RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 CHIC2Q9UKJ5 165 aa29.01■■■□□ 2.23
COL9A3-203ENST00000462700 PREX1Q8TCU6 1659 aa29■■■□□ 2.23
COL9A3-203ENST00000462700 RNF17Q9BXT8 1623 aaKnown RBP29■■■□□ 2.23
COL9A3-203ENST00000462700 ANKRD30AQ9BXX3 1397 aa29■■■□□ 2.23
COL9A3-203ENST00000462700 KDM5DQ9BY66 1539 aa28.99■■■□□ 2.23
COL9A3-203ENST00000462700 ERBINQ96RT1 1412 aa28.98■■■□□ 2.23
COL9A3-203ENST00000462700 ADGRL2O95490 1459 aa28.97■■■□□ 2.23
COL9A3-203ENST00000462700 NPATQ14207 1427 aa28.97■■■□□ 2.23
COL9A3-203ENST00000462700 NCOA1Q15788 1441 aa28.96■■■□□ 2.23
COL9A3-203ENST00000462700 UHRF1BP1Q6BDS2 1440 aa28.95■■■□□ 2.23
COL9A3-203ENST00000462700 WASHC2CQ9Y4E1 1318 aa28.94■■■□□ 2.22
COL9A3-203ENST00000462700 HSPA2P54652 639 aa28.93■■■□□ 2.22
COL9A3-203ENST00000462700 PTPRKQ15262 1439 aa28.93■■■□□ 2.22
COL9A3-203ENST00000462700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.92■■■□□ 2.22
COL9A3-203ENST00000462700 MROH1Q8NDA8 1641 aa28.92■■■□□ 2.22
COL9A3-203ENST00000462700 SETD1BQ9UPS6 1966 aaKnown RBP28.88■■■□□ 2.21
COL9A3-203ENST00000462700 ABCC3O15438 1527 aa28.88■■■□□ 2.21
COL9A3-203ENST00000462700 ZC3H13Q5T200 1668 aaKnown RBP28.86■■■□□ 2.21
COL9A3-203ENST00000462700 PZPP20742 1482 aa28.86■■■□□ 2.21
COL9A3-203ENST00000462700 PRDM15P57071 1507 aaPredicted RBP28.86■■■□□ 2.21
COL9A3-203ENST00000462700 RRBP1Q9P2E9 1410 aaKnown RBP28.86■■■□□ 2.21
COL9A3-203ENST00000462700 DEPDC5O75140 1603 aa28.83■■■□□ 2.21
COL9A3-203ENST00000462700 ROCK1Q13464 1354 aa28.81■■■□□ 2.2
COL9A3-203ENST00000462700 MYO3AQ8NEV4 1616 aa28.8■■■□□ 2.2
COL9A3-203ENST00000462700 ANKRD50Q9ULJ7 1429 aa28.8■■■□□ 2.2
COL9A3-203ENST00000462700 ITGAEP38570 1179 aa28.79■■■□□ 2.2
COL9A3-203ENST00000462700 FBXO31Q5XUX0 539 aaPredicted RBP28.79■■■□□ 2.2
COL9A3-203ENST00000462700 CEP152O94986 1710 aa28.77■■■□□ 2.2
COL9A3-203ENST00000462700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.77■■■□□ 2.21e-6■□□□□ 8.7
COL9A3-203ENST00000462700 TNRQ92752 1358 aa28.76■■■□□ 2.2
COL9A3-203ENST00000462700 CAMSAP1Q5T5Y3 1602 aa28.76■■■□□ 2.19
COL9A3-203ENST00000462700 KANK1Q14678 1352 aa28.75■■■□□ 2.19
COL9A3-203ENST00000462700 ZNF142P52746 1687 aaPredicted RBP28.75■■■□□ 2.19
COL9A3-203ENST00000462700 CEP170BQ9Y4F5 1589 aaPredicted RBP28.74■■■□□ 2.19
COL9A3-203ENST00000462700 VWDEQ8N2E2 1590 aa28.73■■■□□ 2.19
COL9A3-203ENST00000462700 LMTK2Q8IWU2 1503 aa28.71■■■□□ 2.19
COL9A3-203ENST00000462700 ARHGAP31Q2M1Z3 1444 aa28.7■■■□□ 2.19
COL9A3-203ENST00000462700 A2ML1A8K2U0 1454 aa28.7■■■□□ 2.18
COL9A3-203ENST00000462700 SPATA31D1Q6ZQQ2 1576 aa28.7■■■□□ 2.18
COL9A3-203ENST00000462700 ERVK-7P63135 1459 aa28.69■■■□□ 2.18
COL9A3-203ENST00000462700 STRCQ7RTU9 1775 aa28.67■■■□□ 2.18
COL9A3-203ENST00000462700 NLRP1Q9C000 1473 aa28.65■■■□□ 2.18
COL9A3-203ENST00000462700 UNC13BO14795 1591 aa28.63■■■□□ 2.17
COL9A3-203ENST00000462700 PLA2R1Q13018 1463 aa28.62■■■□□ 2.17
COL9A3-203ENST00000462700 EFCAB6Q5THR3 1501 aa28.6■■■□□ 2.17
COL9A3-203ENST00000462700 DMRT2Q9Y5R5 561 aa28.6■■■□□ 2.17
COL9A3-203ENST00000462700 PTPRTO14522 1441 aa28.56■■■□□ 2.16
COL9A3-203ENST00000462700 UGGT1Q9NYU2 1555 aa28.56■■■□□ 2.16
COL9A3-203ENST00000462700 NAIPQ13075 1403 aa28.53■■■□□ 2.16
COL9A3-203ENST00000462700 NCKAP5LQ9HCH0 1330 aa28.53■■■□□ 2.16
COL9A3-203ENST00000462700 TET3O43151 1660 aa28.53■■■□□ 2.16
COL9A3-203ENST00000462700 PKD2Q13563 968 aa28.52■■■□□ 2.16
COL9A3-203ENST00000462700 IQGAP3Q86VI3 1631 aa28.51■■■□□ 2.15
COL9A3-203ENST00000462700 THEMISQ8N1K5 641 aaPredicted RBP28.51■■■□□ 2.15
COL9A3-203ENST00000462700 RPRD2Q5VT52 1461 aaKnown RBP28.51■■■□□ 2.15
COL9A3-203ENST00000462700 CFAP65Q6ZU64 1925 aaKnown RBP28.5■■■□□ 2.15
COL9A3-203ENST00000462700 GCC2Q8IWJ2 1684 aa28.5■■■□□ 2.15
COL9A3-203ENST00000462700 NOS1P29475 1434 aa28.5■■■□□ 2.15
COL9A3-203ENST00000462700 NUP155O75694 1391 aa28.5■■■□□ 2.15
COL9A3-203ENST00000462700 HFM1A2PYH4 1435 aa28.49■■■□□ 2.15
COL9A3-203ENST00000462700 SYNMO15061 1565 aa28.47■■■□□ 2.15
COL9A3-203ENST00000462700 UBR1Q8IWV7 1749 aa28.44■■■□□ 2.14
COL9A3-203ENST00000462700 PIK3C2BO00750 1634 aa28.42■■■□□ 2.14
COL9A3-203ENST00000462700 NEURL4Q96JN8 1562 aa28.41■■■□□ 2.14
COL9A3-203ENST00000462700 POLR1AO95602 1720 aaPredicted RBP28.41■■■□□ 2.14
COL9A3-203ENST00000462700 E9PCH4 1651 aa28.41■■■□□ 2.14
COL9A3-203ENST00000462700 IDI1Q13907 227 aa28.4■■■□□ 2.14
COL9A3-203ENST00000462700 ANKLE2Q86XL3 938 aa28.4■■■□□ 2.14
COL9A3-203ENST00000462700 SLC52A1Q9NWF4 448 aa28.37■■■□□ 2.13
COL9A3-203ENST00000462700 ARHGAP23Q9P227 1491 aa28.35■■■□□ 2.13
COL9A3-203ENST00000462700 SLIT1O75093 1534 aa28.35■■■□□ 2.13
COL9A3-203ENST00000462700 KDM5AP29375 1690 aaKnown RBP28.35■■■□□ 2.13
COL9A3-203ENST00000462700 MED14O60244 1454 aa28.34■■■□□ 2.13
COL9A3-203ENST00000462700 STAG3Q9UJ98 1225 aa28.34■■■□□ 2.13
COL9A3-203ENST00000462700 ADGRB3O60242 1522 aa28.33■■■□□ 2.13
COL9A3-203ENST00000462700 NPHP4O75161 1426 aaPredicted RBP28.32■■■□□ 2.12
COL9A3-203ENST00000462700 CERKQ8TCT0 537 aa28.31■■■□□ 2.12
COL9A3-203ENST00000462700 LTBP4Q8N2S1 1624 aa28.3■■■□□ 2.12
COL9A3-203ENST00000462700 TMEM2Q9UHN6 1383 aa28.3■■■□□ 2.12
COL9A3-203ENST00000462700 SCAF11Q99590 1463 aaKnown RBP28.29■■■□□ 2.12
COL9A3-203ENST00000462700 TRIM52Q96A61 297 aa28.28■■■□□ 2.12
COL9A3-203ENST00000462700 ZNF335Q9H4Z2 1342 aaPredicted RBP28.27■■■□□ 2.12
COL9A3-203ENST00000462700 LTKP29376 864 aa28.26■■■□□ 2.11
COL9A3-203ENST00000462700 ILDR1Q86SU0 546 aaPredicted RBP28.26■■■□□ 2.11
COL9A3-203ENST00000462700 IQGAP1P46940 1657 aa28.26■■■□□ 2.11
COL9A3-203ENST00000462700 TXNDC2Q86VQ3 553 aa28.25■■■□□ 2.11
COL9A3-203ENST00000462700 EID1Q9Y6B2 187 aa28.24■■■□□ 2.11
COL9A3-203ENST00000462700 FBXO41Q8TF61 875 aa28.22■■■□□ 2.11
COL9A3-203ENST00000462700 TMEM131LA2VDJ0 1609 aa28.21■■■□□ 2.11
COL9A3-203ENST00000462700 SPHKAPQ2M3C7 1700 aa28.21■■■□□ 2.11
COL9A3-203ENST00000462700 SETD5Q9C0A6 1442 aa28.18■■■□□ 2.1
COL9A3-203ENST00000462700 SLC4A1APQ9BWU0 796 aaKnown RBP28.18■■■□□ 2.1
COL9A3-203ENST00000462700 CHGAP10645 457 aaKnown RBP28.16■■■□□ 2.1
COL9A3-203ENST00000462700 TRPM2O94759 1503 aa28.16■■■□□ 2.1
COL9A3-203ENST00000462700 ZFYVE9O95405 1425 aa28.16■■■□□ 2.1
COL9A3-203ENST00000462700 MYO5BQ9ULV0 1848 aa28.14■■■□□ 2.1
COL9A3-203ENST00000462700 IQSEC2Q5JU85 1478 aa28.14■■■□□ 2.09
COL9A3-203ENST00000462700 RIMS2Q9UQ26 1411 aa28.13■■■□□ 2.09
COL9A3-203ENST00000462700 CPS1P31327 1500 aa28.11■■■□□ 2.09
COL9A3-203ENST00000462700 ACIN1Q9UKV3 1341 aaKnown RBP28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms