RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TNRQ92752 1358 aa20.84■□□□□ 0.93
CPSF4-210ENST00000469897 MYOM3Q5VTT5 1437 aa20.83■□□□□ 0.93
CPSF4-210ENST00000469897 MIA2Q96PC5 1412 aa20.83■□□□□ 0.93
CPSF4-210ENST00000469897 ARHGEF5Q12774 1597 aa20.82■□□□□ 0.92
CPSF4-210ENST00000469897 LTBP4Q8N2S1 1624 aa20.81■□□□□ 0.92
CPSF4-210ENST00000469897 A2ML1A8K2U0 1454 aa20.8■□□□□ 0.92
CPSF4-210ENST00000469897 PLA2R1Q13018 1463 aa20.8■□□□□ 0.92
CPSF4-210ENST00000469897 CEP170BQ9Y4F5 1589 aaPredicted RBP20.8■□□□□ 0.92
CPSF4-210ENST00000469897 THEMISQ8N1K5 641 aaPredicted RBP20.79■□□□□ 0.92
CPSF4-210ENST00000469897 RRP7BPQ9NSQ0 103 aa20.79■□□□□ 0.92
CPSF4-210ENST00000469897 TCOF1Q13428 1488 aaKnown RBP20.78■□□□□ 0.92
CPSF4-210ENST00000469897 KDM5DQ9BY66 1539 aa20.78■□□□□ 0.92
CPSF4-210ENST00000469897 PZPP20742 1482 aa20.77■□□□□ 0.92
CPSF4-210ENST00000469897 MYO3AQ8NEV4 1616 aa20.77■□□□□ 0.92
CPSF4-210ENST00000469897 ANKLE2Q86XL3 938 aa20.76■□□□□ 0.91
CPSF4-210ENST00000469897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.75■□□□□ 0.91
CPSF4-210ENST00000469897 UBAP1LF5GYI3 381 aa20.73■□□□□ 0.91
CPSF4-210ENST00000469897 CHIC2Q9UKJ5 165 aa20.73■□□□□ 0.91
CPSF4-210ENST00000469897 ABCC5O15440 1437 aa20.72■□□□□ 0.91
CPSF4-210ENST00000469897 DNMT1P26358 1616 aaKnown RBP20.72■□□□□ 0.91
CPSF4-210ENST00000469897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.72■□□□□ 0.91
CPSF4-210ENST00000469897 MAST1Q9Y2H9 1570 aa20.71■□□□□ 0.91
CPSF4-210ENST00000469897 FAM135AQ9P2D6 1515 aa20.7■□□□□ 0.9
CPSF4-210ENST00000469897 ZNF142P52746 1687 aaPredicted RBP20.7■□□□□ 0.9
CPSF4-210ENST00000469897 KIF15Q9NS87 1388 aa20.7■□□□□ 0.9
CPSF4-210ENST00000469897 IQSEC2Q5JU85 1478 aa20.69■□□□□ 0.9
CPSF4-210ENST00000469897 NLRP1Q9C000 1473 aa20.67■□□□□ 0.9
CPSF4-210ENST00000469897 ABCC3O15438 1527 aa20.67■□□□□ 0.9
CPSF4-210ENST00000469897 DUOX2Q9NRD8 1548 aa20.65■□□□□ 0.9
CPSF4-210ENST00000469897 FGD6Q6ZV73 1430 aa20.65■□□□□ 0.9
CPSF4-210ENST00000469897 UGGT1Q9NYU2 1555 aa20.64■□□□□ 0.9
CPSF4-210ENST00000469897 DAPK1P53355 1430 aa20.64■□□□□ 0.89
CPSF4-210ENST00000469897 DISP3Q9P2K9 1392 aa20.64■□□□□ 0.89
CPSF4-210ENST00000469897 FAM50AQ14320 339 aaKnown RBP20.63■□□□□ 0.89
CPSF4-210ENST00000469897 RNF17Q9BXT8 1623 aaKnown RBP20.61■□□□□ 0.89
CPSF4-210ENST00000469897 ERVK-7P63135 1459 aa20.61■□□□□ 0.89
CPSF4-210ENST00000469897 NPHP4O75161 1426 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-210ENST00000469897 ANKRD30AQ9BXX3 1397 aa20.6■□□□□ 0.89
CPSF4-210ENST00000469897 PTPN23Q9H3S7 1636 aa20.6■□□□□ 0.89
CPSF4-210ENST00000469897 SHANK2Q9UPX8 1470 aa20.6■□□□□ 0.89
CPSF4-210ENST00000469897 ERBINQ96RT1 1412 aa20.6■□□□□ 0.89
CPSF4-210ENST00000469897 PIP4K2BP78356 416 aa20.59■□□□□ 0.89
CPSF4-210ENST00000469897 SCAF1Q9H7N4 1312 aaKnown RBP20.58■□□□□ 0.89
CPSF4-210ENST00000469897 MROH1Q8NDA8 1641 aa20.58■□□□□ 0.89
CPSF4-210ENST00000469897 TOM1O60784 492 aa20.58■□□□□ 0.89
CPSF4-210ENST00000469897 ILDR2Q71H61 639 aa20.58■□□□□ 0.89
CPSF4-210ENST00000469897 TXNDC2Q86VQ3 553 aa20.58■□□□□ 0.89
CPSF4-210ENST00000469897 SPATA31D1Q6ZQQ2 1576 aa20.58■□□□□ 0.88
CPSF4-210ENST00000469897 NEURL4Q96JN8 1562 aa20.58■□□□□ 0.88
CPSF4-210ENST00000469897 KANK1Q14678 1352 aa20.58■□□□□ 0.88
CPSF4-210ENST00000469897 EIF2AK4Q9P2K8 1649 aaKnown RBP20.57■□□□□ 0.88
CPSF4-210ENST00000469897 LTKP29376 864 aa20.57■□□□□ 0.88
CPSF4-210ENST00000469897 MED14O60244 1454 aa20.56■□□□□ 0.88
CPSF4-210ENST00000469897 ARHGAP31Q2M1Z3 1444 aa20.55■□□□□ 0.88
CPSF4-210ENST00000469897 STAG3Q9UJ98 1225 aa20.55■□□□□ 0.88
CPSF4-210ENST00000469897 IDI1Q13907 227 aa20.54■□□□□ 0.88
CPSF4-210ENST00000469897 EID1Q9Y6B2 187 aa20.53■□□□□ 0.88
CPSF4-210ENST00000469897 ZC3H13Q5T200 1668 aaKnown RBP20.52■□□□□ 0.88
CPSF4-210ENST00000469897 CPS1P31327 1500 aa20.52■□□□□ 0.87
CPSF4-210ENST00000469897 HSPA1LP34931 641 aa20.5■□□□□ 0.87
CPSF4-210ENST00000469897 PPARGC1BQ86YN6 1023 aaKnown RBP20.49■□□□□ 0.87
CPSF4-210ENST00000469897 VWDEQ8N2E2 1590 aa20.49■□□□□ 0.87
CPSF4-210ENST00000469897 PRDM15P57071 1507 aaPredicted RBP20.48■□□□□ 0.87
CPSF4-210ENST00000469897 DEPDC5O75140 1603 aa20.47■□□□□ 0.87
CPSF4-210ENST00000469897 CEP152O94986 1710 aa20.47■□□□□ 0.87
CPSF4-210ENST00000469897 POLR1AO95602 1720 aaPredicted RBP20.46■□□□□ 0.87
CPSF4-210ENST00000469897 SCAF11Q99590 1463 aaKnown RBP20.45■□□□□ 0.86
CPSF4-210ENST00000469897 TMEM2Q9UHN6 1383 aa20.45■□□□□ 0.86
CPSF4-210ENST00000469897 CROCC2H7BZ55 1655 aa20.45■□□□□ 0.86
CPSF4-210ENST00000469897 ANKRD50Q9ULJ7 1429 aa20.44■□□□□ 0.86
CPSF4-210ENST00000469897 ADGRL2O95490 1459 aa20.43■□□□□ 0.86
CPSF4-210ENST00000469897 ARHGAP23Q9P227 1491 aa20.43■□□□□ 0.86
CPSF4-210ENST00000469897 ITGAEP38570 1179 aa20.43■□□□□ 0.86
CPSF4-210ENST00000469897 SENP3Q9H4L4 574 aaPredicted RBP20.43■□□□□ 0.86
CPSF4-210ENST00000469897 SLC52A1Q9NWF4 448 aa20.43■□□□□ 0.86
CPSF4-210ENST00000469897 LMTK2Q8IWU2 1503 aa20.42■□□□□ 0.86
CPSF4-210ENST00000469897 LRRC7Q96NW7 1537 aa20.42■□□□□ 0.86
CPSF4-210ENST00000469897 SLC26A8Q96RN1 970 aa20.41■□□□□ 0.86
CPSF4-210ENST00000469897 SLIT1O75093 1534 aa20.41■□□□□ 0.86
CPSF4-210ENST00000469897 IQGAP1P46940 1657 aa20.4■□□□□ 0.86
CPSF4-210ENST00000469897 UBR1Q8IWV7 1749 aa20.39■□□□□ 0.86
CPSF4-210ENST00000469897 NOS1P29475 1434 aa20.39■□□□□ 0.85
CPSF4-210ENST00000469897 SOCS7O14512 581 aa20.39■□□□□ 0.85
CPSF4-210ENST00000469897 BCANQ96GW7 911 aa20.39■□□□□ 0.85
CPSF4-210ENST00000469897 CFAP65Q6ZU64 1925 aaKnown RBP20.39■□□□□ 0.85
CPSF4-210ENST00000469897 KCNA6P17658 529 aa20.36■□□□□ 0.85
CPSF4-210ENST00000469897 RBM33Q96EV2 1170 aaKnown RBP20.35■□□□□ 0.85
CPSF4-210ENST00000469897 PIK3C2BO00750 1634 aa20.35■□□□□ 0.85
CPSF4-210ENST00000469897 EFCAB6Q5THR3 1501 aa20.34■□□□□ 0.85
CPSF4-210ENST00000469897 CHGAP10645 457 aaKnown RBP20.34■□□□□ 0.85
CPSF4-210ENST00000469897 HDGFP51858 240 aaKnown RBP20.32■□□□□ 0.84
CPSF4-210ENST00000469897 PROSER2Q86WR7 435 aaPredicted RBP20.32■□□□□ 0.84
CPSF4-210ENST00000469897 SYNMO15061 1565 aa20.32■□□□□ 0.84
CPSF4-210ENST00000469897 ALKQ9UM73 1620 aa20.31■□□□□ 0.84
CPSF4-210ENST00000469897 ROCK1Q13464 1354 aa20.31■□□□□ 0.84
CPSF4-210ENST00000469897 STRCP1A6NGW2 1772 aa20.3■□□□□ 0.84
CPSF4-210ENST00000469897 PPP1R15AO75807 674 aaPredicted RBP20.29■□□□□ 0.84
CPSF4-210ENST00000469897 NUP155O75694 1391 aa20.29■□□□□ 0.84
CPSF4-210ENST00000469897 RPRD2Q5VT52 1461 aaKnown RBP20.29■□□□□ 0.84
CPSF4-210ENST00000469897 NUTM2DQ5VT03 806 aaPredicted RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms