RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 FBXO31Q5XUX0 539 aaPredicted RBP25.62■■□□□ 1.69
NCKIPSD-208ENST00000454134 FBXO41Q8TF61 875 aa25.62■■□□□ 1.69
NCKIPSD-208ENST00000454134 CROCC2H7BZ55 1655 aa25.61■■□□□ 1.69
NCKIPSD-208ENST00000454134 TCOF1Q13428 1488 aaKnown RBP25.61■■□□□ 1.69
NCKIPSD-208ENST00000454134 CAMSAP1Q5T5Y3 1602 aa25.61■■□□□ 1.69
NCKIPSD-208ENST00000454134 NCOA1Q15788 1441 aa25.61■■□□□ 1.69
NCKIPSD-208ENST00000454134 DAPK1P53355 1430 aa25.6■■□□□ 1.69
NCKIPSD-208ENST00000454134 RNF17Q9BXT8 1623 aaKnown RBP25.59■■□□□ 1.69
NCKIPSD-208ENST00000454134 FAM135AQ9P2D6 1515 aa25.59■■□□□ 1.69
NCKIPSD-208ENST00000454134 CEP170BQ9Y4F5 1589 aaPredicted RBP25.59■■□□□ 1.69
NCKIPSD-208ENST00000454134 SHANK2Q9UPX8 1470 aa25.59■■□□□ 1.69
NCKIPSD-208ENST00000454134 ZNF142P52746 1687 aaPredicted RBP25.58■■□□□ 1.69
NCKIPSD-208ENST00000454134 RRP7BPQ9NSQ0 103 aa25.58■■□□□ 1.69
NCKIPSD-208ENST00000454134 DNMT1P26358 1616 aaKnown RBP25.58■■□□□ 1.69
NCKIPSD-208ENST00000454134 PZPP20742 1482 aa25.58■■□□□ 1.69
NCKIPSD-208ENST00000454134 DUOX2Q9NRD8 1548 aa25.58■■□□□ 1.68
NCKIPSD-208ENST00000454134 KIF15Q9NS87 1388 aa25.57■■□□□ 1.68
NCKIPSD-208ENST00000454134 EIF2AK4Q9P2K8 1649 aaKnown RBP25.57■■□□□ 1.68
NCKIPSD-208ENST00000454134 PTPRTO14522 1441 aa25.56■■□□□ 1.68
NCKIPSD-208ENST00000454134 CERKQ8TCT0 537 aa25.56■■□□□ 1.68
NCKIPSD-208ENST00000454134 NCKAP5LQ9HCH0 1330 aa25.55■■□□□ 1.68
NCKIPSD-208ENST00000454134 TNRQ92752 1358 aa25.55■■□□□ 1.68
NCKIPSD-208ENST00000454134 CHIC2Q9UKJ5 165 aa25.54■■□□□ 1.68
NCKIPSD-208ENST00000454134 MROH1Q8NDA8 1641 aa25.54■■□□□ 1.68
NCKIPSD-208ENST00000454134 ABCC3O15438 1527 aa25.53■■□□□ 1.68
NCKIPSD-208ENST00000454134 FAM50AQ14320 339 aaKnown RBP25.52■■□□□ 1.68
NCKIPSD-208ENST00000454134 A2ML1A8K2U0 1454 aa25.52■■□□□ 1.68
NCKIPSD-208ENST00000454134 ZC3H13Q5T200 1668 aaKnown RBP25.49■■□□□ 1.67
NCKIPSD-208ENST00000454134 PLA2R1Q13018 1463 aa25.48■■□□□ 1.67
NCKIPSD-208ENST00000454134 ERBINQ96RT1 1412 aa25.48■■□□□ 1.67
NCKIPSD-208ENST00000454134 CEP152O94986 1710 aa25.48■■□□□ 1.67
NCKIPSD-208ENST00000454134 ANKRD30AQ9BXX3 1397 aa25.47■■□□□ 1.67
NCKIPSD-208ENST00000454134 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.45■■□□□ 1.66
NCKIPSD-208ENST00000454134 PKD2Q13563 968 aa25.44■■□□□ 1.66
NCKIPSD-208ENST00000454134 PPARGC1BQ86YN6 1023 aaKnown RBP25.44■■□□□ 1.66
NCKIPSD-208ENST00000454134 PRDM15P57071 1507 aaPredicted RBP25.42■■□□□ 1.66
NCKIPSD-208ENST00000454134 ERVK-7P63135 1459 aa25.4■■□□□ 1.66
NCKIPSD-208ENST00000454134 NLRP1Q9C000 1473 aa25.4■■□□□ 1.66
NCKIPSD-208ENST00000454134 SPATA31D1Q6ZQQ2 1576 aa25.4■■□□□ 1.66
NCKIPSD-208ENST00000454134 LTBP4Q8N2S1 1624 aa25.39■■□□□ 1.66
NCKIPSD-208ENST00000454134 ADGRL2O95490 1459 aa25.39■■□□□ 1.65
NCKIPSD-208ENST00000454134 CFAP65Q6ZU64 1925 aaKnown RBP25.39■■□□□ 1.65
NCKIPSD-208ENST00000454134 DEPDC5O75140 1603 aa25.38■■□□□ 1.65
NCKIPSD-208ENST00000454134 UGGT1Q9NYU2 1555 aa25.37■■□□□ 1.65
NCKIPSD-208ENST00000454134 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.37■■□□□ 1.65
NCKIPSD-208ENST00000454134 ZNF335Q9H4Z2 1342 aaPredicted RBP25.36■■□□□ 1.65
NCKIPSD-208ENST00000454134 KANK1Q14678 1352 aa25.35■■□□□ 1.65
NCKIPSD-208ENST00000454134 THEMISQ8N1K5 641 aaPredicted RBP25.35■■□□□ 1.65
NCKIPSD-208ENST00000454134 POLR1AO95602 1720 aaPredicted RBP25.34■■□□□ 1.65
NCKIPSD-208ENST00000454134 NEURL4Q96JN8 1562 aa25.32■■□□□ 1.64
NCKIPSD-208ENST00000454134 ARHGAP31Q2M1Z3 1444 aa25.32■■□□□ 1.64
NCKIPSD-208ENST00000454134 ANKLE2Q86XL3 938 aa25.31■■□□□ 1.64
NCKIPSD-208ENST00000454134 ANKRD50Q9ULJ7 1429 aa25.29■■□□□ 1.64
NCKIPSD-208ENST00000454134 VWDEQ8N2E2 1590 aa25.29■■□□□ 1.64
NCKIPSD-208ENST00000454134 ITGAEP38570 1179 aa25.27■■□□□ 1.64
NCKIPSD-208ENST00000454134 LMTK2Q8IWU2 1503 aa25.27■■□□□ 1.64
NCKIPSD-208ENST00000454134 UBR1Q8IWV7 1749 aa25.24■■□□□ 1.63
NCKIPSD-208ENST00000454134 NPHP4O75161 1426 aaPredicted RBP25.22■■□□□ 1.63
NCKIPSD-208ENST00000454134 EFCAB6Q5THR3 1501 aa25.21■■□□□ 1.63
NCKIPSD-208ENST00000454134 MED14O60244 1454 aa25.21■■□□□ 1.63
NCKIPSD-208ENST00000454134 IQSEC2Q5JU85 1478 aa25.21■■□□□ 1.63
NCKIPSD-208ENST00000454134 ROCK1Q13464 1354 aa25.19■■□□□ 1.62
NCKIPSD-208ENST00000454134 PIK3C2BO00750 1634 aa25.19■■□□□ 1.62
NCKIPSD-208ENST00000454134 SYNMO15061 1565 aa25.17■■□□□ 1.62
NCKIPSD-208ENST00000454134 IQGAP1P46940 1657 aa25.17■■□□□ 1.62
NCKIPSD-208ENST00000454134 IDI1Q13907 227 aa25.16■■□□□ 1.62
NCKIPSD-208ENST00000454134 STAG3Q9UJ98 1225 aa25.15■■□□□ 1.62
NCKIPSD-208ENST00000454134 NOS1P29475 1434 aa25.14■■□□□ 1.62
NCKIPSD-208ENST00000454134 LTKP29376 864 aa25.14■■□□□ 1.62
NCKIPSD-208ENST00000454134 SCAF11Q99590 1463 aaKnown RBP25.14■■□□□ 1.61
NCKIPSD-208ENST00000454134 UNC13BO14795 1591 aa25.14■■□□□ 1.61
NCKIPSD-208ENST00000454134 TXNDC2Q86VQ3 553 aa25.13■■□□□ 1.61
NCKIPSD-208ENST00000454134 ARHGAP23Q9P227 1491 aa25.13■■□□□ 1.61
NCKIPSD-208ENST00000454134 SLIT1O75093 1534 aa25.12■■□□□ 1.61
NCKIPSD-208ENST00000454134 TET3O43151 1660 aa25.11■■□□□ 1.61
NCKIPSD-208ENST00000454134 UBAP1LF5GYI3 381 aa25.11■■□□□ 1.61
NCKIPSD-208ENST00000454134 CPS1P31327 1500 aa25.1■■□□□ 1.61
NCKIPSD-208ENST00000454134 RPRD2Q5VT52 1461 aaKnown RBP25.09■■□□□ 1.61
NCKIPSD-208ENST00000454134 TMEM2Q9UHN6 1383 aa25.09■■□□□ 1.61
NCKIPSD-208ENST00000454134 EID1Q9Y6B2 187 aa25.08■■□□□ 1.61
NCKIPSD-208ENST00000454134 RRBP1Q9P2E9 1410 aaKnown RBP25.08■■□□□ 1.61
NCKIPSD-208ENST00000454134 GCC2Q8IWJ2 1684 aa25.07■■□□□ 1.6
NCKIPSD-208ENST00000454134 KDM5AP29375 1690 aaKnown RBP25.06■■□□□ 1.6
NCKIPSD-208ENST00000454134 SLC52A1Q9NWF4 448 aa25.05■■□□□ 1.6
NCKIPSD-208ENST00000454134 NUP155O75694 1391 aa25.05■■□□□ 1.6
NCKIPSD-208ENST00000454134 ADGRB3O60242 1522 aa25.04■■□□□ 1.6
NCKIPSD-208ENST00000454134 IQGAP3Q86VI3 1631 aa25.04■■□□□ 1.6
NCKIPSD-208ENST00000454134 STRCP1A6NGW2 1772 aa25.03■■□□□ 1.6
NCKIPSD-208ENST00000454134 E9PCH4 1651 aa25.03■■□□□ 1.6
NCKIPSD-208ENST00000454134 MYO5BQ9ULV0 1848 aa24.96■■□□□ 1.59
NCKIPSD-208ENST00000454134 LRRC7Q96NW7 1537 aa24.96■■□□□ 1.59
NCKIPSD-208ENST00000454134 SCAF1Q9H7N4 1312 aaKnown RBP24.95■■□□□ 1.58
NCKIPSD-208ENST00000454134 CHGAP10645 457 aaKnown RBP24.95■■□□□ 1.58
NCKIPSD-208ENST00000454134 PIP4K2BP78356 416 aa24.95■■□□□ 1.58
NCKIPSD-208ENST00000454134 SENP3Q9H4L4 574 aaPredicted RBP24.95■■□□□ 1.58
NCKIPSD-208ENST00000454134 TMEM131LA2VDJ0 1609 aa24.94■■□□□ 1.58
NCKIPSD-208ENST00000454134 TOM1O60784 492 aa24.94■■□□□ 1.58
NCKIPSD-208ENST00000454134 SLC26A8Q96RN1 970 aa24.94■■□□□ 1.58
NCKIPSD-208ENST00000454134 NAIPQ13075 1403 aa24.94■■□□□ 1.58
NCKIPSD-208ENST00000454134 BCANQ96GW7 911 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms