCC2H7BZ55 1655 aa16.65■□□□□ 0.26
RFTN1-208ENST00000470458 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.64■□□□□ 0.25
RFTN1-208ENST00000470458 ERBINQ96RT1 1412 aa16.63■□□□□ 0.25
RFTN1-208ENST00000470458 LMTK3Q96Q04 1460 aa16.63■□□□□ 0.25
RFTN1-208ENST00000470458 CEBPAP49715 358 aaPredicted RBP16.63■□□□□ 0.25
RFTN1-208ENST00000470458 CLTCQ00610 1675 aaKnown RBP16.62■□□□□ 0.25
RFTN1-208ENST00000470458 KIF15Q9NS87 1388 aa16.62■□□□□ 0.25
RFTN1-208ENST00000470458 KDM5DQ9BY66 1539 aa16.61■□□□□ 0.25
RFTN1-208ENST00000470458 KANK1Q14678 1352 aa16.61■□□□□ 0.25
RFTN1-208ENST00000470458 ZC3H13Q5T200 1668 aaKnown RBP16.6■□□□□ 0.25
RFTN1-208ENST00000470458 RRP7BPQ9NSQ0 103 aa16.59■□□□□ 0.25
RFTN1-208ENST00000470458 RNF17Q9BXT8 1623 aaKnown RBP16.59■□□□□ 0.25
RFTN1-208ENST00000470458 ADGRL2O95490 1459 aa16.57■□□□□ 0.24
RFTN1-208ENST00000470458 NCOA1Q15788 1441 aa16.57■□□□□ 0.24
RFTN1-208ENST00000470458 ROCK1Q13464 1354 aa16.55■□□□□ 0.24
RFTN1-208ENST00000470458 PZPP20742 1482 aa16.54■□□□□ 0.24
RFTN1-208ENST00000470458 PTPRKQ15262 1439 aa16.54■□□□□ 0.24
RFTN1-208ENST00000470458 CHIC2Q9UKJ5 165 aa16.54■□□□□ 0.24
RFTN1-208ENST00000470458 HSPA2P54652 639 aa16.52■□□□□ 0.24
RFTN1-208ENST00000470458 PKD2Q13563 968 aa16.51■□□□□ 0.23
RFTN1-208ENST00000470458 TNRQ92752 1358 aa16.51■□□□□ 0.23
RFTN1-208ENST00000470458 NLRP1Q9C000 1473 aa16.5■□□□□ 0.23
RFTN1-208ENST00000470458 THEMISQ8N1K5 641 aaPredicted RBP16.5■□□□□ 0.23
RFTN1-208ENST00000470458 ANKRD50Q9ULJ7 1429 aa16.5■□□□□ 0.23
RFTN1-208ENST00000470458 ABCC3O15438 1527 aa16.5■□□□□ 0.23
RFTN1-208ENST00000470458 PRDM15P57071 1507 aaPredicted RBP16.5■□□□□ 0.23
RFTN1-208ENST00000470458 ARHGAP31Q2M1Z3 1444 aa16.49■□□□□ 0.23
RFTN1-208ENST00000470458 ZNF142P52746 1687 aaPredicted RBP16.49■□□□□ 0.23
RFTN1-208ENST00000470458 DEPDC5O75140 1603 aa16.48■□□□□ 0.23
RFTN1-208ENST00000470458 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.23
RFTN1-208ENST00000470458 A2ML1A8K2U0 1454 aa16.48■□□□□ 0.23
RFTN1-208ENST00000470458 ACIN1Q9UKV3 1341 aaKnown RBP16.47■□□□□ 0.23
RFTN1-208ENST00000470458 RRBP1Q9P2E9 1410 aaKnown RBP16.47■□□□□ 0.23
RFTN1-208ENST00000470458 MYO3AQ8NEV4 1616 aa16.47■□□□□ 0.23
RFTN1-208ENST00000470458 CEP170BQ9Y4F5 1589 aaPredicted RBP16.47■□□□□ 0.23
RFTN1-208ENST00000470458 PTPRTO14522 1441 aa16.46■□□□□ 0.23
RFTN1-208ENST00000470458 PLA2R1Q13018 1463 aa16.46■□□□□ 0.23
RFTN1-208ENST00000470458 CAMSAP1Q5T5Y3 1602 aa16.45■□□□□ 0.22
RFTN1-208ENST00000470458 PPARGC1BQ86YN6 1023 aaKnown RBP16.44■□□□□ 0.22
RFTN1-208ENST00000470458 MROH1Q8NDA8 1641 aa16.44■□□□□ 0.22
RFTN1-208ENST00000470458 LMTK2Q8IWU2 1503 aa16.44■□□□□ 0.22
RFTN1-208ENST00000470458 FBXO31Q5XUX0 539 aaPredicted RBP16.43■□□□□ 0.22
RFTN1-208ENST00000470458 CFAP65Q6ZU64 1925 aaKnown RBP16.43■□□□□ 0.22
RFTN1-208ENST00000470458 SPATA31D1Q6ZQQ2 1576 aa16.43■□□□□ 0.22
RFTN1-208ENST00000470458 CEP152O94986 1710 aa16.42■□□□□ 0.22
RFTN1-208ENST00000470458 ITGAEP38570 1179 aa16.42■□□□□ 0.22
RFTN1-208ENST00000470458 RPRD2Q5VT52 1461 aaKnown RBP16.42■□□□□ 0.22
RFTN1-208ENST00000470458 STRCQ7RTU9 1775 aa16.41■□□□□ 0.22
RFTN1-208ENST00000470458 ANKLE2Q86XL3 938 aa16.41■□□□□ 0.22
RFTN1-208ENST00000470458 SLC52A1Q9NWF4 448 aa16.4■□□□□ 0.22
RFTN1-208ENST00000470458 ERVK-7P63135 1459 aa16.4■□□□□ 0.22
RFTN1-208ENST00000470458 VWDEQ8N2E2 1590 aa16.39■□□□□ 0.21
RFTN1-208ENST00000470458 UGGT1Q9NYU2 1555 aa16.38■□□□□ 0.21
RFTN1-208ENST00000470458 HDGFP51858 240 aaKnown RBP16.38■□□□□ 0.21
RFTN1-208ENST00000470458 STAG3Q9UJ98 1225 aa16.38■□□□□ 0.21
RFTN1-208ENST00000470458 UNC13BO14795 1591 aa16.35■□□□□ 0.21
RFTN1-208ENST00000470458 TET3O43151 1660 aa16.35■□□□□ 0.21
RFTN1-208ENST00000470458 KDM5AP29375 1690 aaKnown RBP16.35■□□□□ 0.21
RFTN1-208ENST00000470458 EID1Q9Y6B2 187 aa16.35■□□□□ 0.21
RFTN1-208ENST00000470458 EFCAB6Q5THR3 1501 aa16.35■□□□□ 0.21
RFTN1-208ENST00000470458 GCC2Q8IWJ2 1684 aa16.34■□□□□ 0.21
RFTN1-208ENST00000470458 NUP155O75694 1391 aa16.34■□□□□ 0.21
RFTN1-208ENST00000470458 POLR1AO95602 1720 aaPredicted RBP16.33■□□□□ 0.2
RFTN1-208ENST00000470458 CERKQ8TCT0 537 aa16.32■□□□□ 0.2
RFTN1-208ENST00000470458 FBXO41Q8TF61 875 aa16.32■□□□□ 0.2
RFTN1-208ENST00000470458 NCKAP5LQ9HCH0 1330 aa16.32■□□□□ 0.2
RFTN1-208ENST00000470458 IQGAP3Q86VI3 1631 aa16.3■□□□□ 0.2
RFTN1-208ENST00000470458 HFM1A2PYH4 1435 aa16.29■□□□□ 0.2
RFTN1-208ENST00000470458 NOS1P29475 1434 aa16.29■□□□□ 0.2
RFTN1-208ENST00000470458 MED14O60244 1454 aa16.29■□□□□ 0.2
RFTN1-208ENST00000470458 IQSEC2Q5JU85 1478 aa16.29■□□□□ 0.2
RFTN1-208ENST00000470458 UBR1Q8IWV7 1749 aa16.28■□□□□ 0.2
RFTN1-208ENST00000470458 IDI1Q13907 227 aa16.27■□□□□ 0.2
RFTN1-208ENST00000470458 NAIPQ13075 1403 aa16.27■□□□□ 0.19
RFTN1-208ENST00000470458 TXNDC2Q86VQ3 553 aa16.26■□□□□ 0.19
RFTN1-208ENST00000470458 SLIT1O75093 1534 aa16.25■□□□□ 0.19
RFTN1-208ENST00000470458 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.25■□□□□ 0.19
RFTN1-208ENST00000470458 NPHP4O75161 1426 aaPredicted RBP16.25■□□□□ 0.19
RFTN1-208ENST00000470458 TMEM2Q9UHN6 1383 aa16.24■□□□□ 0.19
RFTN1-208ENST00000470458 PIK3C2BO00750 1634 aa16.23■□□□□ 0.19
RFTN1-208ENST00000470458 SCAF11Q99590 1463 aaKnown RBP16.23■□□□□ 0.19
RFTN1-208ENST00000470458 TRIM52Q96A61 297 aa16.23■□□□□ 0.19
RFTN1-208ENST00000470458 ARHGAP23Q9P227 1491 aa16.22■□□□□ 0.19
RFTN1-208ENST00000470458 IQGAP1P46940 1657 aa16.22■□□□□ 0.19
RFTN1-208ENST00000470458 ILDR1Q86SU0 546 aaPredicted RBP16.22■□□□□ 0.19
RFTN1-208ENST00000470458 E9PCH4 1651 aa16.21■□□□□ 0.19
RFTN1-208ENST00000470458 CPS1P31327 1500 aa16.21■□□□□ 0.19
RFTN1-208ENST00000470458 SYNMO15061 1565 aa16.21■□□□□ 0.18
RFTN1-208ENST00000470458 ADGRB3O60242 1522 aa16.2■□□□□ 0.18
RFTN1-208ENST00000470458 NEURL4Q96JN8 1562 aa16.19■□□□□ 0.18
RFTN1-208ENST00000470458 SLC4A1APQ9BWU0 796 aaKnown RBP16.18■□□□□ 0.18
RFTN1-208ENST00000470458 LTBP4Q8N2S1 1624 aa16.17■□□□□ 0.18
RFTN1-208ENST00000470458 PPP1R15AO75807 674 aaPredicted RBP16.17■□□□□ 0.18
RFTN1-208ENST00000470458 CHGAP10645 457 aaKnown RBP16.16■□□□□ 0.18
RFTN1-208ENST00000470458 BCANQ96GW7 911 aa16.16■□□□□ 0.18
RFTN1-208ENST00000470458 SPHKAPQ2M3C7 1700 aa16.16■□□□□ 0.18
RFTN1-208ENST00000470458 ZNF335Q9H4Z2 1342 aaPredicted RBP16.16■□□□□ 0.18
RFTN1-208ENST00000470458 LTKP29376 864 aa16.15■□□□□ 0.18
RFTN1-208ENST00000470458 HRCP23327 699 aa16.14■□□□□ 0.17
RFTN1-208ENST00000470458 TMEM131LA2VDJ0 1609 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms