RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 TNRQ92752 1358 aa27.55■■■□□ 2
SF3B4-202ENST00000457312 ATP1B4Q9UN42 357 aaPredicted RBP27.53■■■□□ 2
SF3B4-202ENST00000457312 GGT6Q6P531 493 aa27.52■■■□□ 2
SF3B4-202ENST00000457312 FMN1Q68DA7 1419 aa27.51■■□□□ 1.99
SF3B4-202ENST00000457312 SPAG9O60271 1321 aaKnown RBP27.5■■□□□ 1.99
SF3B4-202ENST00000457312 ZC3H13Q5T200 1668 aaKnown RBP27.48■■□□□ 1.99
SF3B4-202ENST00000457312 ADGBQ8N7X0 1667 aa27.48■■□□□ 1.99
SF3B4-202ENST00000457312 UGGT1Q9NYU2 1555 aa27.47■■□□□ 1.99
SF3B4-202ENST00000457312 PZPP20742 1482 aa27.45■■□□□ 1.99
SF3B4-202ENST00000457312 FAM135BQ49AJ0 1406 aa27.45■■□□□ 1.98
SF3B4-202ENST00000457312 FAM135AQ9P2D6 1515 aa27.43■■□□□ 1.98
SF3B4-202ENST00000457312 FBXO31Q5XUX0 539 aaPredicted RBP27.43■■□□□ 1.98
SF3B4-202ENST00000457312 NLRP1Q9C000 1473 aa27.42■■□□□ 1.98
SF3B4-202ENST00000457312 ROBO1Q9Y6N7 1651 aa27.41■■□□□ 1.98
SF3B4-202ENST00000457312 THEMISQ8N1K5 641 aaPredicted RBP27.4■■□□□ 1.98
SF3B4-202ENST00000457312 KDM5DQ9BY66 1539 aa27.36■■□□□ 1.97
SF3B4-202ENST00000457312 ARHGAP35Q9NRY4 1499 aa27.33■■□□□ 1.97
SF3B4-202ENST00000457312 HNRNPMP52272 730 aaKnown RBP eCLIP27.33■■□□□ 1.97
SF3B4-202ENST00000457312 MIA2Q96PC5 1412 aa27.33■■□□□ 1.96
SF3B4-202ENST00000457312 ZNF777Q9ULD5 760 aaPredicted RBP27.32■■□□□ 1.96
SF3B4-202ENST00000457312 KIAA1107Q9UPP5 1409 aa27.3■■□□□ 1.96
SF3B4-202ENST00000457312 TRIM52Q96A61 297 aa27.26■■□□□ 1.95
SF3B4-202ENST00000457312 PHLPP1O60346 1717 aa27.26■■□□□ 1.95
SF3B4-202ENST00000457312 GPATCH8Q9UKJ3 1502 aaKnown RBP27.26■■□□□ 1.95
SF3B4-202ENST00000457312 PLEKHH2Q8IVE3 1493 aa27.25■■□□□ 1.95
SF3B4-202ENST00000457312 EEA1Q15075 1411 aa27.25■■□□□ 1.95
SF3B4-202ENST00000457312 CCDC18Q5T9S5 1454 aa27.23■■□□□ 1.95
SF3B4-202ENST00000457312 LRP6O75581 1613 aa27.23■■□□□ 1.95
SF3B4-202ENST00000457312 MAP3K1Q13233 1512 aa27.2■■□□□ 1.94
SF3B4-202ENST00000457312 JCADQ9P266 1359 aa27.2■■□□□ 1.94
SF3B4-202ENST00000457312 LRRC9Q6ZRR7 1453 aa27.19■■□□□ 1.94
SF3B4-202ENST00000457312 SCAF11Q99590 1463 aaKnown RBP27.19■■□□□ 1.94
SF3B4-202ENST00000457312 UBR1Q8IWV7 1749 aa27.19■■□□□ 1.94
SF3B4-202ENST00000457312 DHX29Q7Z478 1369 aaKnown RBP27.16■■□□□ 1.94
SF3B4-202ENST00000457312 CDK12Q9NYV4 1490 aaPredicted RBP27.16■■□□□ 1.94
SF3B4-202ENST00000457312 COL16A1Q07092 1604 aaPredicted RBP27.16■■□□□ 1.94
SF3B4-202ENST00000457312 TMEM94Q12767 1356 aa27.13■■□□□ 1.93
SF3B4-202ENST00000457312 ZNF772Q68DY9 489 aaPredicted RBP27.13■■□□□ 1.93
SF3B4-202ENST00000457312 WASHC2CQ9Y4E1 1318 aa27.1■■□□□ 1.93
SF3B4-202ENST00000457312 ARHGAP23Q9P227 1491 aa27.09■■□□□ 1.93
SF3B4-202ENST00000457312 KIF3BO15066 747 aa27.09■■□□□ 1.93
SF3B4-202ENST00000457312 RTEL1-TNFRSF6BF6WH68 1400 aa27.08■■□□□ 1.93
SF3B4-202ENST00000457312 CASKIN1Q8WXD9 1431 aa27.07■■□□□ 1.92
SF3B4-202ENST00000457312 NCOA2Q15596 1464 aa27.07■■□□□ 1.92
SF3B4-202ENST00000457312 SLIT1O75093 1534 aa27.07■■□□□ 1.92
SF3B4-202ENST00000457312 ERVK-7P63135 1459 aa27.06■■□□□ 1.92
SF3B4-202ENST00000457312 TIAM1Q13009 1591 aa27.05■■□□□ 1.92
SF3B4-202ENST00000457312 MBD5Q9P267 1494 aa27.05■■□□□ 1.92
SF3B4-202ENST00000457312 RXRBP28702 533 aa27.04■■□□□ 1.92
SF3B4-202ENST00000457312 CFDP1Q9UEE9 299 aaPredicted RBP27.04■■□□□ 1.92
SF3B4-202ENST00000457312 LTKP29376 864 aa27.03■■□□□ 1.92
SF3B4-202ENST00000457312 SHPRHQ149N8 1683 aa27.03■■□□□ 1.92
SF3B4-202ENST00000457312 SPATA31A6Q5VVP1 1343 aa27.02■■□□□ 1.92
SF3B4-202ENST00000457312 MEX3CQ5U5Q3 659 aaKnown RBP27.02■■□□□ 1.92
SF3B4-202ENST00000457312 FGD6Q6ZV73 1430 aa27.01■■□□□ 1.91
SF3B4-202ENST00000457312 SETBP1Q9Y6X0 1596 aa27.01■■□□□ 1.91
SF3B4-202ENST00000457312 ABCC3O15438 1527 aa27■■□□□ 1.91
SF3B4-202ENST00000457312 PRDM15P57071 1507 aaPredicted RBP26.99■■□□□ 1.91
SF3B4-202ENST00000457312 CFAP65Q6ZU64 1925 aaKnown RBP26.98■■□□□ 1.91
SF3B4-202ENST00000457312 RGS12O14924 1447 aa26.98■■□□□ 1.91
SF3B4-202ENST00000457312 NWD1Q149M9 1564 aa26.96■■□□□ 1.91
SF3B4-202ENST00000457312 CCNB3Q8WWL7 1395 aa26.96■■□□□ 1.91
SF3B4-202ENST00000457312 TXNDC2Q86VQ3 553 aa26.95■■□□□ 1.9
SF3B4-202ENST00000457312 RBM33Q96EV2 1170 aaKnown RBP26.94■■□□□ 1.9
SF3B4-202ENST00000457312 NKTRP30414 1462 aaKnown RBP26.93■■□□□ 1.9
SF3B4-202ENST00000457312 ZNF644Q9H582 1327 aaPredicted RBP26.93■■□□□ 1.9
SF3B4-202ENST00000457312 FYCO1Q9BQS8 1478 aa26.92■■□□□ 1.9
SF3B4-202ENST00000457312 KDM5AP29375 1690 aaKnown RBP26.9■■□□□ 1.9
SF3B4-202ENST00000457312 MSH6P52701 1360 aa26.9■■□□□ 1.9
SF3B4-202ENST00000457312 SLAIN2Q9P270 581 aa26.9■■□□□ 1.9
SF3B4-202ENST00000457312 UBTFP17480 764 aaKnown RBP26.89■■□□□ 1.9
SF3B4-202ENST00000457312 KCNA6P17658 529 aa26.89■■□□□ 1.9
SF3B4-202ENST00000457312 PROSER2Q86WR7 435 aaPredicted RBP26.89■■□□□ 1.9
SF3B4-202ENST00000457312 AHDC1Q5TGY3 1603 aaPredicted RBP26.89■■□□□ 1.9
SF3B4-202ENST00000457312 CAMSAP2Q08AD1 1489 aa26.88■■□□□ 1.89
SF3B4-202ENST00000457312 CEP152O94986 1710 aa26.88■■□□□ 1.89
SF3B4-202ENST00000457312 EHMT2Q96KQ7 1210 aa26.86■■□□□ 1.89
SF3B4-202ENST00000457312 CCDC141Q6ZP82 1450 aa26.86■■□□□ 1.89
SF3B4-202ENST00000457312 ZRANB1Q9UGI0 708 aa26.85■■□□□ 1.89
SF3B4-202ENST00000457312 TET3O43151 1660 aa26.85■■□□□ 1.89
SF3B4-202ENST00000457312 MROH1Q8NDA8 1641 aa26.84■■□□□ 1.89
SF3B4-202ENST00000457312 CHIC1Q5VXU3 224 aa26.84■■□□□ 1.89
SF3B4-202ENST00000457312 DIP2AQ14689 1571 aa26.84■■□□□ 1.89
SF3B4-202ENST00000457312 PIK3C2BO00750 1634 aa26.83■■□□□ 1.89
SF3B4-202ENST00000457312 EID1Q9Y6B2 187 aa26.83■■□□□ 1.89
SF3B4-202ENST00000457312 AFF2P51816 1311 aa26.82■■□□□ 1.88
SF3B4-202ENST00000457312 TMEM2Q9UHN6 1383 aa26.8■■□□□ 1.88
SF3B4-202ENST00000457312 NUTM2BA6NNL0 878 aaPredicted RBP26.77■■□□□ 1.88
SF3B4-202ENST00000457312 NUTM2EB1AL46 878 aaPredicted RBP26.77■■□□□ 1.88
SF3B4-202ENST00000457312 NUTM2DQ5VT03 806 aaPredicted RBP26.77■■□□□ 1.88
SF3B4-202ENST00000457312 NUTM2AQ8IVF1 878 aaPredicted RBP26.77■■□□□ 1.88
SF3B4-202ENST00000457312 ATAD2Q6PL18 1390 aa26.76■■□□□ 1.87
SF3B4-202ENST00000457312 EP400Q96L91 3159 aa26.76■■□□□ 1.87
SF3B4-202ENST00000457312 EIF2AK4Q9P2K8 1649 aaKnown RBP26.76■■□□□ 1.87
SF3B4-202ENST00000457312 FOXD1Q16676 465 aa26.75■■□□□ 1.87
SF3B4-202ENST00000457312 SLC26A8Q96RN1 970 aa26.73■■□□□ 1.87
SF3B4-202ENST00000457312 RBM6P78332 1123 aaKnown RBP26.72■■□□□ 1.87
SF3B4-202ENST00000457312 LRP5O75197 1615 aa26.72■■□□□ 1.87
SF3B4-202ENST00000457312 CHD2O14647 1828 aaKnown RBP26.71■■□□□ 1.87
SF3B4-202ENST00000457312 EFCAB6Q5THR3 1501 aa26.7■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms