RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 KDM5DQ9BY66 1539 aa27.61■■■□□ 2.01
COL7A1-208ENST00000470076 MIA2Q96PC5 1412 aa27.6■■■□□ 2.01
COL7A1-208ENST00000470076 MYOM3Q5VTT5 1437 aa27.59■■■□□ 2.01
COL7A1-208ENST00000470076 MAST1Q9Y2H9 1570 aa27.59■■■□□ 2.01
COL7A1-208ENST00000470076 LTBP4Q8N2S1 1624 aa27.57■■■□□ 2
COL7A1-208ENST00000470076 PKD2Q13563 968 aa27.57■■■□□ 2
COL7A1-208ENST00000470076 WASHC2CQ9Y4E1 1318 aa27.57■■■□□ 2
COL7A1-208ENST00000470076 NCKAP5LQ9HCH0 1330 aa27.56■■■□□ 2
COL7A1-208ENST00000470076 A2ML1A8K2U0 1454 aa27.56■■■□□ 2
COL7A1-208ENST00000470076 PZPP20742 1482 aa27.56■■■□□ 2
COL7A1-208ENST00000470076 TCOF1Q13428 1488 aaKnown RBP27.55■■■□□ 2
COL7A1-208ENST00000470076 TNRQ92752 1358 aa27.52■■■□□ 2
COL7A1-208ENST00000470076 DNMT1P26358 1616 aaKnown RBP27.52■■■□□ 2
COL7A1-208ENST00000470076 IQSEC2Q5JU85 1478 aa27.51■■■□□ 2
COL7A1-208ENST00000470076 APLP2Q06481 763 aa27.51■■□□□ 1.99
COL7A1-208ENST00000470076 FBXO31Q5XUX0 539 aaPredicted RBP27.51■■□□□ 1.99
COL7A1-208ENST00000470076 RNF17Q9BXT8 1623 aaKnown RBP27.5■■□□□ 1.99
COL7A1-208ENST00000470076 EIF2AK4Q9P2K8 1649 aaKnown RBP27.49■■□□□ 1.99
COL7A1-208ENST00000470076 ZC3H13Q5T200 1668 aaKnown RBP27.45■■□□□ 1.98
COL7A1-208ENST00000470076 ZNF335Q9H4Z2 1342 aaPredicted RBP27.42■■□□□ 1.98
COL7A1-208ENST00000470076 ABCC3O15438 1527 aa27.42■■□□□ 1.98
COL7A1-208ENST00000470076 DUOX2Q9NRD8 1548 aa27.42■■□□□ 1.98
COL7A1-208ENST00000470076 NLRP1Q9C000 1473 aa27.42■■□□□ 1.98
COL7A1-208ENST00000470076 POLR1AO95602 1720 aaPredicted RBP27.41■■□□□ 1.98
COL7A1-208ENST00000470076 PTPN23Q9H3S7 1636 aa27.41■■□□□ 1.98
COL7A1-208ENST00000470076 SHANK2Q9UPX8 1470 aa27.4■■□□□ 1.98
COL7A1-208ENST00000470076 CROCC2H7BZ55 1655 aa27.39■■□□□ 1.97
COL7A1-208ENST00000470076 MROH1Q8NDA8 1641 aa27.38■■□□□ 1.97
COL7A1-208ENST00000470076 ABCC5O15440 1437 aa27.37■■□□□ 1.97
COL7A1-208ENST00000470076 THEMISQ8N1K5 641 aaPredicted RBP27.37■■□□□ 1.97
COL7A1-208ENST00000470076 UGGT1Q9NYU2 1555 aa27.36■■□□□ 1.97
COL7A1-208ENST00000470076 KIF15Q9NS87 1388 aa27.35■■□□□ 1.97
COL7A1-208ENST00000470076 SPATA31D1Q6ZQQ2 1576 aa27.35■■□□□ 1.97
COL7A1-208ENST00000470076 NEURL4Q96JN8 1562 aa27.35■■□□□ 1.97
COL7A1-208ENST00000470076 FGD6Q6ZV73 1430 aa27.34■■□□□ 1.97
COL7A1-208ENST00000470076 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.34■■□□□ 1.97
COL7A1-208ENST00000470076 ANKLE2Q86XL3 938 aa27.33■■□□□ 1.97
COL7A1-208ENST00000470076 CEP152O94986 1710 aa27.33■■□□□ 1.96
COL7A1-208ENST00000470076 ERBINQ96RT1 1412 aa27.33■■□□□ 1.96
COL7A1-208ENST00000470076 DAPK1P53355 1430 aa27.32■■□□□ 1.96
COL7A1-208ENST00000470076 ERVK-7P63135 1459 aa27.32■■□□□ 1.96
COL7A1-208ENST00000470076 RRP7BPQ9NSQ0 103 aa27.29■■□□□ 1.96
COL7A1-208ENST00000470076 PRDM15P57071 1507 aaPredicted RBP27.29■■□□□ 1.96
COL7A1-208ENST00000470076 DEPDC5O75140 1603 aa27.28■■□□□ 1.96
COL7A1-208ENST00000470076 MED14O60244 1454 aa27.26■■□□□ 1.95
COL7A1-208ENST00000470076 CFAP65Q6ZU64 1925 aaKnown RBP27.26■■□□□ 1.95
COL7A1-208ENST00000470076 UBAP1LF5GYI3 381 aa27.25■■□□□ 1.95
COL7A1-208ENST00000470076 ARHGAP31Q2M1Z3 1444 aa27.24■■□□□ 1.95
COL7A1-208ENST00000470076 CPS1P31327 1500 aa27.24■■□□□ 1.95
COL7A1-208ENST00000470076 NPHP4O75161 1426 aaPredicted RBP27.24■■□□□ 1.95
COL7A1-208ENST00000470076 ANKRD30AQ9BXX3 1397 aa27.23■■□□□ 1.95
COL7A1-208ENST00000470076 KANK1Q14678 1352 aa27.2■■□□□ 1.94
COL7A1-208ENST00000470076 CHIC2Q9UKJ5 165 aa27.19■■□□□ 1.94
COL7A1-208ENST00000470076 IQGAP1P46940 1657 aa27.19■■□□□ 1.94
COL7A1-208ENST00000470076 UBR1Q8IWV7 1749 aa27.19■■□□□ 1.94
COL7A1-208ENST00000470076 VWDEQ8N2E2 1590 aa27.18■■□□□ 1.94
COL7A1-208ENST00000470076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.18■■□□□ 1.94
COL7A1-208ENST00000470076 DISP3Q9P2K9 1392 aa27.17■■□□□ 1.94
COL7A1-208ENST00000470076 ADGRL2O95490 1459 aa27.13■■□□□ 1.93
COL7A1-208ENST00000470076 LMTK2Q8IWU2 1503 aa27.13■■□□□ 1.93
COL7A1-208ENST00000470076 FAM50AQ14320 339 aaKnown RBP27.11■■□□□ 1.93
COL7A1-208ENST00000470076 SCAF11Q99590 1463 aaKnown RBP27.1■■□□□ 1.93
COL7A1-208ENST00000470076 SLIT1O75093 1534 aa27.1■■□□□ 1.93
COL7A1-208ENST00000470076 ARHGAP23Q9P227 1491 aa27.09■■□□□ 1.93
COL7A1-208ENST00000470076 TOM1O60784 492 aa27.09■■□□□ 1.93
COL7A1-208ENST00000470076 PIK3C2BO00750 1634 aa27.06■■□□□ 1.92
COL7A1-208ENST00000470076 TXNDC2Q86VQ3 553 aa27.04■■□□□ 1.92
COL7A1-208ENST00000470076 KDM5AP29375 1690 aaKnown RBP27.04■■□□□ 1.92
COL7A1-208ENST00000470076 STRCP1A6NGW2 1772 aa27.03■■□□□ 1.92
COL7A1-208ENST00000470076 LTKP29376 864 aa27.03■■□□□ 1.92
COL7A1-208ENST00000470076 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
COL7A1-208ENST00000470076 EID1Q9Y6B2 187 aa27.03■■□□□ 1.92
COL7A1-208ENST00000470076 ANKRD50Q9ULJ7 1429 aa27.02■■□□□ 1.92
COL7A1-208ENST00000470076 SCAF1Q9H7N4 1312 aaKnown RBP27.02■■□□□ 1.92
COL7A1-208ENST00000470076 STAG3Q9UJ98 1225 aa27.02■■□□□ 1.92
COL7A1-208ENST00000470076 SYNMO15061 1565 aa27.01■■□□□ 1.92
COL7A1-208ENST00000470076 PIP4K2BP78356 416 aa27.01■■□□□ 1.91
COL7A1-208ENST00000470076 TMEM2Q9UHN6 1383 aa27■■□□□ 1.91
COL7A1-208ENST00000470076 LRRC7Q96NW7 1537 aa27■■□□□ 1.91
COL7A1-208ENST00000470076 NOS1P29475 1434 aa26.99■■□□□ 1.91
COL7A1-208ENST00000470076 IDI1Q13907 227 aa26.99■■□□□ 1.91
COL7A1-208ENST00000470076 ILDR2Q71H61 639 aa26.98■■□□□ 1.91
COL7A1-208ENST00000470076 RPRD2Q5VT52 1461 aaKnown RBP26.95■■□□□ 1.91
COL7A1-208ENST00000470076 HSPA1LP34931 641 aa26.94■■□□□ 1.9
COL7A1-208ENST00000470076 SLC52A1Q9NWF4 448 aa26.94■■□□□ 1.9
COL7A1-208ENST00000470076 ALKQ9UM73 1620 aa26.94■■□□□ 1.9
COL7A1-208ENST00000470076 TET3O43151 1660 aa26.92■■□□□ 1.9
COL7A1-208ENST00000470076 ADGRB3O60242 1522 aa26.91■■□□□ 1.9
COL7A1-208ENST00000470076 ROCK1Q13464 1354 aa26.9■■□□□ 1.9
COL7A1-208ENST00000470076 UNC13BO14795 1591 aa26.89■■□□□ 1.9
COL7A1-208ENST00000470076 GCC2Q8IWJ2 1684 aa26.87■■□□□ 1.89
COL7A1-208ENST00000470076 SOCS7O14512 581 aa26.84■■□□□ 1.89
COL7A1-208ENST00000470076 XIRP1Q702N8 1843 aaKnown RBP26.83■■□□□ 1.89
COL7A1-208ENST00000470076 KCNA6P17658 529 aa26.79■■□□□ 1.88
COL7A1-208ENST00000470076 SLC26A8Q96RN1 970 aa26.79■■□□□ 1.88
COL7A1-208ENST00000470076 IQGAP3Q86VI3 1631 aa26.79■■□□□ 1.88
COL7A1-208ENST00000470076 MYO5BQ9ULV0 1848 aa26.79■■□□□ 1.88
COL7A1-208ENST00000470076 MED1Q15648 1581 aaPredicted RBP26.78■■□□□ 1.88
COL7A1-208ENST00000470076 E9PCH4 1651 aa26.78■■□□□ 1.88
COL7A1-208ENST00000470076 TMEM131LA2VDJ0 1609 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms