RNA–Protein interactions for RNA: ENST00000462267.1

APP-211, Transcript of amyloid beta precursor protein, humanhuman

TSL 2

Gene APP, Length 667 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-211ENST00000462267 ADGBQ8N7X0 1667 aa25.03■■□□□ 1.6
APP-211ENST00000462267 CCNB3Q8WWL7 1395 aa25.02■■□□□ 1.6
APP-211ENST00000462267 THEMISQ8N1K5 641 aaPredicted RBP25.01■■□□□ 1.59
APP-211ENST00000462267 FBXO31Q5XUX0 539 aaPredicted RBP25■■□□□ 1.59
APP-211ENST00000462267 VWDEQ8N2E2 1590 aa25■■□□□ 1.59
APP-211ENST00000462267 ALKQ9UM73 1620 aa24.98■■□□□ 1.59
APP-211ENST00000462267 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.98■■□□□ 1.59
APP-211ENST00000462267 PZPP20742 1482 aa24.97■■□□□ 1.59
APP-211ENST00000462267 RTEL1-TNFRSF6BF6WH68 1400 aa24.97■■□□□ 1.59
APP-211ENST00000462267 DHX29Q7Z478 1369 aaKnown RBP24.97■■□□□ 1.59
APP-211ENST00000462267 MED14O60244 1454 aa24.96■■□□□ 1.59
APP-211ENST00000462267 NPHP4O75161 1426 aaPredicted RBP24.96■■□□□ 1.59
APP-211ENST00000462267 FAM135AQ9P2D6 1515 aa24.94■■□□□ 1.58
APP-211ENST00000462267 NLRP1Q9C000 1473 aa24.93■■□□□ 1.58
APP-211ENST00000462267 MBD5Q9P267 1494 aa24.92■■□□□ 1.58
APP-211ENST00000462267 KIF3BO15066 747 aa24.92■■□□□ 1.58
APP-211ENST00000462267 DEPDC5O75140 1603 aa24.92■■□□□ 1.58
APP-211ENST00000462267 MIA2Q96PC5 1412 aa24.92■■□□□ 1.58
APP-211ENST00000462267 KDM5DQ9BY66 1539 aa24.91■■□□□ 1.58
APP-211ENST00000462267 ZNF644Q9H582 1327 aaPredicted RBP24.9■■□□□ 1.58
APP-211ENST00000462267 WASHC2CQ9Y4E1 1318 aa24.9■■□□□ 1.58
APP-211ENST00000462267 UGGT1Q9NYU2 1555 aa24.89■■□□□ 1.58
APP-211ENST00000462267 MTUS2Q5JR59 1369 aa24.88■■□□□ 1.57
APP-211ENST00000462267 LRRC7Q96NW7 1537 aa24.87■■□□□ 1.57
APP-211ENST00000462267 SENP3Q9H4L4 574 aaPredicted RBP24.87■■□□□ 1.57
APP-211ENST00000462267 RGS17Q9UGC6 210 aaPredicted RBP24.85■■□□□ 1.57
APP-211ENST00000462267 IQGAP1P46940 1657 aa24.84■■□□□ 1.57
APP-211ENST00000462267 RNF17Q9BXT8 1623 aaKnown RBP24.83■■□□□ 1.57
APP-211ENST00000462267 SYNMO15061 1565 aa24.81■■□□□ 1.56
APP-211ENST00000462267 TIAM1Q13009 1591 aa24.8■■□□□ 1.56
APP-211ENST00000462267 RSPH4AQ5TD94 716 aa24.79■■□□□ 1.56
APP-211ENST00000462267 STRCP1A6NGW2 1772 aa24.79■■□□□ 1.56
APP-211ENST00000462267 CCDC141Q6ZP82 1450 aa24.77■■□□□ 1.56
APP-211ENST00000462267 CHIC1Q5VXU3 224 aa24.73■■□□□ 1.55
APP-211ENST00000462267 CEP162Q5TB80 1403 aa24.72■■□□□ 1.55
APP-211ENST00000462267 EHBP1L1Q8N3D4 1523 aa24.71■■□□□ 1.55
APP-211ENST00000462267 POTEAQ6S8J7 498 aa24.69■■□□□ 1.54
APP-211ENST00000462267 FAM135BQ49AJ0 1406 aa24.68■■□□□ 1.54
APP-211ENST00000462267 ZC3H13Q5T200 1668 aaKnown RBP24.67■■□□□ 1.54
APP-211ENST00000462267 ERVK-7P63135 1459 aa24.66■■□□□ 1.54
APP-211ENST00000462267 SCAF11Q99590 1463 aaKnown RBP24.66■■□□□ 1.54
APP-211ENST00000462267 TSPY4P0CV99 314 aa24.66■■□□□ 1.54
APP-211ENST00000462267 TSPY10P0CW01 314 aa24.66■■□□□ 1.54
APP-211ENST00000462267 CAMSAP2Q08AD1 1489 aa24.65■■□□□ 1.54
APP-211ENST00000462267 ABCC3O15438 1527 aa24.65■■□□□ 1.54
APP-211ENST00000462267 TXNDC2Q86VQ3 553 aa24.62■■□□□ 1.53
APP-211ENST00000462267 LTKP29376 864 aa24.61■■□□□ 1.53
APP-211ENST00000462267 ARHGEF5Q12774 1597 aa24.59■■□□□ 1.53
APP-211ENST00000462267 NCOA2Q15596 1464 aa24.59■■□□□ 1.53
APP-211ENST00000462267 ARHGAP23Q9P227 1491 aa24.59■■□□□ 1.53
APP-211ENST00000462267 UBR1Q8IWV7 1749 aa24.59■■□□□ 1.53
APP-211ENST00000462267 SLIT1O75093 1534 aa24.58■■□□□ 1.53
APP-211ENST00000462267 XIRP1Q702N8 1843 aaKnown RBP24.57■■□□□ 1.52
APP-211ENST00000462267 EID1Q9Y6B2 187 aa24.57■■□□□ 1.52
APP-211ENST00000462267 TMEM94Q12767 1356 aa24.53■■□□□ 1.52
APP-211ENST00000462267 EIF2AK4Q9P2K8 1649 aaKnown RBP24.52■■□□□ 1.52
APP-211ENST00000462267 KCNA6P17658 529 aa24.49■■□□□ 1.51
APP-211ENST00000462267 MAST1Q9Y2H9 1570 aa24.49■■□□□ 1.51
APP-211ENST00000462267 MROH1Q8NDA8 1641 aa24.49■■□□□ 1.51
APP-211ENST00000462267 ROBO1Q9Y6N7 1651 aa24.47■■□□□ 1.51
APP-211ENST00000462267 LRRC9Q6ZRR7 1453 aa24.47■■□□□ 1.51
APP-211ENST00000462267 ARHGAP31Q2M1Z3 1444 aa24.47■■□□□ 1.51
APP-211ENST00000462267 TMEM2Q9UHN6 1383 aa24.47■■□□□ 1.51
APP-211ENST00000462267 CFAP65Q6ZU64 1925 aaKnown RBP24.46■■□□□ 1.51
APP-211ENST00000462267 PROSER2Q86WR7 435 aaPredicted RBP24.45■■□□□ 1.5
APP-211ENST00000462267 CEP152O94986 1710 aa24.44■■□□□ 1.5
APP-211ENST00000462267 JCADQ9P266 1359 aa24.42■■□□□ 1.5
APP-211ENST00000462267 MAP3K1Q13233 1512 aa24.42■■□□□ 1.5
APP-211ENST00000462267 SETD1AO15047 1707 aaKnown RBP24.42■■□□□ 1.5
APP-211ENST00000462267 STAG3Q9UJ98 1225 aa24.42■■□□□ 1.5
APP-211ENST00000462267 PRDM15P57071 1507 aaPredicted RBP24.39■■□□□ 1.49
APP-211ENST00000462267 DUOX2Q9NRD8 1548 aa24.39■■□□□ 1.49
APP-211ENST00000462267 RBM33Q96EV2 1170 aaKnown RBP24.38■■□□□ 1.49
APP-211ENST00000462267 SLAIN2Q9P270 581 aa24.38■■□□□ 1.49
APP-211ENST00000462267 PIK3C2BO00750 1634 aa24.38■■□□□ 1.49
APP-211ENST00000462267 UPF1Q92900 1129 aaKnown RBP eCLIP24.37■■□□□ 1.49
APP-211ENST00000462267 SLC26A8Q96RN1 970 aa24.37■■□□□ 1.49
APP-211ENST00000462267 MSH6P52701 1360 aa24.37■■□□□ 1.49
APP-211ENST00000462267 NKTRP30414 1462 aaKnown RBP24.37■■□□□ 1.49
APP-211ENST00000462267 EFCAB6Q5THR3 1501 aa24.35■■□□□ 1.49
APP-211ENST00000462267 TET3O43151 1660 aa24.35■■□□□ 1.49
APP-211ENST00000462267 KDM5AP29375 1690 aaKnown RBP24.34■■□□□ 1.49
APP-211ENST00000462267 PHLPP1O60346 1717 aa24.33■■□□□ 1.49
APP-211ENST00000462267 ZNF772Q68DY9 489 aaPredicted RBP24.33■■□□□ 1.49
APP-211ENST00000462267 IDI1Q13907 227 aa24.32■■□□□ 1.48
APP-211ENST00000462267 NWD1Q149M9 1564 aa24.31■■□□□ 1.48
APP-211ENST00000462267 SPATA31A6Q5VVP1 1343 aa24.31■■□□□ 1.48
APP-211ENST00000462267 MYOM3Q5VTT5 1437 aa24.3■■□□□ 1.48
APP-211ENST00000462267 ERBINQ96RT1 1412 aa24.3■■□□□ 1.48
APP-211ENST00000462267 KIF15Q9NS87 1388 aa24.29■■□□□ 1.48
APP-211ENST00000462267 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.29■■□□□ 1.481e-7■■□□□ 14
APP-211ENST00000462267 KANK1Q14678 1352 aa24.29■■□□□ 1.48
APP-211ENST00000462267 FGD6Q6ZV73 1430 aa24.27■■□□□ 1.48
APP-211ENST00000462267 MEX3CQ5U5Q3 659 aaKnown RBP24.27■■□□□ 1.48
APP-211ENST00000462267 TRIM52Q96A61 297 aa24.26■■□□□ 1.47
APP-211ENST00000462267 LRP6O75581 1613 aa24.24■■□□□ 1.47
APP-211ENST00000462267 COL16A1Q07092 1604 aaPredicted RBP24.24■■□□□ 1.47
APP-211ENST00000462267 BCANQ96GW7 911 aa24.24■■□□□ 1.47
APP-211ENST00000462267 RRP7BPQ9NSQ0 103 aa24.24■■□□□ 1.47
APP-211ENST00000462267 LMTK2Q8IWU2 1503 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms