RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PLA2R1Q13018 1463 aa27.61■■■□□ 2.01
COL7A1-205ENST00000465238 KDM5DQ9BY66 1539 aa27.61■■■□□ 2.01
COL7A1-205ENST00000465238 MIA2Q96PC5 1412 aa27.6■■■□□ 2.01
COL7A1-205ENST00000465238 MYOM3Q5VTT5 1437 aa27.59■■■□□ 2.01
COL7A1-205ENST00000465238 MAST1Q9Y2H9 1570 aa27.59■■■□□ 2.01
COL7A1-205ENST00000465238 LTBP4Q8N2S1 1624 aa27.57■■■□□ 2
COL7A1-205ENST00000465238 PKD2Q13563 968 aa27.57■■■□□ 2
COL7A1-205ENST00000465238 WASHC2CQ9Y4E1 1318 aa27.57■■■□□ 2
COL7A1-205ENST00000465238 NCKAP5LQ9HCH0 1330 aa27.56■■■□□ 2
COL7A1-205ENST00000465238 A2ML1A8K2U0 1454 aa27.56■■■□□ 2
COL7A1-205ENST00000465238 PZPP20742 1482 aa27.56■■■□□ 2
COL7A1-205ENST00000465238 TCOF1Q13428 1488 aaKnown RBP27.55■■■□□ 2
COL7A1-205ENST00000465238 TNRQ92752 1358 aa27.52■■■□□ 2
COL7A1-205ENST00000465238 DNMT1P26358 1616 aaKnown RBP27.52■■■□□ 2
COL7A1-205ENST00000465238 IQSEC2Q5JU85 1478 aa27.51■■■□□ 2
COL7A1-205ENST00000465238 FBXO31Q5XUX0 539 aaPredicted RBP27.51■■□□□ 1.99
COL7A1-205ENST00000465238 RNF17Q9BXT8 1623 aaKnown RBP27.5■■□□□ 1.99
COL7A1-205ENST00000465238 EIF2AK4Q9P2K8 1649 aaKnown RBP27.49■■□□□ 1.99
COL7A1-205ENST00000465238 ZC3H13Q5T200 1668 aaKnown RBP27.45■■□□□ 1.98
COL7A1-205ENST00000465238 ZNF335Q9H4Z2 1342 aaPredicted RBP27.42■■□□□ 1.98
COL7A1-205ENST00000465238 ABCC3O15438 1527 aa27.42■■□□□ 1.98
COL7A1-205ENST00000465238 DUOX2Q9NRD8 1548 aa27.42■■□□□ 1.98
COL7A1-205ENST00000465238 NLRP1Q9C000 1473 aa27.42■■□□□ 1.98
COL7A1-205ENST00000465238 POLR1AO95602 1720 aaPredicted RBP27.41■■□□□ 1.98
COL7A1-205ENST00000465238 PTPN23Q9H3S7 1636 aa27.41■■□□□ 1.98
COL7A1-205ENST00000465238 SHANK2Q9UPX8 1470 aa27.4■■□□□ 1.98
COL7A1-205ENST00000465238 CROCC2H7BZ55 1655 aa27.39■■□□□ 1.97
COL7A1-205ENST00000465238 MROH1Q8NDA8 1641 aa27.38■■□□□ 1.97
COL7A1-205ENST00000465238 ABCC5O15440 1437 aa27.37■■□□□ 1.97
COL7A1-205ENST00000465238 THEMISQ8N1K5 641 aaPredicted RBP27.37■■□□□ 1.97
COL7A1-205ENST00000465238 UGGT1Q9NYU2 1555 aa27.36■■□□□ 1.97
COL7A1-205ENST00000465238 KIF15Q9NS87 1388 aa27.35■■□□□ 1.97
COL7A1-205ENST00000465238 SPATA31D1Q6ZQQ2 1576 aa27.35■■□□□ 1.97
COL7A1-205ENST00000465238 NEURL4Q96JN8 1562 aa27.35■■□□□ 1.97
COL7A1-205ENST00000465238 FGD6Q6ZV73 1430 aa27.34■■□□□ 1.97
COL7A1-205ENST00000465238 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.34■■□□□ 1.97
COL7A1-205ENST00000465238 ANKLE2Q86XL3 938 aa27.33■■□□□ 1.97
COL7A1-205ENST00000465238 CEP152O94986 1710 aa27.33■■□□□ 1.96
COL7A1-205ENST00000465238 ERBINQ96RT1 1412 aa27.33■■□□□ 1.96
COL7A1-205ENST00000465238 DAPK1P53355 1430 aa27.32■■□□□ 1.96
COL7A1-205ENST00000465238 ERVK-7P63135 1459 aa27.32■■□□□ 1.96
COL7A1-205ENST00000465238 PPARGC1BQ86YN6 1023 aaKnown RBP27.29■■□□□ 1.96
COL7A1-205ENST00000465238 RRP7BPQ9NSQ0 103 aa27.29■■□□□ 1.96
COL7A1-205ENST00000465238 PRDM15P57071 1507 aaPredicted RBP27.29■■□□□ 1.96
COL7A1-205ENST00000465238 DEPDC5O75140 1603 aa27.28■■□□□ 1.96
COL7A1-205ENST00000465238 MED14O60244 1454 aa27.26■■□□□ 1.95
COL7A1-205ENST00000465238 CFAP65Q6ZU64 1925 aaKnown RBP27.26■■□□□ 1.95
COL7A1-205ENST00000465238 UBAP1LF5GYI3 381 aa27.25■■□□□ 1.95
COL7A1-205ENST00000465238 ARHGAP31Q2M1Z3 1444 aa27.24■■□□□ 1.95
COL7A1-205ENST00000465238 CPS1P31327 1500 aa27.24■■□□□ 1.95
COL7A1-205ENST00000465238 NPHP4O75161 1426 aaPredicted RBP27.24■■□□□ 1.95
COL7A1-205ENST00000465238 ANKRD30AQ9BXX3 1397 aa27.23■■□□□ 1.95
COL7A1-205ENST00000465238 KANK1Q14678 1352 aa27.2■■□□□ 1.94
COL7A1-205ENST00000465238 CHIC2Q9UKJ5 165 aa27.19■■□□□ 1.94
COL7A1-205ENST00000465238 IQGAP1P46940 1657 aa27.19■■□□□ 1.94
COL7A1-205ENST00000465238 UBR1Q8IWV7 1749 aa27.19■■□□□ 1.94
COL7A1-205ENST00000465238 VWDEQ8N2E2 1590 aa27.18■■□□□ 1.94
COL7A1-205ENST00000465238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.18■■□□□ 1.94
COL7A1-205ENST00000465238 DISP3Q9P2K9 1392 aa27.17■■□□□ 1.94
COL7A1-205ENST00000465238 ADGRL2O95490 1459 aa27.13■■□□□ 1.93
COL7A1-205ENST00000465238 LMTK2Q8IWU2 1503 aa27.13■■□□□ 1.93
COL7A1-205ENST00000465238 FAM50AQ14320 339 aaKnown RBP27.11■■□□□ 1.93
COL7A1-205ENST00000465238 SCAF11Q99590 1463 aaKnown RBP27.1■■□□□ 1.93
COL7A1-205ENST00000465238 SLIT1O75093 1534 aa27.1■■□□□ 1.93
COL7A1-205ENST00000465238 ARHGAP23Q9P227 1491 aa27.09■■□□□ 1.93
COL7A1-205ENST00000465238 TOM1O60784 492 aa27.09■■□□□ 1.93
COL7A1-205ENST00000465238 PIK3C2BO00750 1634 aa27.06■■□□□ 1.92
COL7A1-205ENST00000465238 TXNDC2Q86VQ3 553 aa27.04■■□□□ 1.92
COL7A1-205ENST00000465238 KDM5AP29375 1690 aaKnown RBP27.04■■□□□ 1.92
COL7A1-205ENST00000465238 STRCP1A6NGW2 1772 aa27.03■■□□□ 1.92
COL7A1-205ENST00000465238 LTKP29376 864 aa27.03■■□□□ 1.92
COL7A1-205ENST00000465238 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
COL7A1-205ENST00000465238 EID1Q9Y6B2 187 aa27.03■■□□□ 1.92
COL7A1-205ENST00000465238 ANKRD50Q9ULJ7 1429 aa27.02■■□□□ 1.92
COL7A1-205ENST00000465238 SCAF1Q9H7N4 1312 aaKnown RBP27.02■■□□□ 1.92
COL7A1-205ENST00000465238 STAG3Q9UJ98 1225 aa27.02■■□□□ 1.92
COL7A1-205ENST00000465238 SYNMO15061 1565 aa27.01■■□□□ 1.92
COL7A1-205ENST00000465238 PIP4K2BP78356 416 aa27.01■■□□□ 1.91
COL7A1-205ENST00000465238 TMEM2Q9UHN6 1383 aa27■■□□□ 1.91
COL7A1-205ENST00000465238 LRRC7Q96NW7 1537 aa27■■□□□ 1.91
COL7A1-205ENST00000465238 NOS1P29475 1434 aa26.99■■□□□ 1.91
COL7A1-205ENST00000465238 IDI1Q13907 227 aa26.99■■□□□ 1.91
COL7A1-205ENST00000465238 ILDR2Q71H61 639 aa26.98■■□□□ 1.91
COL7A1-205ENST00000465238 RPRD2Q5VT52 1461 aaKnown RBP26.95■■□□□ 1.91
COL7A1-205ENST00000465238 HSPA1LP34931 641 aa26.94■■□□□ 1.9
COL7A1-205ENST00000465238 SLC52A1Q9NWF4 448 aa26.94■■□□□ 1.9
COL7A1-205ENST00000465238 ALKQ9UM73 1620 aa26.94■■□□□ 1.9
COL7A1-205ENST00000465238 TET3O43151 1660 aa26.92■■□□□ 1.9
COL7A1-205ENST00000465238 ADGRB3O60242 1522 aa26.91■■□□□ 1.9
COL7A1-205ENST00000465238 ROCK1Q13464 1354 aa26.9■■□□□ 1.9
COL7A1-205ENST00000465238 RRBP1Q9P2E9 1410 aaKnown RBP26.9■■□□□ 1.9
COL7A1-205ENST00000465238 UNC13BO14795 1591 aa26.89■■□□□ 1.9
COL7A1-205ENST00000465238 GCC2Q8IWJ2 1684 aa26.87■■□□□ 1.89
COL7A1-205ENST00000465238 ITGAEP38570 1179 aa26.85■■□□□ 1.89
COL7A1-205ENST00000465238 SOCS7O14512 581 aa26.84■■□□□ 1.89
COL7A1-205ENST00000465238 XIRP1Q702N8 1843 aaKnown RBP26.83■■□□□ 1.89
COL7A1-205ENST00000465238 KCNA6P17658 529 aa26.79■■□□□ 1.88
COL7A1-205ENST00000465238 SLC26A8Q96RN1 970 aa26.79■■□□□ 1.88
COL7A1-205ENST00000465238 IQGAP3Q86VI3 1631 aa26.79■■□□□ 1.88
COL7A1-205ENST00000465238 MYO5BQ9ULV0 1848 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms