RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 MROH1Q8NDA8 1641 aa15.91■□□□□ 0.14
MSX1-202ENST00000468421 TRIM52Q96A61 297 aa15.91■□□□□ 0.14
MSX1-202ENST00000468421 IQGAP3Q86VI3 1631 aa15.9■□□□□ 0.14
MSX1-202ENST00000468421 RNF17Q9BXT8 1623 aaKnown RBP15.9■□□□□ 0.14
MSX1-202ENST00000468421 AEBP2Q6ZN18 517 aaPredicted RBP15.9■□□□□ 0.14
MSX1-202ENST00000468421 REREQ9P2R6 1566 aa15.89■□□□□ 0.13
MSX1-202ENST00000468421 PRDM15P57071 1507 aaPredicted RBP15.88■□□□□ 0.13
MSX1-202ENST00000468421 FAM135AQ9P2D6 1515 aa15.87■□□□□ 0.13
MSX1-202ENST00000468421 ACIN1Q9UKV3 1341 aaKnown RBP15.87■□□□□ 0.13
MSX1-202ENST00000468421 ATP10AO60312 1499 aa15.86■□□□□ 0.13
MSX1-202ENST00000468421 VWDEQ8N2E2 1590 aa15.86■□□□□ 0.13
MSX1-202ENST00000468421 NUP155O75694 1391 aa15.86■□□□□ 0.13
MSX1-202ENST00000468421 CEP152O94986 1710 aa15.85■□□□□ 0.13
MSX1-202ENST00000468421 MPHOSPH9Q99550 1183 aa15.84■□□□□ 0.13
MSX1-202ENST00000468421 KIF3BO15066 747 aa15.83■□□□□ 0.12
MSX1-202ENST00000468421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.82■□□□□ 0.12
MSX1-202ENST00000468421 CLSPNQ9HAW4 1339 aa15.82■□□□□ 0.12
MSX1-202ENST00000468421 TET3O43151 1660 aa15.82■□□□□ 0.12
MSX1-202ENST00000468421 E9PCH4 1651 aa15.81■□□□□ 0.12
MSX1-202ENST00000468421 AGLP35573 1532 aa15.81■□□□□ 0.12
MSX1-202ENST00000468421 SLC4A1APQ9BWU0 796 aaKnown RBP15.81■□□□□ 0.12
MSX1-202ENST00000468421 FOXD1Q16676 465 aa15.78■□□□□ 0.12
MSX1-202ENST00000468421 ZC3H13Q5T200 1668 aaKnown RBP15.77■□□□□ 0.12
MSX1-202ENST00000468421 LMTK2Q8IWU2 1503 aa15.77■□□□□ 0.11
MSX1-202ENST00000468421 CAMSAP1Q5T5Y3 1602 aa15.76■□□□□ 0.11
MSX1-202ENST00000468421 PKD2Q13563 968 aa15.76■□□□□ 0.11
MSX1-202ENST00000468421 ABCC3O15438 1527 aa15.76■□□□□ 0.11
MSX1-202ENST00000468421 KANK1Q14678 1352 aa15.75■□□□□ 0.11
MSX1-202ENST00000468421 EFCAB6Q5THR3 1501 aa15.75■□□□□ 0.11
MSX1-202ENST00000468421 ANKRD30BQ9BXX2 1392 aa15.75■□□□□ 0.11
MSX1-202ENST00000468421 SIN3AQ96ST3 1273 aa15.74■□□□□ 0.11
MSX1-202ENST00000468421 SPHKAPQ2M3C7 1700 aa15.74■□□□□ 0.11
MSX1-202ENST00000468421 GGT6Q6P531 493 aa15.73■□□□□ 0.11
MSX1-202ENST00000468421 ZEB1P37275 1124 aaPredicted RBP15.72■□□□□ 0.11
MSX1-202ENST00000468421 CLTCQ00610 1675 aaKnown RBP15.72■□□□□ 0.11
MSX1-202ENST00000468421 PLA2R1Q13018 1463 aa15.7■□□□□ 0.1
MSX1-202ENST00000468421 CFAP65Q6ZU64 1925 aaKnown RBP15.7■□□□□ 0.1
MSX1-202ENST00000468421 NEUROD1Q13562 356 aa15.68■□□□□ 0.1
MSX1-202ENST00000468421 RPRD2Q5VT52 1461 aaKnown RBP15.67■□□□□ 0.1
MSX1-202ENST00000468421 TRPM2O94759 1503 aa15.67■□□□□ 0.1
MSX1-202ENST00000468421 NPATQ14207 1427 aa15.66■□□□□ 0.1
MSX1-202ENST00000468421 WASHC2CQ9Y4E1 1318 aa15.66■□□□□ 0.1
MSX1-202ENST00000468421 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
MSX1-202ENST00000468421 PREX1Q8TCU6 1659 aa15.65■□□□□ 0.1
MSX1-202ENST00000468421 MLECQ14165 292 aa15.65■□□□□ 0.1
MSX1-202ENST00000468421 FER1L4A9Z1Z3 1794 aa15.64■□□□□ 0.1
MSX1-202ENST00000468421 PTPRTO14522 1441 aa15.64■□□□□ 0.09
MSX1-202ENST00000468421 ARHGAP31Q2M1Z3 1444 aa15.63■□□□□ 0.09
MSX1-202ENST00000468421 MROH2AA6NES4 1674 aa15.63■□□□□ 0.09
MSX1-202ENST00000468421 ARID4BQ4LE39 1312 aaPredicted RBP15.63■□□□□ 0.09
MSX1-202ENST00000468421 UGGT1Q9NYU2 1555 aa15.62■□□□□ 0.09
MSX1-202ENST00000468421 SYNMO15061 1565 aa15.62■□□□□ 0.09
MSX1-202ENST00000468421 PPP6R1Q9UPN7 881 aa15.61■□□□□ 0.09
MSX1-202ENST00000468421 CCDC144AA2RUR9 1427 aa15.6■□□□□ 0.09
MSX1-202ENST00000468421 TONSLQ96HA7 1378 aa15.6■□□□□ 0.09
MSX1-202ENST00000468421 NOS1P29475 1434 aa15.6■□□□□ 0.09
MSX1-202ENST00000468421 KIF1BO60333 1816 aa15.59■□□□□ 0.09
MSX1-202ENST00000468421 PIK3C2BO00750 1634 aa15.59■□□□□ 0.09
MSX1-202ENST00000468421 MADDQ8WXG6 1647 aa15.58■□□□□ 0.09
MSX1-202ENST00000468421 CNTLNQ9NXG0 1405 aa15.58■□□□□ 0.08
MSX1-202ENST00000468421 C3P01024 1663 aa15.57■□□□□ 0.08
MSX1-202ENST00000468421 ADAMTSL3P82987 1691 aa15.57■□□□□ 0.08
MSX1-202ENST00000468421 ERVK-7P63135 1459 aa15.57■□□□□ 0.08
MSX1-202ENST00000468421 SPATA31D1Q6ZQQ2 1576 aa15.57■□□□□ 0.08
MSX1-202ENST00000468421 RIMS1Q86UR5 1692 aaKnown RBP15.56■□□□□ 0.08
MSX1-202ENST00000468421 TIMELESSQ9UNS1 1208 aa15.55■□□□□ 0.08
MSX1-202ENST00000468421 MYO5BQ9ULV0 1848 aa15.54■□□□□ 0.08
MSX1-202ENST00000468421 SPATA31E1Q6ZUB1 1445 aa15.53■□□□□ 0.08
MSX1-202ENST00000468421 ZMYM3Q14202 1370 aa15.53■□□□□ 0.08
MSX1-202ENST00000468421 L3MBTL2Q969R5 705 aa15.53■□□□□ 0.08
MSX1-202ENST00000468421 NEURL4Q96JN8 1562 aa15.53■□□□□ 0.08
MSX1-202ENST00000468421 ADGRB3O60242 1522 aa15.53■□□□□ 0.08
MSX1-202ENST00000468421 IFT172Q9UG01 1749 aa15.52■□□□□ 0.08
MSX1-202ENST00000468421 ESF1Q9H501 851 aaKnown RBP15.52■□□□□ 0.08
MSX1-202ENST00000468421 FBXO31Q5XUX0 539 aaPredicted RBP15.51■□□□□ 0.07
MSX1-202ENST00000468421 PPP1R15AO75807 674 aaPredicted RBP15.5■□□□□ 0.07
MSX1-202ENST00000468421 TMEM131LA2VDJ0 1609 aa15.48■□□□□ 0.07
MSX1-202ENST00000468421 PPLO60437 1756 aa15.48■□□□□ 0.07
MSX1-202ENST00000468421 RGL3Q3MIN7 710 aa15.46■□□□□ 0.07
MSX1-202ENST00000468421 UHRF1BP1Q6BDS2 1440 aa15.44■□□□□ 0.06
MSX1-202ENST00000468421 CEBPAP49715 358 aaPredicted RBP15.44■□□□□ 0.06
MSX1-202ENST00000468421 IDI1Q13907 227 aa15.44■□□□□ 0.06
MSX1-202ENST00000468421 NBPF8Q3BBV2 869 aa15.44■□□□□ 0.06
MSX1-202ENST00000468421 TNRQ92752 1358 aa15.44■□□□□ 0.06
MSX1-202ENST00000468421 TRPM1Q7Z4N2 1603 aa15.43■□□□□ 0.06
MSX1-202ENST00000468421 SLC52A1Q9NWF4 448 aa15.43■□□□□ 0.06
MSX1-202ENST00000468421 UBR1Q8IWV7 1749 aa15.43■□□□□ 0.06
MSX1-202ENST00000468421 MYO3AQ8NEV4 1616 aa15.43■□□□□ 0.06
MSX1-202ENST00000468421 KDM5AP29375 1690 aaKnown RBP15.42■□□□□ 0.06
MSX1-202ENST00000468421 DCAF11Q8TEB1 546 aa15.42■□□□□ 0.06
MSX1-202ENST00000468421 NEXMIFQ5QGS0 1516 aa15.42■□□□□ 0.06
MSX1-202ENST00000468421 CHGAP10645 457 aaKnown RBP15.41■□□□□ 0.06
MSX1-202ENST00000468421 KDM2AQ9Y2K7 1162 aa15.41■□□□□ 0.06
MSX1-202ENST00000468421 PRAG1Q86YV5 1406 aa15.41■□□□□ 0.06
MSX1-202ENST00000468421 MYOM2P54296 1465 aa15.4■□□□□ 0.06
MSX1-202ENST00000468421 PLPPR3Q6T4P5 718 aa15.39■□□□□ 0.05
MSX1-202ENST00000468421 A2ML1A8K2U0 1454 aa15.39■□□□□ 0.05
MSX1-202ENST00000468421 RALGAPBQ86X10 1494 aa15.39■□□□□ 0.05
MSX1-202ENST00000468421 ZNF326Q5BKZ1 582 aaKnown RBP15.38■□□□□ 0.05
MSX1-202ENST00000468421 NLRP1Q9C000 1473 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms