RNA–Protein interactions for RNA: ENST00000463020.1

SND1-203, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 793 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-203ENST00000463020 PPP6R1Q9UPN7 881 aa25.37■■□□□ 1.65
SND1-203ENST00000463020 CAMSAP2Q08AD1 1489 aa25.36■■□□□ 1.65
SND1-203ENST00000463020 NCOA2Q15596 1464 aa25.34■■□□□ 1.65
SND1-203ENST00000463020 CCDC141Q6ZP82 1450 aa25.34■■□□□ 1.65
SND1-203ENST00000463020 TNRQ92752 1358 aa25.33■■□□□ 1.65
SND1-203ENST00000463020 KIF3BO15066 747 aa25.33■■□□□ 1.65
SND1-203ENST00000463020 KDM5DQ9BY66 1539 aa25.32■■□□□ 1.64
SND1-203ENST00000463020 PZPP20742 1482 aa25.32■■□□□ 1.64
SND1-203ENST00000463020 POLR1AO95602 1720 aaPredicted RBP25.31■■□□□ 1.64
SND1-203ENST00000463020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.27■■□□□ 1.64
SND1-203ENST00000463020 VWDEQ8N2E2 1590 aa25.26■■□□□ 1.63
SND1-203ENST00000463020 SHANK2Q9UPX8 1470 aa25.24■■□□□ 1.63
SND1-203ENST00000463020 HSPA1LP34931 641 aa25.24■■□□□ 1.63
SND1-203ENST00000463020 ALKQ9UM73 1620 aa25.23■■□□□ 1.63
SND1-203ENST00000463020 WASHC2CQ9Y4E1 1318 aa25.23■■□□□ 1.63
SND1-203ENST00000463020 MIA2Q96PC5 1412 aa25.22■■□□□ 1.63
SND1-203ENST00000463020 PIP4K2BP78356 416 aa25.22■■□□□ 1.63
SND1-203ENST00000463020 ARHGEF5Q12774 1597 aa25.22■■□□□ 1.63
SND1-203ENST00000463020 FAM135AQ9P2D6 1515 aa25.22■■□□□ 1.63
SND1-203ENST00000463020 CPS1P31327 1500 aa25.2■■□□□ 1.62
SND1-203ENST00000463020 SCAF1Q9H7N4 1312 aaKnown RBP25.19■■□□□ 1.62
SND1-203ENST00000463020 UGGT1Q9NYU2 1555 aa25.18■■□□□ 1.62
SND1-203ENST00000463020 MED1Q15648 1581 aaPredicted RBP25.17■■□□□ 1.62
SND1-203ENST00000463020 ABCC3O15438 1527 aa25.17■■□□□ 1.62
SND1-203ENST00000463020 NLRP1Q9C000 1473 aa25.16■■□□□ 1.62
SND1-203ENST00000463020 RNF17Q9BXT8 1623 aaKnown RBP25.16■■□□□ 1.62
SND1-203ENST00000463020 NPHP4O75161 1426 aaPredicted RBP25.16■■□□□ 1.62
SND1-203ENST00000463020 MROH1Q8NDA8 1641 aa25.15■■□□□ 1.62
SND1-203ENST00000463020 MED14O60244 1454 aa25.15■■□□□ 1.62
SND1-203ENST00000463020 ANKLE2Q86XL3 938 aa25.15■■□□□ 1.62
SND1-203ENST00000463020 STRCP1A6NGW2 1772 aa25.15■■□□□ 1.62
SND1-203ENST00000463020 DEPDC5O75140 1603 aa25.14■■□□□ 1.61
SND1-203ENST00000463020 RSPH4AQ5TD94 716 aa25.13■■□□□ 1.61
SND1-203ENST00000463020 LRRC9Q6ZRR7 1453 aa25.13■■□□□ 1.61
SND1-203ENST00000463020 IQGAP1P46940 1657 aa25.11■■□□□ 1.61
SND1-203ENST00000463020 MAST1Q9Y2H9 1570 aa25.11■■□□□ 1.61
SND1-203ENST00000463020 THEMISQ8N1K5 641 aaPredicted RBP25.11■■□□□ 1.61
SND1-203ENST00000463020 KANK4Q5T7N3 995 aaPredicted RBP25.1■■□□□ 1.61
SND1-203ENST00000463020 ERVK-7P63135 1459 aa25.09■■□□□ 1.61
SND1-203ENST00000463020 TOM1O60784 492 aa25.09■■□□□ 1.61
SND1-203ENST00000463020 TSPY4P0CV99 314 aa25.08■■□□□ 1.61
SND1-203ENST00000463020 TSPY10P0CW01 314 aa25.08■■□□□ 1.61
SND1-203ENST00000463020 CEP152O94986 1710 aa25.06■■□□□ 1.6
SND1-203ENST00000463020 VPS8Q8N3P4 1428 aa25.06■■□□□ 1.6
SND1-203ENST00000463020 ZC3H13Q5T200 1668 aaKnown RBP25.06■■□□□ 1.6
SND1-203ENST00000463020 LRRC7Q96NW7 1537 aa25.06■■□□□ 1.6
SND1-203ENST00000463020 EIF2AK4Q9P2K8 1649 aaKnown RBP25.04■■□□□ 1.6
SND1-203ENST00000463020 LOC105371045A0A1W2PR82 267 aa25.04■■□□□ 1.6
SND1-203ENST00000463020 SENP3Q9H4L4 574 aaPredicted RBP25.03■■□□□ 1.6
SND1-203ENST00000463020 UBR1Q8IWV7 1749 aa25.02■■□□□ 1.6
SND1-203ENST00000463020 MYOM3Q5VTT5 1437 aa24.99■■□□□ 1.59
SND1-203ENST00000463020 CFAP65Q6ZU64 1925 aaKnown RBP24.98■■□□□ 1.59
SND1-203ENST00000463020 LTKP29376 864 aa24.97■■□□□ 1.59
SND1-203ENST00000463020 SYNMO15061 1565 aa24.96■■□□□ 1.59
SND1-203ENST00000463020 DUOX2Q9NRD8 1548 aa24.95■■□□□ 1.58
SND1-203ENST00000463020 SCAF11Q99590 1463 aaKnown RBP24.95■■□□□ 1.58
SND1-203ENST00000463020 ARHGAP23Q9P227 1491 aa24.94■■□□□ 1.58
SND1-203ENST00000463020 PRDM15P57071 1507 aaPredicted RBP24.93■■□□□ 1.58
SND1-203ENST00000463020 ABCC5O15440 1437 aa24.92■■□□□ 1.58
SND1-203ENST00000463020 SLIT1O75093 1534 aa24.91■■□□□ 1.58
SND1-203ENST00000463020 MAP3K1Q13233 1512 aa24.91■■□□□ 1.58
SND1-203ENST00000463020 KIF15Q9NS87 1388 aa24.91■■□□□ 1.58
SND1-203ENST00000463020 CROCC2H7BZ55 1655 aa24.91■■□□□ 1.58
SND1-203ENST00000463020 XIRP1Q702N8 1843 aaKnown RBP24.91■■□□□ 1.58
SND1-203ENST00000463020 ARHGAP31Q2M1Z3 1444 aa24.88■■□□□ 1.57
SND1-203ENST00000463020 PIK3C2BO00750 1634 aa24.88■■□□□ 1.57
SND1-203ENST00000463020 RRP7BPQ9NSQ0 103 aa24.88■■□□□ 1.57
SND1-203ENST00000463020 TXNDC2Q86VQ3 553 aa24.86■■□□□ 1.57
SND1-203ENST00000463020 PHF23Q9BUL5 403 aaPredicted RBP24.85■■□□□ 1.57
SND1-203ENST00000463020 ERBINQ96RT1 1412 aa24.85■■□□□ 1.57
SND1-203ENST00000463020 PTPN23Q9H3S7 1636 aa24.84■■□□□ 1.57
SND1-203ENST00000463020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.84■■□□□ 1.57
SND1-203ENST00000463020 DAPK1P53355 1430 aa24.82■■□□□ 1.56
SND1-203ENST00000463020 RGS17Q9UGC6 210 aaPredicted RBP24.82■■□□□ 1.56
SND1-203ENST00000463020 TMEM2Q9UHN6 1383 aa24.8■■□□□ 1.56
SND1-203ENST00000463020 RBM33Q96EV2 1170 aaKnown RBP24.76■■□□□ 1.55
SND1-203ENST00000463020 CHIC2Q9UKJ5 165 aa24.76■■□□□ 1.55
SND1-203ENST00000463020 IDI1Q13907 227 aa24.75■■□□□ 1.55
SND1-203ENST00000463020 FGD6Q6ZV73 1430 aa24.75■■□□□ 1.55
SND1-203ENST00000463020 EFCAB6Q5THR3 1501 aa24.75■■□□□ 1.55
SND1-203ENST00000463020 LMTK2Q8IWU2 1503 aa24.75■■□□□ 1.55
SND1-203ENST00000463020 TET3O43151 1660 aa24.74■■□□□ 1.55
SND1-203ENST00000463020 TMEM94Q12767 1356 aa24.73■■□□□ 1.55
SND1-203ENST00000463020 EID1Q9Y6B2 187 aa24.73■■□□□ 1.55
SND1-203ENST00000463020 SLC26A8Q96RN1 970 aa24.72■■□□□ 1.55
SND1-203ENST00000463020 NOS1P29475 1434 aa24.69■■□□□ 1.54
SND1-203ENST00000463020 KDM5AP29375 1690 aaKnown RBP24.69■■□□□ 1.54
SND1-203ENST00000463020 FAM135BQ49AJ0 1406 aa24.69■■□□□ 1.54
SND1-203ENST00000463020 KANK1Q14678 1352 aa24.68■■□□□ 1.54
SND1-203ENST00000463020 STAG3Q9UJ98 1225 aa24.68■■□□□ 1.54
SND1-203ENST00000463020 ADGRB3O60242 1522 aa24.67■■□□□ 1.54
SND1-203ENST00000463020 ROBO1Q9Y6N7 1651 aa24.66■■□□□ 1.54
SND1-203ENST00000463020 KCNA6P17658 529 aa24.66■■□□□ 1.54
SND1-203ENST00000463020 ANKRD30AQ9BXX3 1397 aa24.66■■□□□ 1.54
SND1-203ENST00000463020 NWD1Q149M9 1564 aa24.64■■□□□ 1.54
SND1-203ENST00000463020 POTEAQ6S8J7 498 aa24.63■■□□□ 1.53
SND1-203ENST00000463020 PROSER2Q86WR7 435 aaPredicted RBP24.61■■□□□ 1.53
SND1-203ENST00000463020 ADGRL2O95490 1459 aa24.6■■□□□ 1.53
SND1-203ENST00000463020 ZFYVE9O95405 1425 aa24.59■■□□□ 1.53
SND1-203ENST00000463020 MYO5BQ9ULV0 1848 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms