RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 EIF2AK4Q9P2K8 1649 aaKnown RBP26.83■■□□□ 1.89
USP39-208ENST00000455732 DAPK1P53355 1430 aa26.83■■□□□ 1.89
USP39-208ENST00000455732 RNF17Q9BXT8 1623 aaKnown RBP26.83■■□□□ 1.88
USP39-208ENST00000455732 PTPRKQ15262 1439 aa26.82■■□□□ 1.88
USP39-208ENST00000455732 STRCQ7RTU9 1775 aa26.81■■□□□ 1.88
USP39-208ENST00000455732 KDM5DQ9BY66 1539 aa26.8■■□□□ 1.88
USP39-208ENST00000455732 DUOX2Q9NRD8 1548 aa26.79■■□□□ 1.88
USP39-208ENST00000455732 MYO3AQ8NEV4 1616 aa26.76■■□□□ 1.87
USP39-208ENST00000455732 ZNF142P52746 1687 aaPredicted RBP26.76■■□□□ 1.87
USP39-208ENST00000455732 MROH1Q8NDA8 1641 aa26.76■■□□□ 1.87
USP39-208ENST00000455732 KIF15Q9NS87 1388 aa26.74■■□□□ 1.87
USP39-208ENST00000455732 ZC3H13Q5T200 1668 aaKnown RBP26.73■■□□□ 1.87
USP39-208ENST00000455732 WASHC2CQ9Y4E1 1318 aa26.73■■□□□ 1.87
USP39-208ENST00000455732 PZPP20742 1482 aa26.72■■□□□ 1.87
USP39-208ENST00000455732 FAM50AQ14320 339 aaKnown RBP26.71■■□□□ 1.87
USP39-208ENST00000455732 ABCC3O15438 1527 aa26.7■■□□□ 1.86
USP39-208ENST00000455732 ADGRL2O95490 1459 aa26.69■■□□□ 1.86
USP39-208ENST00000455732 ERBINQ96RT1 1412 aa26.69■■□□□ 1.86
USP39-208ENST00000455732 RRP7BPQ9NSQ0 103 aa26.69■■□□□ 1.86
USP39-208ENST00000455732 CEP170BQ9Y4F5 1589 aaPredicted RBP26.69■■□□□ 1.86
USP39-208ENST00000455732 PPARGC1BQ86YN6 1023 aaKnown RBP26.68■■□□□ 1.86
USP39-208ENST00000455732 ANKRD30AQ9BXX3 1397 aa26.68■■□□□ 1.86
USP39-208ENST00000455732 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.68■■□□□ 1.861e-6■□□□□ 11
USP39-208ENST00000455732 CEP152O94986 1710 aa26.68■■□□□ 1.86
USP39-208ENST00000455732 NCOA1Q15788 1441 aa26.66■■□□□ 1.86
USP39-208ENST00000455732 CAMSAP1Q5T5Y3 1602 aa26.66■■□□□ 1.86
USP39-208ENST00000455732 FBXO31Q5XUX0 539 aaPredicted RBP26.66■■□□□ 1.86
USP39-208ENST00000455732 DEPDC5O75140 1603 aa26.65■■□□□ 1.86
USP39-208ENST00000455732 CHIC2Q9UKJ5 165 aa26.65■■□□□ 1.86
USP39-208ENST00000455732 PRDM15P57071 1507 aaPredicted RBP26.65■■□□□ 1.86
USP39-208ENST00000455732 CERKQ8TCT0 537 aa26.62■■□□□ 1.85
USP39-208ENST00000455732 DMRT2Q9Y5R5 561 aa26.62■■□□□ 1.85
USP39-208ENST00000455732 A2ML1A8K2U0 1454 aa26.62■■□□□ 1.85
USP39-208ENST00000455732 CFAP65Q6ZU64 1925 aaKnown RBP26.61■■□□□ 1.85
USP39-208ENST00000455732 TNRQ92752 1358 aa26.61■■□□□ 1.85
USP39-208ENST00000455732 PTPRTO14522 1441 aa26.6■■□□□ 1.85
USP39-208ENST00000455732 RRBP1Q9P2E9 1410 aaKnown RBP26.6■■□□□ 1.85
USP39-208ENST00000455732 PLA2R1Q13018 1463 aa26.59■■□□□ 1.85
USP39-208ENST00000455732 SPATA31D1Q6ZQQ2 1576 aa26.58■■□□□ 1.85
USP39-208ENST00000455732 ROCK1Q13464 1354 aa26.56■■□□□ 1.84
USP39-208ENST00000455732 VWDEQ8N2E2 1590 aa26.54■■□□□ 1.84
USP39-208ENST00000455732 ERVK-7P63135 1459 aa26.53■■□□□ 1.84
USP39-208ENST00000455732 NLRP1Q9C000 1473 aa26.53■■□□□ 1.84
USP39-208ENST00000455732 ARHGAP31Q2M1Z3 1444 aa26.52■■□□□ 1.84
USP39-208ENST00000455732 ANKRD50Q9ULJ7 1429 aa26.5■■□□□ 1.83
USP39-208ENST00000455732 NCKAP5LQ9HCH0 1330 aa26.49■■□□□ 1.83
USP39-208ENST00000455732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.49■■□□□ 1.831e-7■□□□□ 9.9
USP39-208ENST00000455732 LMTK2Q8IWU2 1503 aa26.49■■□□□ 1.83
USP39-208ENST00000455732 POLR1AO95602 1720 aaPredicted RBP26.48■■□□□ 1.83
USP39-208ENST00000455732 KANK1Q14678 1352 aa26.48■■□□□ 1.83
USP39-208ENST00000455732 PKD2Q13563 968 aa26.48■■□□□ 1.83
USP39-208ENST00000455732 UGGT1Q9NYU2 1555 aa26.47■■□□□ 1.83
USP39-208ENST00000455732 LTBP4Q8N2S1 1624 aa26.42■■□□□ 1.82
USP39-208ENST00000455732 NEURL4Q96JN8 1562 aa26.41■■□□□ 1.82
USP39-208ENST00000455732 UBR1Q8IWV7 1749 aa26.41■■□□□ 1.82
USP39-208ENST00000455732 EFCAB6Q5THR3 1501 aa26.4■■□□□ 1.82
USP39-208ENST00000455732 ITGAEP38570 1179 aa26.4■■□□□ 1.82
USP39-208ENST00000455732 THEMISQ8N1K5 641 aaPredicted RBP26.4■■□□□ 1.82
USP39-208ENST00000455732 UNC13BO14795 1591 aa26.4■■□□□ 1.82
USP39-208ENST00000455732 TET3O43151 1660 aa26.35■■□□□ 1.81
USP39-208ENST00000455732 SYNMO15061 1565 aa26.33■■□□□ 1.81
USP39-208ENST00000455732 PIK3C2BO00750 1634 aa26.33■■□□□ 1.81
USP39-208ENST00000455732 ANKLE2Q86XL3 938 aa26.33■■□□□ 1.81
USP39-208ENST00000455732 GCC2Q8IWJ2 1684 aa26.33■■□□□ 1.81
USP39-208ENST00000455732 NOS1P29475 1434 aa26.32■■□□□ 1.8
USP39-208ENST00000455732 MED14O60244 1454 aa26.32■■□□□ 1.8
USP39-208ENST00000455732 IQSEC2Q5JU85 1478 aa26.32■■□□□ 1.8
USP39-208ENST00000455732 KDM5AP29375 1690 aaKnown RBP26.31■■□□□ 1.8
USP39-208ENST00000455732 RPRD2Q5VT52 1461 aaKnown RBP26.3■■□□□ 1.8
USP39-208ENST00000455732 ZNF335Q9H4Z2 1342 aaPredicted RBP26.3■■□□□ 1.8
USP39-208ENST00000455732 IQGAP3Q86VI3 1631 aa26.29■■□□□ 1.8
USP39-208ENST00000455732 IQGAP1P46940 1657 aa26.28■■□□□ 1.8
USP39-208ENST00000455732 NAIPQ13075 1403 aa26.27■■□□□ 1.8
USP39-208ENST00000455732 ARHGAP23Q9P227 1491 aa26.27■■□□□ 1.8
USP39-208ENST00000455732 SLIT1O75093 1534 aa26.27■■□□□ 1.8
USP39-208ENST00000455732 NPHP4O75161 1426 aaPredicted RBP26.26■■□□□ 1.79
USP39-208ENST00000455732 E9PCH4 1651 aa26.25■■□□□ 1.79
USP39-208ENST00000455732 HFM1A2PYH4 1435 aa26.25■■□□□ 1.79
USP39-208ENST00000455732 IDI1Q13907 227 aa26.24■■□□□ 1.79
USP39-208ENST00000455732 SCAF11Q99590 1463 aaKnown RBP26.21■■□□□ 1.79
USP39-208ENST00000455732 NUP155O75694 1391 aa26.2■■□□□ 1.78
USP39-208ENST00000455732 SLC52A1Q9NWF4 448 aa26.19■■□□□ 1.78
USP39-208ENST00000455732 ADGRB3O60242 1522 aa26.19■■□□□ 1.78
USP39-208ENST00000455732 MYO5BQ9ULV0 1848 aa26.18■■□□□ 1.78
USP39-208ENST00000455732 LTKP29376 864 aa26.18■■□□□ 1.78
USP39-208ENST00000455732 TMEM2Q9UHN6 1383 aa26.18■■□□□ 1.78
USP39-208ENST00000455732 TXNDC2Q86VQ3 553 aa26.15■■□□□ 1.78
USP39-208ENST00000455732 STAG3Q9UJ98 1225 aa26.15■■□□□ 1.78
USP39-208ENST00000455732 CPS1P31327 1500 aa26.14■■□□□ 1.78
USP39-208ENST00000455732 STRCP1A6NGW2 1772 aa26.14■■□□□ 1.78
USP39-208ENST00000455732 DISP3Q9P2K9 1392 aa26.12■■□□□ 1.77
USP39-208ENST00000455732 TMEM131LA2VDJ0 1609 aa26.12■■□□□ 1.77
USP39-208ENST00000455732 EID1Q9Y6B2 187 aa26.11■■□□□ 1.77
USP39-208ENST00000455732 SPHKAPQ2M3C7 1700 aa26.08■■□□□ 1.76
USP39-208ENST00000455732 UBAP1LF5GYI3 381 aa26.06■■□□□ 1.76
USP39-208ENST00000455732 ZFYVE9O95405 1425 aa26.04■■□□□ 1.76
USP39-208ENST00000455732 LRRC7Q96NW7 1537 aa25.98■■□□□ 1.75
USP39-208ENST00000455732 RIMS2Q9UQ26 1411 aa25.98■■□□□ 1.75
USP39-208ENST00000455732 XIRP1Q702N8 1843 aaKnown RBP25.96■■□□□ 1.75
USP39-208ENST00000455732 TRIM52Q96A61 297 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms