RNA–Protein interactions for RNA: ENST00000463005.1

GARNL3-212, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 887 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-212ENST00000463005 NPATQ14207 1427 aa13.05□□□□□ -0.32
GARNL3-212ENST00000463005 ABCC1P33527 1531 aa13.05□□□□□ -0.32
GARNL3-212ENST00000463005 IFNLR1Q8IU57 520 aaPredicted RBP13.05□□□□□ -0.32
GARNL3-212ENST00000463005 CCDC18Q5T9S5 1454 aa13.04□□□□□ -0.32
GARNL3-212ENST00000463005 CDC42BPAQ5VT25 1732 aa13.03□□□□□ -0.32
GARNL3-212ENST00000463005 ZMYM3Q14202 1370 aa13.03□□□□□ -0.32
GARNL3-212ENST00000463005 CAMSAP1Q5T5Y3 1602 aa13.02□□□□□ -0.32
GARNL3-212ENST00000463005 PKD2Q13563 968 aa13.02□□□□□ -0.33
GARNL3-212ENST00000463005 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
GARNL3-212ENST00000463005 SUPT6HQ7KZ85 1726 aaKnown RBP13□□□□□ -0.33
GARNL3-212ENST00000463005 SSUH2Q9Y2M2 353 aa13□□□□□ -0.33
GARNL3-212ENST00000463005 SAMD9LQ8IVG5 1584 aa12.99□□□□□ -0.33
GARNL3-212ENST00000463005 SPAG9O60271 1321 aaKnown RBP12.99□□□□□ -0.33
GARNL3-212ENST00000463005 SPDYE2BA6NHP3 402 aa12.99□□□□□ -0.33
GARNL3-212ENST00000463005 SPDYE6P0CI01 402 aa12.99□□□□□ -0.33
GARNL3-212ENST00000463005 SPDYE2Q495Y8 402 aa12.99□□□□□ -0.33
GARNL3-212ENST00000463005 ZNF777Q9ULD5 760 aaPredicted RBP12.99□□□□□ -0.33
GARNL3-212ENST00000463005 NCKAP5LQ9HCH0 1330 aa12.98□□□□□ -0.33
GARNL3-212ENST00000463005 UBAP1LF5GYI3 381 aa12.98□□□□□ -0.33
GARNL3-212ENST00000463005 PLA2R1Q13018 1463 aa12.97□□□□□ -0.33
GARNL3-212ENST00000463005 HNRNPMP52272 730 aaKnown RBP eCLIP12.97□□□□□ -0.33
GARNL3-212ENST00000463005 KIAA1107Q9UPP5 1409 aa12.96□□□□□ -0.33
GARNL3-212ENST00000463005 CLTCQ00610 1675 aaKnown RBP12.96□□□□□ -0.33
GARNL3-212ENST00000463005 ZNF142P52746 1687 aaPredicted RBP12.96□□□□□ -0.34
GARNL3-212ENST00000463005 ZNF335Q9H4Z2 1342 aaPredicted RBP12.95□□□□□ -0.34
GARNL3-212ENST00000463005 GPATCH8Q9UKJ3 1502 aaKnown RBP12.95□□□□□ -0.34
GARNL3-212ENST00000463005 PLEKHH2Q8IVE3 1493 aa12.95□□□□□ -0.34
GARNL3-212ENST00000463005 A2MP01023 1474 aa12.94□□□□□ -0.34
GARNL3-212ENST00000463005 GGT6Q6P531 493 aa12.94□□□□□ -0.34
GARNL3-212ENST00000463005 CFDP1Q9UEE9 299 aaPredicted RBP12.94□□□□□ -0.34
GARNL3-212ENST00000463005 PTPRKQ15262 1439 aa12.94□□□□□ -0.34
GARNL3-212ENST00000463005 ATP7AQ04656 1500 aa12.93□□□□□ -0.34
GARNL3-212ENST00000463005 SYCP2Q9BX26 1530 aa12.93□□□□□ -0.34
GARNL3-212ENST00000463005 TCOF1Q13428 1488 aaKnown RBP12.93□□□□□ -0.34
GARNL3-212ENST00000463005 FYCO1Q9BQS8 1478 aa12.93□□□□□ -0.34
GARNL3-212ENST00000463005 MYO3AQ8NEV4 1616 aa12.93□□□□□ -0.34
GARNL3-212ENST00000463005 CEP170BQ9Y4F5 1589 aaPredicted RBP12.93□□□□□ -0.34
GARNL3-212ENST00000463005 PLXNC1O60486 1568 aa12.92□□□□□ -0.34
GARNL3-212ENST00000463005 SLC24A1O60721 1099 aa12.91□□□□□ -0.34
GARNL3-212ENST00000463005 ADGBQ8N7X0 1667 aa12.91□□□□□ -0.34
GARNL3-212ENST00000463005 INO80Q9ULG1 1556 aaPredicted RBP12.9□□□□□ -0.34
GARNL3-212ENST00000463005 TOM1O60784 492 aa12.9□□□□□ -0.34
GARNL3-212ENST00000463005 CCNB3Q8WWL7 1395 aa12.9□□□□□ -0.34
GARNL3-212ENST00000463005 A2ML1A8K2U0 1454 aa12.89□□□□□ -0.35
GARNL3-212ENST00000463005 DNMT1P26358 1616 aaKnown RBP12.88□□□□□ -0.35
GARNL3-212ENST00000463005 RTEL1-TNFRSF6BF6WH68 1400 aa12.87□□□□□ -0.35
GARNL3-212ENST00000463005 CPS1P31327 1500 aa12.86□□□□□ -0.35
GARNL3-212ENST00000463005 POLR1AO95602 1720 aaPredicted RBP12.85□□□□□ -0.35
GARNL3-212ENST00000463005 MTUS2Q5JR59 1369 aa12.84□□□□□ -0.35
GARNL3-212ENST00000463005 DHX29Q7Z478 1369 aaKnown RBP12.84□□□□□ -0.35
GARNL3-212ENST00000463005 HSPA1LP34931 641 aa12.84□□□□□ -0.35
GARNL3-212ENST00000463005 RSPH4AQ5TD94 716 aa12.84□□□□□ -0.35
GARNL3-212ENST00000463005 ANKLE2Q86XL3 938 aa12.84□□□□□ -0.35
GARNL3-212ENST00000463005 THEMISQ8N1K5 641 aaPredicted RBP12.84□□□□□ -0.35
GARNL3-212ENST00000463005 SHANK2Q9UPX8 1470 aa12.83□□□□□ -0.36
GARNL3-212ENST00000463005 FAM135AQ9P2D6 1515 aa12.83□□□□□ -0.36
GARNL3-212ENST00000463005 PIP4K2BP78356 416 aa12.82□□□□□ -0.36
GARNL3-212ENST00000463005 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
GARNL3-212ENST00000463005 MBD5Q9P267 1494 aa12.82□□□□□ -0.36
GARNL3-212ENST00000463005 TNRQ92752 1358 aa12.81□□□□□ -0.36
GARNL3-212ENST00000463005 KIF3BO15066 747 aa12.81□□□□□ -0.36
GARNL3-212ENST00000463005 ZNF644Q9H582 1327 aaPredicted RBP12.81□□□□□ -0.36
GARNL3-212ENST00000463005 FBXO31Q5XUX0 539 aaPredicted RBP12.8□□□□□ -0.36
GARNL3-212ENST00000463005 MED1Q15648 1581 aaPredicted RBP12.8□□□□□ -0.36
GARNL3-212ENST00000463005 WASHC2CQ9Y4E1 1318 aa12.8□□□□□ -0.36
GARNL3-212ENST00000463005 PZPP20742 1482 aa12.79□□□□□ -0.36
GARNL3-212ENST00000463005 NEURL4Q96JN8 1562 aa12.79□□□□□ -0.36
GARNL3-212ENST00000463005 TIAM1Q13009 1591 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 PLCD3Q8N3E9 789 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 MIA2Q96PC5 1412 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 MED14O60244 1454 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 NLRP1Q9C000 1473 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 KDM5DQ9BY66 1539 aa12.78□□□□□ -0.36
GARNL3-212ENST00000463005 DEPDC5O75140 1603 aa12.77□□□□□ -0.36
GARNL3-212ENST00000463005 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.77□□□□□ -0.37
GARNL3-212ENST00000463005 MIER1Q8N108 512 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 EHBP1L1Q8N3D4 1523 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 VWDEQ8N2E2 1590 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 UGGT1Q9NYU2 1555 aa12.76□□□□□ -0.37
GARNL3-212ENST00000463005 NPHP4O75161 1426 aaPredicted RBP12.75□□□□□ -0.37
GARNL3-212ENST00000463005 TSPY4P0CV99 314 aa12.75□□□□□ -0.37
GARNL3-212ENST00000463005 TSPY10P0CW01 314 aa12.75□□□□□ -0.37
GARNL3-212ENST00000463005 CCDC141Q6ZP82 1450 aa12.75□□□□□ -0.37
GARNL3-212ENST00000463005 SPOCK2Q92563 424 aa12.72□□□□□ -0.37
GARNL3-212ENST00000463005 IQGAP1P46940 1657 aa12.72□□□□□ -0.37
GARNL3-212ENST00000463005 CFAP65Q6ZU64 1925 aaKnown RBP12.7□□□□□ -0.38
GARNL3-212ENST00000463005 ALKQ9UM73 1620 aa12.7□□□□□ -0.38
GARNL3-212ENST00000463005 ARHGEF5Q12774 1597 aa12.69□□□□□ -0.38
GARNL3-212ENST00000463005 STRCP1A6NGW2 1772 aa12.69□□□□□ -0.38
GARNL3-212ENST00000463005 LRRC7Q96NW7 1537 aa12.69□□□□□ -0.38
GARNL3-212ENST00000463005 CAMSAP2Q08AD1 1489 aa12.69□□□□□ -0.38
GARNL3-212ENST00000463005 ZC3H13Q5T200 1668 aaKnown RBP12.69□□□□□ -0.38
GARNL3-212ENST00000463005 NCOA2Q15596 1464 aa12.68□□□□□ -0.38
GARNL3-212ENST00000463005 SYNMO15061 1565 aa12.68□□□□□ -0.38
GARNL3-212ENST00000463005 RNF17Q9BXT8 1623 aaKnown RBP12.66□□□□□ -0.38
GARNL3-212ENST00000463005 EIF2AK4Q9P2K8 1649 aaKnown RBP12.65□□□□□ -0.38
GARNL3-212ENST00000463005 MAST1Q9Y2H9 1570 aa12.64□□□□□ -0.39
GARNL3-212ENST00000463005 ABCC3O15438 1527 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms