RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 FBXO31Q5XUX0 539 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-210ENST00000463041 NCOA1Q15788 1441 aa11.3□□□□□ -0.6
PTPRF-210ENST00000463041 ABCC5O15440 1437 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 CAMSAP1Q5T5Y3 1602 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 PTPN23Q9H3S7 1636 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 RRP7BPQ9NSQ0 103 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 NCKAP5LQ9HCH0 1330 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 KDM5DQ9BY66 1539 aa11.29□□□□□ -0.6
PTPRF-210ENST00000463041 FGD6Q6ZV73 1430 aa11.28□□□□□ -0.6
PTPRF-210ENST00000463041 PZPP20742 1482 aa11.28□□□□□ -0.6
PTPRF-210ENST00000463041 CFAP65Q6ZU64 1925 aaKnown RBP11.28□□□□□ -0.6
PTPRF-210ENST00000463041 DUOX2Q9NRD8 1548 aa11.28□□□□□ -0.6
PTPRF-210ENST00000463041 TNRQ92752 1358 aa11.28□□□□□ -0.6
PTPRF-210ENST00000463041 TCOF1Q13428 1488 aaKnown RBP11.27□□□□□ -0.6
PTPRF-210ENST00000463041 THEMISQ8N1K5 641 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-210ENST00000463041 EIF2AK4Q9P2K8 1649 aaKnown RBP11.27□□□□□ -0.61
PTPRF-210ENST00000463041 KIF15Q9NS87 1388 aa11.27□□□□□ -0.61
PTPRF-210ENST00000463041 A2ML1A8K2U0 1454 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 PLA2R1Q13018 1463 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 SHANK2Q9UPX8 1470 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 CEP170BQ9Y4F5 1589 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-210ENST00000463041 CHIC2Q9UKJ5 165 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 RNF17Q9BXT8 1623 aaKnown RBP11.26□□□□□ -0.61
PTPRF-210ENST00000463041 ZNF142P52746 1687 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-210ENST00000463041 ANKRD30AQ9BXX3 1397 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 DAPK1P53355 1430 aa11.26□□□□□ -0.61
PTPRF-210ENST00000463041 DNMT1P26358 1616 aaKnown RBP11.24□□□□□ -0.61
PTPRF-210ENST00000463041 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
PTPRF-210ENST00000463041 ANKLE2Q86XL3 938 aa11.24□□□□□ -0.61
PTPRF-210ENST00000463041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRF-210ENST00000463041 ERBINQ96RT1 1412 aa11.23□□□□□ -0.61
PTPRF-210ENST00000463041 NLRP1Q9C000 1473 aa11.23□□□□□ -0.61
PTPRF-210ENST00000463041 ABCC3O15438 1527 aa11.23□□□□□ -0.61
PTPRF-210ENST00000463041 CROCC2H7BZ55 1655 aa11.23□□□□□ -0.61
PTPRF-210ENST00000463041 ZC3H13Q5T200 1668 aaKnown RBP11.23□□□□□ -0.61
PTPRF-210ENST00000463041 KANK1Q14678 1352 aa11.22□□□□□ -0.61
PTPRF-210ENST00000463041 LTBP4Q8N2S1 1624 aa11.2□□□□□ -0.62
PTPRF-210ENST00000463041 ARHGAP31Q2M1Z3 1444 aa11.2□□□□□ -0.62
PTPRF-210ENST00000463041 MROH1Q8NDA8 1641 aa11.2□□□□□ -0.62
PTPRF-210ENST00000463041 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTPRF-210ENST00000463041 CEP152O94986 1710 aa11.19□□□□□ -0.62
PTPRF-210ENST00000463041 SPATA31D1Q6ZQQ2 1576 aa11.19□□□□□ -0.62
PTPRF-210ENST00000463041 UGGT1Q9NYU2 1555 aa11.19□□□□□ -0.62
PTPRF-210ENST00000463041 ERVK-7P63135 1459 aa11.19□□□□□ -0.62
PTPRF-210ENST00000463041 IQSEC2Q5JU85 1478 aa11.19□□□□□ -0.62
PTPRF-210ENST00000463041 ZNF335Q9H4Z2 1342 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-210ENST00000463041 ADGRL2O95490 1459 aa11.18□□□□□ -0.62
PTPRF-210ENST00000463041 PRDM15P57071 1507 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-210ENST00000463041 DEPDC5O75140 1603 aa11.17□□□□□ -0.62
PTPRF-210ENST00000463041 POLR1AO95602 1720 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-210ENST00000463041 MED14O60244 1454 aa11.15□□□□□ -0.62
PTPRF-210ENST00000463041 ANKRD50Q9ULJ7 1429 aa11.15□□□□□ -0.62
PTPRF-210ENST00000463041 LMTK2Q8IWU2 1503 aa11.14□□□□□ -0.63
PTPRF-210ENST00000463041 IDI1Q13907 227 aa11.14□□□□□ -0.63
PTPRF-210ENST00000463041 TXNDC2Q86VQ3 553 aa11.14□□□□□ -0.63
PTPRF-210ENST00000463041 PPARGC1BQ86YN6 1023 aaKnown RBP11.14□□□□□ -0.63
PTPRF-210ENST00000463041 STAG3Q9UJ98 1225 aa11.14□□□□□ -0.63
PTPRF-210ENST00000463041 ROCK1Q13464 1354 aa11.14□□□□□ -0.63
PTPRF-210ENST00000463041 VWDEQ8N2E2 1590 aa11.13□□□□□ -0.63
PTPRF-210ENST00000463041 NPHP4O75161 1426 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-210ENST00000463041 SLC52A1Q9NWF4 448 aa11.13□□□□□ -0.63
PTPRF-210ENST00000463041 EID1Q9Y6B2 187 aa11.13□□□□□ -0.63
PTPRF-210ENST00000463041 NEURL4Q96JN8 1562 aa11.12□□□□□ -0.63
PTPRF-210ENST00000463041 UBAP1LF5GYI3 381 aa11.12□□□□□ -0.63
PTPRF-210ENST00000463041 UBR1Q8IWV7 1749 aa11.12□□□□□ -0.63
PTPRF-210ENST00000463041 LTKP29376 864 aa11.11□□□□□ -0.63
PTPRF-210ENST00000463041 ITGAEP38570 1179 aa11.11□□□□□ -0.63
PTPRF-210ENST00000463041 TOM1O60784 492 aa11.1□□□□□ -0.63
PTPRF-210ENST00000463041 NOS1P29475 1434 aa11.09□□□□□ -0.63
PTPRF-210ENST00000463041 CPS1P31327 1500 aa11.09□□□□□ -0.63
PTPRF-210ENST00000463041 RPRD2Q5VT52 1461 aaKnown RBP11.09□□□□□ -0.63
PTPRF-210ENST00000463041 ARHGAP23Q9P227 1491 aa11.09□□□□□ -0.63
PTPRF-210ENST00000463041 SLIT1O75093 1534 aa11.09□□□□□ -0.63
PTPRF-210ENST00000463041 KDM5AP29375 1690 aaKnown RBP11.08□□□□□ -0.64
PTPRF-210ENST00000463041 IQGAP1P46940 1657 aa11.08□□□□□ -0.64
PTPRF-210ENST00000463041 SCAF11Q99590 1463 aaKnown RBP11.08□□□□□ -0.64
PTPRF-210ENST00000463041 TMEM2Q9UHN6 1383 aa11.08□□□□□ -0.64
PTPRF-210ENST00000463041 HDGFP51858 240 aaKnown RBP11.08□□□□□ -0.64
PTPRF-210ENST00000463041 EFCAB6Q5THR3 1501 aa11.08□□□□□ -0.64
PTPRF-210ENST00000463041 PIK3C2BO00750 1634 aa11.07□□□□□ -0.64
PTPRF-210ENST00000463041 NUP155O75694 1391 aa11.05□□□□□ -0.64
PTPRF-210ENST00000463041 TET3O43151 1660 aa11.05□□□□□ -0.64
PTPRF-210ENST00000463041 SYNMO15061 1565 aa11.05□□□□□ -0.64
PTPRF-210ENST00000463041 GCC2Q8IWJ2 1684 aa11.04□□□□□ -0.64
PTPRF-210ENST00000463041 UNC13BO14795 1591 aa11.04□□□□□ -0.64
PTPRF-210ENST00000463041 RRBP1Q9P2E9 1410 aaKnown RBP11.03□□□□□ -0.64
PTPRF-210ENST00000463041 KCNA6P17658 529 aa11.02□□□□□ -0.65
PTPRF-210ENST00000463041 PIP4K2BP78356 416 aa11.02□□□□□ -0.65
PTPRF-210ENST00000463041 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.02□□□□□ -0.65
PTPRF-210ENST00000463041 BCANQ96GW7 911 aa11.02□□□□□ -0.65
PTPRF-210ENST00000463041 STRCP1A6NGW2 1772 aa11.02□□□□□ -0.65
PTPRF-210ENST00000463041 LRRC7Q96NW7 1537 aa11.01□□□□□ -0.65
PTPRF-210ENST00000463041 CHGAP10645 457 aaKnown RBP11.01□□□□□ -0.65
PTPRF-210ENST00000463041 SLC26A8Q96RN1 970 aa11.01□□□□□ -0.65
PTPRF-210ENST00000463041 SCAF1Q9H7N4 1312 aaKnown RBP11.01□□□□□ -0.65
PTPRF-210ENST00000463041 IQGAP3Q86VI3 1631 aa11.01□□□□□ -0.65
PTPRF-210ENST00000463041 MYO5BQ9ULV0 1848 aa11□□□□□ -0.65
PTPRF-210ENST00000463041 ADGRB3O60242 1522 aa11□□□□□ -0.65
PTPRF-210ENST00000463041 E9PCH4 1651 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms