RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 GGT6Q6P531 493 aa20.1■□□□□ 0.81
COL28A1-206ENST00000465339 SHANK2Q9UPX8 1470 aa20.09■□□□□ 0.81
COL28A1-206ENST00000465339 DAPK1P53355 1430 aa20.09■□□□□ 0.81
COL28A1-206ENST00000465339 KIF3BO15066 747 aa20.08■□□□□ 0.81
COL28A1-206ENST00000465339 CEBPAP49715 358 aaPredicted RBP20.08■□□□□ 0.81
COL28A1-206ENST00000465339 SETD1BQ9UPS6 1966 aaKnown RBP20.08■□□□□ 0.8
COL28A1-206ENST00000465339 MROH2AA6NES4 1674 aa20.07■□□□□ 0.8
COL28A1-206ENST00000465339 C3P01024 1663 aa20.07■□□□□ 0.8
COL28A1-206ENST00000465339 FAM50AQ14320 339 aaKnown RBP20.07■□□□□ 0.8
COL28A1-206ENST00000465339 PPARGC1BQ86YN6 1023 aaKnown RBP20.05■□□□□ 0.8
COL28A1-206ENST00000465339 CLTCQ00610 1675 aaKnown RBP20.04■□□□□ 0.8
COL28A1-206ENST00000465339 DUOX2Q9NRD8 1548 aa20.03■□□□□ 0.8
COL28A1-206ENST00000465339 ZMYM3Q14202 1370 aa20.03■□□□□ 0.8
COL28A1-206ENST00000465339 EIF2AK4Q9P2K8 1649 aaKnown RBP20.02■□□□□ 0.8
COL28A1-206ENST00000465339 LMTK3Q96Q04 1460 aa20.01■□□□□ 0.79
COL28A1-206ENST00000465339 ANKRD30AQ9BXX3 1397 aa20.01■□□□□ 0.79
COL28A1-206ENST00000465339 RRP7BPQ9NSQ0 103 aa20.01■□□□□ 0.79
COL28A1-206ENST00000465339 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
COL28A1-206ENST00000465339 PREX1Q8TCU6 1659 aa20■□□□□ 0.79
COL28A1-206ENST00000465339 KIF15Q9NS87 1388 aa20■□□□□ 0.79
COL28A1-206ENST00000465339 CHIC2Q9UKJ5 165 aa20■□□□□ 0.79
COL28A1-206ENST00000465339 WASHC2CQ9Y4E1 1318 aa19.98■□□□□ 0.79
COL28A1-206ENST00000465339 RNF17Q9BXT8 1623 aaKnown RBP19.98■□□□□ 0.79
COL28A1-206ENST00000465339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.97■□□□□ 0.79
COL28A1-206ENST00000465339 NPATQ14207 1427 aa19.97■□□□□ 0.79
COL28A1-206ENST00000465339 NCOA1Q15788 1441 aa19.97■□□□□ 0.79
COL28A1-206ENST00000465339 ERBINQ96RT1 1412 aa19.96■□□□□ 0.79
COL28A1-206ENST00000465339 ADGRL2O95490 1459 aa19.96■□□□□ 0.79
COL28A1-206ENST00000465339 KDM5DQ9BY66 1539 aa19.96■□□□□ 0.79
COL28A1-206ENST00000465339 DCAF8L1A6NGE4 600 aa19.95■□□□□ 0.78
COL28A1-206ENST00000465339 UHRF1BP1Q6BDS2 1440 aa19.94■□□□□ 0.78
COL28A1-206ENST00000465339 PTPRKQ15262 1439 aa19.92■□□□□ 0.78
COL28A1-206ENST00000465339 ZC3H13Q5T200 1668 aaKnown RBP19.91■□□□□ 0.78
COL28A1-206ENST00000465339 HSPA2P54652 639 aa19.91■□□□□ 0.78
COL28A1-206ENST00000465339 MROH1Q8NDA8 1641 aa19.89■□□□□ 0.77
COL28A1-206ENST00000465339 RRBP1Q9P2E9 1410 aaKnown RBP19.89■□□□□ 0.77
COL28A1-206ENST00000465339 ROCK1Q13464 1354 aa19.88■□□□□ 0.77
COL28A1-206ENST00000465339 DEPDC5O75140 1603 aa19.87■□□□□ 0.77
COL28A1-206ENST00000465339 ABCC3O15438 1527 aa19.87■□□□□ 0.77
COL28A1-206ENST00000465339 PZPP20742 1482 aa19.87■□□□□ 0.77
COL28A1-206ENST00000465339 PRDM15P57071 1507 aaPredicted RBP19.86■□□□□ 0.77
COL28A1-206ENST00000465339 ANKRD50Q9ULJ7 1429 aa19.85■□□□□ 0.77
COL28A1-206ENST00000465339 KANK1Q14678 1352 aa19.85■□□□□ 0.77
COL28A1-206ENST00000465339 ITGAEP38570 1179 aa19.85■□□□□ 0.77
COL28A1-206ENST00000465339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.85■□□□□ 0.77
COL28A1-206ENST00000465339 CEP152O94986 1710 aa19.85■□□□□ 0.77
COL28A1-206ENST00000465339 FBXO31Q5XUX0 539 aaPredicted RBP19.84■□□□□ 0.77
COL28A1-206ENST00000465339 CAMSAP1Q5T5Y3 1602 aa19.82■□□□□ 0.76
COL28A1-206ENST00000465339 MYO3AQ8NEV4 1616 aa19.82■□□□□ 0.76
COL28A1-206ENST00000465339 TNRQ92752 1358 aa19.81■□□□□ 0.76
COL28A1-206ENST00000465339 ZNF142P52746 1687 aaPredicted RBP19.81■□□□□ 0.76
COL28A1-206ENST00000465339 CFAP65Q6ZU64 1925 aaKnown RBP19.8■□□□□ 0.76
COL28A1-206ENST00000465339 VWDEQ8N2E2 1590 aa19.78■□□□□ 0.76
COL28A1-206ENST00000465339 CEP170BQ9Y4F5 1589 aaPredicted RBP19.78■□□□□ 0.76
COL28A1-206ENST00000465339 ARHGAP31Q2M1Z3 1444 aa19.78■□□□□ 0.76
COL28A1-206ENST00000465339 STRCQ7RTU9 1775 aa19.78■□□□□ 0.76
COL28A1-206ENST00000465339 LMTK2Q8IWU2 1503 aa19.77■□□□□ 0.76
COL28A1-206ENST00000465339 A2ML1A8K2U0 1454 aa19.77■□□□□ 0.76
COL28A1-206ENST00000465339 SPATA31D1Q6ZQQ2 1576 aa19.76■□□□□ 0.75
COL28A1-206ENST00000465339 NLRP1Q9C000 1473 aa19.75■□□□□ 0.75
COL28A1-206ENST00000465339 ERVK-7P63135 1459 aa19.74■□□□□ 0.75
COL28A1-206ENST00000465339 UNC13BO14795 1591 aa19.73■□□□□ 0.75
COL28A1-206ENST00000465339 PLA2R1Q13018 1463 aa19.71■□□□□ 0.75
COL28A1-206ENST00000465339 THEMISQ8N1K5 641 aaPredicted RBP19.7■□□□□ 0.74
COL28A1-206ENST00000465339 EFCAB6Q5THR3 1501 aa19.69■□□□□ 0.74
COL28A1-206ENST00000465339 PTPRTO14522 1441 aa19.68■□□□□ 0.74
COL28A1-206ENST00000465339 PKD2Q13563 968 aa19.68■□□□□ 0.74
COL28A1-206ENST00000465339 UGGT1Q9NYU2 1555 aa19.68■□□□□ 0.74
COL28A1-206ENST00000465339 TET3O43151 1660 aa19.68■□□□□ 0.74
COL28A1-206ENST00000465339 GCC2Q8IWJ2 1684 aa19.67■□□□□ 0.74
COL28A1-206ENST00000465339 RPRD2Q5VT52 1461 aaKnown RBP19.67■□□□□ 0.74
COL28A1-206ENST00000465339 NUP155O75694 1391 aa19.66■□□□□ 0.74
COL28A1-206ENST00000465339 NAIPQ13075 1403 aa19.66■□□□□ 0.74
COL28A1-206ENST00000465339 IQGAP3Q86VI3 1631 aa19.65■□□□□ 0.74
COL28A1-206ENST00000465339 NCKAP5LQ9HCH0 1330 aa19.65■□□□□ 0.74
COL28A1-206ENST00000465339 HFM1A2PYH4 1435 aa19.63■□□□□ 0.73
COL28A1-206ENST00000465339 NOS1P29475 1434 aa19.63■□□□□ 0.73
COL28A1-206ENST00000465339 ANKLE2Q86XL3 938 aa19.62■□□□□ 0.73
COL28A1-206ENST00000465339 UBR1Q8IWV7 1749 aa19.62■□□□□ 0.73
COL28A1-206ENST00000465339 SLC52A1Q9NWF4 448 aa19.61■□□□□ 0.73
COL28A1-206ENST00000465339 POLR1AO95602 1720 aaPredicted RBP19.61■□□□□ 0.73
COL28A1-206ENST00000465339 E9PCH4 1651 aa19.59■□□□□ 0.73
COL28A1-206ENST00000465339 SYNMO15061 1565 aa19.59■□□□□ 0.73
COL28A1-206ENST00000465339 IDI1Q13907 227 aa19.59■□□□□ 0.73
COL28A1-206ENST00000465339 KDM5AP29375 1690 aaKnown RBP19.59■□□□□ 0.73
COL28A1-206ENST00000465339 PIK3C2BO00750 1634 aa19.58■□□□□ 0.73
COL28A1-206ENST00000465339 STAG3Q9UJ98 1225 aa19.58■□□□□ 0.72
COL28A1-206ENST00000465339 MED14O60244 1454 aa19.54■□□□□ 0.72
COL28A1-206ENST00000465339 NEURL4Q96JN8 1562 aa19.53■□□□□ 0.72
COL28A1-206ENST00000465339 SLIT1O75093 1534 aa19.53■□□□□ 0.72
COL28A1-206ENST00000465339 TRIM52Q96A61 297 aa19.53■□□□□ 0.72
COL28A1-206ENST00000465339 CERKQ8TCT0 537 aa19.52■□□□□ 0.72
COL28A1-206ENST00000465339 ARHGAP23Q9P227 1491 aa19.52■□□□□ 0.72
COL28A1-206ENST00000465339 ACIN1Q9UKV3 1341 aaKnown RBP19.51■□□□□ 0.71
COL28A1-206ENST00000465339 EID1Q9Y6B2 187 aa19.51■□□□□ 0.71
COL28A1-206ENST00000465339 TMEM2Q9UHN6 1383 aa19.5■□□□□ 0.71
COL28A1-206ENST00000465339 TXNDC2Q86VQ3 553 aa19.5■□□□□ 0.71
COL28A1-206ENST00000465339 NPHP4O75161 1426 aaPredicted RBP19.5■□□□□ 0.71
COL28A1-206ENST00000465339 ADGRB3O60242 1522 aa19.49■□□□□ 0.71
COL28A1-206ENST00000465339 IQGAP1P46940 1657 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms