RNA–Protein interactions for RNA: ENST00000465073.6

USP42-205, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-205ENST00000465073 FAM135AQ9P2D6 1515 aa36.06■■■■□ 3.36
USP42-205ENST00000465073 WASHC2CQ9Y4E1 1318 aa36.04■■■■□ 3.36
USP42-205ENST00000465073 MAP3K1Q13233 1512 aa36.04■■■■□ 3.36
USP42-205ENST00000465073 TCOF1Q13428 1488 aaKnown RBP36.04■■■■□ 3.36
USP42-205ENST00000465073 IQSEC2Q5JU85 1478 aa36.04■■■■□ 3.36
USP42-205ENST00000465073 A2ML1A8K2U0 1454 aa36.03■■■■□ 3.36
USP42-205ENST00000465073 KANK4Q5T7N3 995 aaPredicted RBP36.02■■■■□ 3.36
USP42-205ENST00000465073 KDM5DQ9BY66 1539 aa36.02■■■■□ 3.36
USP42-205ENST00000465073 FBXO31Q5XUX0 539 aaPredicted RBP36■■■■□ 3.35
USP42-205ENST00000465073 TNRQ92752 1358 aa36■■■■□ 3.35
USP42-205ENST00000465073 PZPP20742 1482 aa35.99■■■■□ 3.35
USP42-205ENST00000465073 ZNF335Q9H4Z2 1342 aaPredicted RBP35.97■■■■□ 3.35
USP42-205ENST00000465073 MIA2Q96PC5 1412 aa35.95■■■■□ 3.35
USP42-205ENST00000465073 DNMT1P26358 1616 aaKnown RBP35.94■■■■□ 3.34
USP42-205ENST00000465073 MYOM3Q5VTT5 1437 aa35.93■■■■□ 3.34
USP42-205ENST00000465073 MAST1Q9Y2H9 1570 aa35.91■■■■□ 3.34
USP42-205ENST00000465073 THEMISQ8N1K5 641 aaPredicted RBP35.83■■■■□ 3.33
USP42-205ENST00000465073 NLRP1Q9C000 1473 aa35.83■■■■□ 3.33
USP42-205ENST00000465073 RNF17Q9BXT8 1623 aaKnown RBP35.82■■■■□ 3.32
USP42-205ENST00000465073 APLP2Q06481 763 aa35.81■■■■□ 3.32
USP42-205ENST00000465073 ANKLE2Q86XL3 938 aa35.8■■■■□ 3.32
USP42-205ENST00000465073 EIF2AK4Q9P2K8 1649 aaKnown RBP35.78■■■■□ 3.32
USP42-205ENST00000465073 ABCC3O15438 1527 aa35.77■■■■□ 3.32
USP42-205ENST00000465073 UBAP1LF5GYI3 381 aa35.77■■■■□ 3.32
USP42-205ENST00000465073 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.76■■■■□ 3.32
USP42-205ENST00000465073 DISP3Q9P2K9 1392 aa35.75■■■■□ 3.31
USP42-205ENST00000465073 UGGT1Q9NYU2 1555 aa35.74■■■■□ 3.31
USP42-205ENST00000465073 DUOX2Q9NRD8 1548 aa35.73■■■■□ 3.31
USP42-205ENST00000465073 NEURL4Q96JN8 1562 aa35.73■■■■□ 3.31
USP42-205ENST00000465073 ZC3H13Q5T200 1668 aaKnown RBP35.73■■■■□ 3.31
USP42-205ENST00000465073 POLR1AO95602 1720 aaPredicted RBP35.72■■■■□ 3.31
USP42-205ENST00000465073 SPATA31D1Q6ZQQ2 1576 aa35.69■■■■□ 3.3
USP42-205ENST00000465073 ABCC5O15440 1437 aa35.69■■■■□ 3.3
USP42-205ENST00000465073 KIF15Q9NS87 1388 aa35.68■■■■□ 3.3
USP42-205ENST00000465073 MROH1Q8NDA8 1641 aa35.67■■■■□ 3.3
USP42-205ENST00000465073 SHANK2Q9UPX8 1470 aa35.67■■■■□ 3.3
USP42-205ENST00000465073 ERVK-7P63135 1459 aa35.66■■■■□ 3.3
USP42-205ENST00000465073 RRP7BPQ9NSQ0 103 aa35.65■■■■□ 3.3
USP42-205ENST00000465073 MED14O60244 1454 aa35.64■■■■□ 3.3
USP42-205ENST00000465073 CPS1P31327 1500 aa35.64■■■■□ 3.3
USP42-205ENST00000465073 PTPN23Q9H3S7 1636 aa35.63■■■■□ 3.29
USP42-205ENST00000465073 NPHP4O75161 1426 aaPredicted RBP35.63■■■■□ 3.29
USP42-205ENST00000465073 DEPDC5O75140 1603 aa35.62■■■■□ 3.29
USP42-205ENST00000465073 ERBINQ96RT1 1412 aa35.62■■■■□ 3.29
USP42-205ENST00000465073 FGD6Q6ZV73 1430 aa35.59■■■■□ 3.29
USP42-205ENST00000465073 DAPK1P53355 1430 aa35.58■■■■□ 3.29
USP42-205ENST00000465073 CROCC2H7BZ55 1655 aa35.57■■■■□ 3.28
USP42-205ENST00000465073 CEP152O94986 1710 aa35.56■■■■□ 3.28
USP42-205ENST00000465073 ARHGAP31Q2M1Z3 1444 aa35.55■■■■□ 3.28
USP42-205ENST00000465073 PRDM15P57071 1507 aaPredicted RBP35.55■■■■□ 3.28
USP42-205ENST00000465073 ILDR2Q71H61 639 aa35.54■■■■□ 3.28
USP42-205ENST00000465073 VWDEQ8N2E2 1590 aa35.54■■■■□ 3.28
USP42-205ENST00000465073 TOM1O60784 492 aa35.54■■■■□ 3.28
USP42-205ENST00000465073 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.52■■■■□ 3.28
USP42-205ENST00000465073 ANKRD30AQ9BXX3 1397 aa35.51■■■■□ 3.27
USP42-205ENST00000465073 KANK1Q14678 1352 aa35.49■■■■□ 3.27
USP42-205ENST00000465073 IQGAP1P46940 1657 aa35.49■■■■□ 3.27
USP42-205ENST00000465073 CHIC2Q9UKJ5 165 aa35.48■■■■□ 3.27
USP42-205ENST00000465073 CFAP65Q6ZU64 1925 aaKnown RBP35.47■■■■□ 3.27
USP42-205ENST00000465073 SCAF1Q9H7N4 1312 aaKnown RBP35.45■■■■□ 3.27
USP42-205ENST00000465073 PIP4K2BP78356 416 aa35.45■■■■□ 3.27
USP42-205ENST00000465073 UBR1Q8IWV7 1749 aa35.44■■■■□ 3.26
USP42-205ENST00000465073 SCAF11Q99590 1463 aaKnown RBP35.42■■■■□ 3.26
USP42-205ENST00000465073 TXNDC2Q86VQ3 553 aa35.4■■■■□ 3.26
USP42-205ENST00000465073 SOCS7O14512 581 aa35.39■■■■□ 3.26
USP42-205ENST00000465073 ARHGAP23Q9P227 1491 aa35.39■■■■□ 3.26
USP42-205ENST00000465073 SLIT1O75093 1534 aa35.38■■■■□ 3.25
USP42-205ENST00000465073 LTKP29376 864 aa35.38■■■■□ 3.25
USP42-205ENST00000465073 HSPA1LP34931 641 aa35.38■■■■□ 3.25
USP42-205ENST00000465073 EID1Q9Y6B2 187 aa35.37■■■■□ 3.25
USP42-205ENST00000465073 LMTK2Q8IWU2 1503 aa35.36■■■■□ 3.25
USP42-205ENST00000465073 FAM50AQ14320 339 aaKnown RBP35.33■■■■□ 3.25
USP42-205ENST00000465073 STAG3Q9UJ98 1225 aa35.33■■■■□ 3.25
USP42-205ENST00000465073 LRRC7Q96NW7 1537 aa35.33■■■■□ 3.25
USP42-205ENST00000465073 ADGRL2O95490 1459 aa35.32■■■■□ 3.24
USP42-205ENST00000465073 TMEM2Q9UHN6 1383 aa35.3■■■■□ 3.24
USP42-205ENST00000465073 IDI1Q13907 227 aa35.29■■■■□ 3.24
USP42-205ENST00000465073 STRCP1A6NGW2 1772 aa35.29■■■■□ 3.24
USP42-205ENST00000465073 PIK3C2BO00750 1634 aa35.28■■■■□ 3.24
USP42-205ENST00000465073 SYNMO15061 1565 aa35.26■■■■□ 3.24
USP42-205ENST00000465073 ALKQ9UM73 1620 aa35.25■■■■□ 3.23
USP42-205ENST00000465073 NOS1P29475 1434 aa35.23■■■■□ 3.23
USP42-205ENST00000465073 EFCAB6Q5THR3 1501 aa35.22■■■■□ 3.23
USP42-205ENST00000465073 ANKRD50Q9ULJ7 1429 aa35.22■■■■□ 3.23
USP42-205ENST00000465073 KDM5AP29375 1690 aaKnown RBP35.22■■■■□ 3.23
USP42-205ENST00000465073 SLC52A1Q9NWF4 448 aa35.2■■■■□ 3.23
USP42-205ENST00000465073 RPRD2Q5VT52 1461 aaKnown RBP35.14■■■■□ 3.22
USP42-205ENST00000465073 MED1Q15648 1581 aaPredicted RBP35.11■■■■□ 3.21
USP42-205ENST00000465073 ADGRB3O60242 1522 aa35.09■■■■□ 3.21
USP42-205ENST00000465073 KCNA6P17658 529 aa35.08■■■■□ 3.21
USP42-205ENST00000465073 SLC26A8Q96RN1 970 aa35.06■■■■□ 3.2
USP42-205ENST00000465073 TET3O43151 1660 aa35.06■■■■□ 3.2
USP42-205ENST00000465073 ROCK1Q13464 1354 aa35.04■■■■□ 3.2
USP42-205ENST00000465073 SENP3Q9H4L4 574 aaPredicted RBP35.03■■■■□ 3.2
USP42-205ENST00000465073 TMEM94Q12767 1356 aa35■■■■□ 3.19
USP42-205ENST00000465073 HDGFP51858 240 aaKnown RBP34.99■■■■□ 3.19
USP42-205ENST00000465073 PROSER2Q86WR7 435 aaPredicted RBP34.99■■■■□ 3.19
USP42-205ENST00000465073 BCANQ96GW7 911 aa34.99■■■■□ 3.19
USP42-205ENST00000465073 XIRP1Q702N8 1843 aaKnown RBP34.99■■■■□ 3.19
USP42-205ENST00000465073 UNC13BO14795 1591 aa34.97■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms