RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	WASHC2C	Q9Y4E1	1318 aa		18.53	■□□□□ 0.56
CTNS-205	ENST00000467663	SHANK2	Q9UPX8	1470 aa		18.52	■□□□□ 0.56
CTNS-205	ENST00000467663	FBXO41	Q8TF61	875 aa		18.51	■□□□□ 0.55
CTNS-205	ENST00000467663	PTPRT	O14522	1441 aa		18.5	■□□□□ 0.55
CTNS-205	ENST00000467663	DAPK1	P53355	1430 aa		18.5	■□□□□ 0.55
CTNS-205	ENST00000467663	NCOA1	Q15788	1441 aa		18.5	■□□□□ 0.55
CTNS-205	ENST00000467663	PZP	P20742	1482 aa		18.5	■□□□□ 0.55
CTNS-205	ENST00000467663	DUOX2	Q9NRD8	1548 aa		18.49	■□□□□ 0.55
CTNS-205	ENST00000467663	RNF17	Q9BXT8	1623 aa	Known RBP	18.49	■□□□□ 0.55
CTNS-205	ENST00000467663	EIF2AK4	Q9P2K8	1649 aa	Known RBP	18.49	■□□□□ 0.55
CTNS-205	ENST00000467663	MYO3A	Q8NEV4	1616 aa		18.49	■□□□□ 0.55
CTNS-205	ENST00000467663	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.48	■□□□□ 0.55
CTNS-205	ENST00000467663	DNMT1	P26358	1616 aa	Known RBP	18.48	■□□□□ 0.55
CTNS-205	ENST00000467663	CROCC2	H7BZ55	1655 aa		18.47	■□□□□ 0.55
CTNS-205	ENST00000467663	ZNF142	P52746	1687 aa	Predicted RBP	18.47	■□□□□ 0.55
CTNS-205	ENST00000467663	KIF15	Q9NS87	1388 aa		18.47	■□□□□ 0.55
CTNS-205	ENST00000467663	CAMSAP1	Q5T5Y3	1602 aa		18.47	■□□□□ 0.55
CTNS-205	ENST00000467663	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	18.47	■□□□□ 0.55
CTNS-205	ENST00000467663	RRP7BP	Q9NSQ0	103 aa		18.46	■□□□□ 0.55
CTNS-205	ENST00000467663	TNR	Q92752	1358 aa		18.45	■□□□□ 0.54
CTNS-205	ENST00000467663	CERK	Q8TCT0	537 aa		18.45	■□□□□ 0.54
CTNS-205	ENST00000467663	ERBIN	Q96RT1	1412 aa		18.45	■□□□□ 0.54
CTNS-205	ENST00000467663	A2ML1	A8K2U0	1454 aa		18.45	■□□□□ 0.54
CTNS-205	ENST00000467663	PLA2R1	Q13018	1463 aa		18.45	■□□□□ 0.54
CTNS-205	ENST00000467663	ABCC3	O15438	1527 aa		18.44	■□□□□ 0.54
CTNS-205	ENST00000467663	MROH1	Q8NDA8	1641 aa		18.44	■□□□□ 0.54
CTNS-205	ENST00000467663	ANKRD30A	Q9BXX3	1397 aa		18.42	■□□□□ 0.54
CTNS-205	ENST00000467663	ZC3H13	Q5T200	1668 aa	Known RBP	18.42	■□□□□ 0.54
CTNS-205	ENST00000467663	PKD2	Q13563	968 aa		18.42	■□□□□ 0.54
CTNS-205	ENST00000467663	CHIC2	Q9UKJ5	165 aa		18.41	■□□□□ 0.54
CTNS-205	ENST00000467663	NCKAP5L	Q9HCH0	1330 aa		18.41	■□□□□ 0.54
CTNS-205	ENST00000467663	FAM50A	Q14320	339 aa	Known RBP	18.39	■□□□□ 0.53
CTNS-205	ENST00000467663	ADGRL2	O95490	1459 aa		18.39	■□□□□ 0.53
CTNS-205	ENST00000467663	NLRP1	Q9C000	1473 aa		18.39	■□□□□ 0.53
CTNS-205	ENST00000467663	PRDM15	P57071	1507 aa	Predicted RBP	18.39	■□□□□ 0.53
CTNS-205	ENST00000467663	TRIM26	Q12899	539 aa	Predicted RBP	18.37	■□□□□ 0.53
CTNS-205	ENST00000467663	SPATA31D1	Q6ZQQ2	1576 aa		18.37	■□□□□ 0.53
CTNS-205	ENST00000467663	ARHGAP31	Q2M1Z3	1444 aa		18.36	■□□□□ 0.53
CTNS-205	ENST00000467663	ERVK-7	P63135	1459 aa		18.35	■□□□□ 0.53
CTNS-205	ENST00000467663	DEPDC5	O75140	1603 aa		18.34	■□□□□ 0.53
CTNS-205	ENST00000467663	LTBP4	Q8N2S1	1624 aa		18.34	■□□□□ 0.53
CTNS-205	ENST00000467663	THEMIS	Q8N1K5	641 aa	Predicted RBP	18.34	■□□□□ 0.53
CTNS-205	ENST00000467663	CEP152	O94986	1710 aa		18.33	■□□□□ 0.52
CTNS-205	ENST00000467663	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
CTNS-205	ENST00000467663	KANK1	Q14678	1352 aa		18.32	■□□□□ 0.52
CTNS-205	ENST00000467663	UGGT1	Q9NYU2	1555 aa		18.32	■□□□□ 0.52
CTNS-205	ENST00000467663	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	18.31	■□□□□ 0.52
CTNS-205	ENST00000467663	VWDE	Q8N2E2	1590 aa		18.3	■□□□□ 0.52
CTNS-205	ENST00000467663	LMTK2	Q8IWU2	1503 aa		18.3	■□□□□ 0.52
CTNS-205	ENST00000467663	ANKLE2	Q86XL3	938 aa		18.3	■□□□□ 0.52
CTNS-205	ENST00000467663	ANKRD50	Q9ULJ7	1429 aa		18.29	■□□□□ 0.52
CTNS-205	ENST00000467663	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	18.28	■□□□□ 0.52
CTNS-205	ENST00000467663	NEURL4	Q96JN8	1562 aa		18.27	■□□□□ 0.52
CTNS-205	ENST00000467663	PPARGC1B	Q86YN6	1023 aa	Known RBP	18.27	■□□□□ 0.52
CTNS-205	ENST00000467663	IQSEC2	Q5JU85	1478 aa		18.26	■□□□□ 0.51
CTNS-205	ENST00000467663	ROCK1	Q13464	1354 aa		18.26	■□□□□ 0.51
CTNS-205	ENST00000467663	POLR1A	O95602	1720 aa	Predicted RBP	18.25	■□□□□ 0.51
CTNS-205	ENST00000467663	MED14	O60244	1454 aa		18.25	■□□□□ 0.51
CTNS-205	ENST00000467663	NPHP4	O75161	1426 aa	Predicted RBP	18.22	■□□□□ 0.51
CTNS-205	ENST00000467663	CFAP65	Q6ZU64	1925 aa	Known RBP	18.21	■□□□□ 0.51
CTNS-205	ENST00000467663	EFCAB6	Q5THR3	1501 aa		18.21	■□□□□ 0.51
CTNS-205	ENST00000467663	UBR1	Q8IWV7	1749 aa		18.2	■□□□□ 0.5
CTNS-205	ENST00000467663	NOS1	P29475	1434 aa		18.2	■□□□□ 0.5
CTNS-205	ENST00000467663	RRBP1	Q9P2E9	1410 aa	Known RBP	18.19	■□□□□ 0.5
CTNS-205	ENST00000467663	ARHGAP23	Q9P227	1491 aa		18.19	■□□□□ 0.5
CTNS-205	ENST00000467663	IDI1	Q13907	227 aa		18.18	■□□□□ 0.5
CTNS-205	ENST00000467663	RPRD2	Q5VT52	1461 aa	Known RBP	18.18	■□□□□ 0.5
CTNS-205	ENST00000467663	SLIT1	O75093	1534 aa		18.18	■□□□□ 0.5
CTNS-205	ENST00000467663	ITGAE	P38570	1179 aa		18.17	■□□□□ 0.5
CTNS-205	ENST00000467663	UNC13B	O14795	1591 aa		18.17	■□□□□ 0.5
CTNS-205	ENST00000467663	SCAF11	Q99590	1463 aa	Known RBP	18.16	■□□□□ 0.5
CTNS-205	ENST00000467663	LTK	P29376	864 aa		18.16	■□□□□ 0.5
CTNS-205	ENST00000467663	SYNM	O15061	1565 aa		18.16	■□□□□ 0.5
CTNS-205	ENST00000467663	PIK3C2B	O00750	1634 aa		18.16	■□□□□ 0.5
CTNS-205	ENST00000467663	CPS1	P31327	1500 aa		18.15	■□□□□ 0.5
CTNS-205	ENST00000467663	TXNDC2	Q86VQ3	553 aa		18.15	■□□□□ 0.5
CTNS-205	ENST00000467663	SLC52A1	Q9NWF4	448 aa		18.15	■□□□□ 0.5
CTNS-205	ENST00000467663	IQGAP1	P46940	1657 aa		18.15	■□□□□ 0.5
CTNS-205	ENST00000467663	STAG3	Q9UJ98	1225 aa		18.14	■□□□□ 0.49
CTNS-205	ENST00000467663	TET3	O43151	1660 aa		18.14	■□□□□ 0.49
CTNS-205	ENST00000467663	TMEM2	Q9UHN6	1383 aa		18.14	■□□□□ 0.49
CTNS-205	ENST00000467663	KDM5A	P29375	1690 aa	Known RBP	18.13	■□□□□ 0.49
CTNS-205	ENST00000467663	PCGF6	Q9BYE7	350 aa		18.13	■□□□□ 0.49
CTNS-205	ENST00000467663	EID1	Q9Y6B2	187 aa		18.13	■□□□□ 0.49
CTNS-205	ENST00000467663	GCC2	Q8IWJ2	1684 aa		18.09	■□□□□ 0.49
CTNS-205	ENST00000467663	IQGAP3	Q86VI3	1631 aa		18.09	■□□□□ 0.49
CTNS-205	ENST00000467663	NUP155	O75694	1391 aa		18.09	■□□□□ 0.49
CTNS-205	ENST00000467663	UBAP1L	F5GYI3	381 aa		18.09	■□□□□ 0.49
CTNS-205	ENST00000467663	ADGRB3	O60242	1522 aa		18.08	■□□□□ 0.49
CTNS-205	ENST00000467663		E9PCH4	1651 aa		18.05	■□□□□ 0.48
CTNS-205	ENST00000467663	STRCP1	A6NGW2	1772 aa		18.03	■□□□□ 0.48
CTNS-205	ENST00000467663	NAIP	Q13075	1403 aa		18.03	■□□□□ 0.48
CTNS-205	ENST00000467663	LRRC7	Q96NW7	1537 aa		18.03	■□□□□ 0.48
CTNS-205	ENST00000467663	TOM1	O60784	492 aa		18.02	■□□□□ 0.48
CTNS-205	ENST00000467663	ZFYVE9	O95405	1425 aa		18.01	■□□□□ 0.47
CTNS-205	ENST00000467663	TMEM131L	A2VDJ0	1609 aa		18.01	■□□□□ 0.47
CTNS-205	ENST00000467663	HDGF	P51858	240 aa	Known RBP	18	■□□□□ 0.47
CTNS-205	ENST00000467663	HFM1	A2PYH4	1435 aa		17.98	■□□□□ 0.47
CTNS-205	ENST00000467663	RIMS2	Q9UQ26	1411 aa		17.98	■□□□□ 0.47
CTNS-205	ENST00000467663	PLEKHG1	Q9ULL1	1385 aa		17.97	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms