RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 KDM5DQ9BY66 1539 aa33.94■■■■□ 3.02
LIME1-203ENST00000465591 RNF17Q9BXT8 1623 aaKnown RBP33.93■■■■□ 3.02
LIME1-203ENST00000465591 ILDR1Q86SU0 546 aaPredicted RBP33.92■■■■□ 3.02
LIME1-203ENST00000465591 MYO3AQ8NEV4 1616 aa33.91■■■■□ 3.02
LIME1-203ENST00000465591 EIF2AK4Q9P2K8 1649 aaKnown RBP33.9■■■■□ 3.02
LIME1-203ENST00000465591 FAM135AQ9P2D6 1515 aa33.9■■■■□ 3.02
LIME1-203ENST00000465591 DUOX2Q9NRD8 1548 aa33.89■■■■□ 3.02
LIME1-203ENST00000465591 MROH1Q8NDA8 1641 aa33.87■■■■□ 3.01
LIME1-203ENST00000465591 WASHC2CQ9Y4E1 1318 aa33.86■■■■□ 3.01
LIME1-203ENST00000465591 ZNF142P52746 1687 aaPredicted RBP33.86■■■■□ 3.01
LIME1-203ENST00000465591 KIF15Q9NS87 1388 aa33.85■■■■□ 3.01
LIME1-203ENST00000465591 FBXO31Q5XUX0 539 aaPredicted RBP33.83■■■■□ 3.01
LIME1-203ENST00000465591 RRP7BPQ9NSQ0 103 aa33.83■■■■□ 3.01
LIME1-203ENST00000465591 PZPP20742 1482 aa33.82■■■■□ 3.01
LIME1-203ENST00000465591 CEP170BQ9Y4F5 1589 aaPredicted RBP33.82■■■■□ 3
LIME1-203ENST00000465591 ABCC3O15438 1527 aa33.81■■■■□ 3
LIME1-203ENST00000465591 CAMSAP1Q5T5Y3 1602 aa33.81■■■■□ 3
LIME1-203ENST00000465591 NCOA1Q15788 1441 aa33.8■■■■□ 3
LIME1-203ENST00000465591 CHIC2Q9UKJ5 165 aa33.79■■■■□ 3
LIME1-203ENST00000465591 ZC3H13Q5T200 1668 aaKnown RBP33.77■■■■□ 3
LIME1-203ENST00000465591 CEP152O94986 1710 aa33.77■■■■□ 3
LIME1-203ENST00000465591 FAM50AQ14320 339 aaKnown RBP33.77■■■■□ 3
LIME1-203ENST00000465591 ERBINQ96RT1 1412 aa33.76■■■□□ 2.99
LIME1-203ENST00000465591 TNRQ92752 1358 aa33.74■■■□□ 2.99
LIME1-203ENST00000465591 PPARGC1BQ86YN6 1023 aaKnown RBP33.73■■■□□ 2.99
LIME1-203ENST00000465591 A2ML1A8K2U0 1454 aa33.72■■■□□ 2.99
LIME1-203ENST00000465591 DMRT2Q9Y5R5 561 aa33.72■■■□□ 2.99
LIME1-203ENST00000465591 ANKRD30AQ9BXX3 1397 aa33.72■■■□□ 2.99
LIME1-203ENST00000465591 PTPRTO14522 1441 aa33.71■■■□□ 2.99
LIME1-203ENST00000465591 PRDM15P57071 1507 aaPredicted RBP33.71■■■□□ 2.99
LIME1-203ENST00000465591 ADGRL2O95490 1459 aa33.69■■■□□ 2.98
LIME1-203ENST00000465591 DEPDC5O75140 1603 aa33.69■■■□□ 2.98
LIME1-203ENST00000465591 CFAP65Q6ZU64 1925 aaKnown RBP33.68■■■□□ 2.98
LIME1-203ENST00000465591 NCKAP5LQ9HCH0 1330 aa33.67■■■□□ 2.98
LIME1-203ENST00000465591 PLA2R1Q13018 1463 aa33.66■■■□□ 2.98
LIME1-203ENST00000465591 SPATA31D1Q6ZQQ2 1576 aa33.64■■■□□ 2.98
LIME1-203ENST00000465591 FBXO41Q8TF61 875 aa33.63■■■□□ 2.97
LIME1-203ENST00000465591 ERVK-7P63135 1459 aa33.61■■■□□ 2.97
LIME1-203ENST00000465591 CERKQ8TCT0 537 aa33.6■■■□□ 2.97
LIME1-203ENST00000465591 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.6■■■□□ 2.97
LIME1-203ENST00000465591 NLRP1Q9C000 1473 aa33.58■■■□□ 2.97
LIME1-203ENST00000465591 VWDEQ8N2E2 1590 aa33.56■■■□□ 2.96
LIME1-203ENST00000465591 PKD2Q13563 968 aa33.54■■■□□ 2.96
LIME1-203ENST00000465591 ARHGAP31Q2M1Z3 1444 aa33.53■■■□□ 2.96
LIME1-203ENST00000465591 UGGT1Q9NYU2 1555 aa33.52■■■□□ 2.96
LIME1-203ENST00000465591 LTBP4Q8N2S1 1624 aa33.52■■■□□ 2.96
LIME1-203ENST00000465591 POLR1AO95602 1720 aaPredicted RBP33.51■■■□□ 2.96
LIME1-203ENST00000465591 ANKRD50Q9ULJ7 1429 aa33.51■■■□□ 2.95
LIME1-203ENST00000465591 KANK1Q14678 1352 aa33.5■■■□□ 2.95
LIME1-203ENST00000465591 LMTK2Q8IWU2 1503 aa33.5■■■□□ 2.95
LIME1-203ENST00000465591 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.49■■■□□ 2.95
LIME1-203ENST00000465591 NEURL4Q96JN8 1562 aa33.49■■■□□ 2.95
LIME1-203ENST00000465591 THEMISQ8N1K5 641 aaPredicted RBP33.44■■■□□ 2.94
LIME1-203ENST00000465591 ROCK1Q13464 1354 aa33.43■■■□□ 2.94
LIME1-203ENST00000465591 UBR1Q8IWV7 1749 aa33.42■■■□□ 2.94
LIME1-203ENST00000465591 ITGAEP38570 1179 aa33.42■■■□□ 2.94
LIME1-203ENST00000465591 ZNF335Q9H4Z2 1342 aaPredicted RBP33.42■■■□□ 2.94
LIME1-203ENST00000465591 EFCAB6Q5THR3 1501 aa33.41■■■□□ 2.94
LIME1-203ENST00000465591 ANKLE2Q86XL3 938 aa33.37■■■□□ 2.93
LIME1-203ENST00000465591 UNC13BO14795 1591 aa33.37■■■□□ 2.93
LIME1-203ENST00000465591 RRBP1Q9P2E9 1410 aaKnown RBP33.36■■■□□ 2.93
LIME1-203ENST00000465591 SYNMO15061 1565 aa33.35■■■□□ 2.93
LIME1-203ENST00000465591 PIK3C2BO00750 1634 aa33.35■■■□□ 2.93
LIME1-203ENST00000465591 MED14O60244 1454 aa33.32■■■□□ 2.92
LIME1-203ENST00000465591 NOS1P29475 1434 aa33.31■■■□□ 2.92
LIME1-203ENST00000465591 TET3O43151 1660 aa33.31■■■□□ 2.92
LIME1-203ENST00000465591 NPHP4O75161 1426 aaPredicted RBP33.29■■■□□ 2.92
LIME1-203ENST00000465591 IQGAP1P46940 1657 aa33.27■■■□□ 2.92
LIME1-203ENST00000465591 GCC2Q8IWJ2 1684 aa33.26■■■□□ 2.92
LIME1-203ENST00000465591 ARHGAP23Q9P227 1491 aa33.26■■■□□ 2.92
LIME1-203ENST00000465591 IDI1Q13907 227 aa33.26■■■□□ 2.91
LIME1-203ENST00000465591 SLIT1O75093 1534 aa33.25■■■□□ 2.91
LIME1-203ENST00000465591 IQSEC2Q5JU85 1478 aa33.25■■■□□ 2.91
LIME1-203ENST00000465591 RPRD2Q5VT52 1461 aaKnown RBP33.24■■■□□ 2.91
LIME1-203ENST00000465591 IQGAP3Q86VI3 1631 aa33.23■■■□□ 2.91
LIME1-203ENST00000465591 E9PCH4 1651 aa33.21■■■□□ 2.91
LIME1-203ENST00000465591 KDM5AP29375 1690 aaKnown RBP33.21■■■□□ 2.91
LIME1-203ENST00000465591 LTKP29376 864 aa33.21■■■□□ 2.91
LIME1-203ENST00000465591 SCAF11Q99590 1463 aaKnown RBP33.2■■■□□ 2.91
LIME1-203ENST00000465591 TMEM2Q9UHN6 1383 aa33.16■■■□□ 2.9
LIME1-203ENST00000465591 ADGRB3O60242 1522 aa33.15■■■□□ 2.9
LIME1-203ENST00000465591 NUP155O75694 1391 aa33.15■■■□□ 2.9
LIME1-203ENST00000465591 TXNDC2Q86VQ3 553 aa33.15■■■□□ 2.9
LIME1-203ENST00000465591 STAG3Q9UJ98 1225 aa33.15■■■□□ 2.9
LIME1-203ENST00000465591 STRCP1A6NGW2 1772 aa33.14■■■□□ 2.9
LIME1-203ENST00000465591 MYO5BQ9ULV0 1848 aa33.13■■■□□ 2.89
LIME1-203ENST00000465591 SLC52A1Q9NWF4 448 aa33.12■■■□□ 2.89
LIME1-203ENST00000465591 CPS1P31327 1500 aa33.12■■■□□ 2.89
LIME1-203ENST00000465591 NAIPQ13075 1403 aa33.11■■■□□ 2.89
LIME1-203ENST00000465591 EID1Q9Y6B2 187 aa33.07■■■□□ 2.88
LIME1-203ENST00000465591 TMEM131LA2VDJ0 1609 aa33.05■■■□□ 2.88
LIME1-203ENST00000465591 UBAP1LF5GYI3 381 aa33.01■■■□□ 2.87
LIME1-203ENST00000465591 HFM1A2PYH4 1435 aa32.99■■■□□ 2.87
LIME1-203ENST00000465591 ZFYVE9O95405 1425 aa32.98■■■□□ 2.87
LIME1-203ENST00000465591 LRRC7Q96NW7 1537 aa32.96■■■□□ 2.87
LIME1-203ENST00000465591 SPHKAPQ2M3C7 1700 aa32.95■■■□□ 2.87
LIME1-203ENST00000465591 RIMS2Q9UQ26 1411 aa32.93■■■□□ 2.86
LIME1-203ENST00000465591 CHGAP10645 457 aaKnown RBP32.92■■■□□ 2.86
LIME1-203ENST00000465591 SLC26A8Q96RN1 970 aa32.9■■■□□ 2.86
LIME1-203ENST00000465591 ALKQ9UM73 1620 aa32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms