RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 FAM50AQ14320 339 aaKnown RBP13.37□□□□□ -0.27
SYNE1-214ENST00000454018 RTEL1-TNFRSF6BF6WH68 1400 aa13.37□□□□□ -0.27
SYNE1-214ENST00000454018 ABCC5O15440 1437 aa13.37□□□□□ -0.27
SYNE1-214ENST00000454018 C9orf84Q5VXU9 1444 aa13.37□□□□□ -0.27
SYNE1-214ENST00000454018 REREQ9P2R6 1566 aa13.37□□□□□ -0.27
SYNE1-214ENST00000454018 VASPP50552 380 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-214ENST00000454018 GCC2Q8IWJ2 1684 aa13.35□□□□□ -0.27
SYNE1-214ENST00000454018 ADGRL2O95490 1459 aa13.35□□□□□ -0.27
SYNE1-214ENST00000454018 AFAP1Q8N556 730 aa13.34□□□□□ -0.27
SYNE1-214ENST00000454018 BCANQ96GW7 911 aa13.34□□□□□ -0.27
SYNE1-214ENST00000454018 SPAG9O60271 1321 aaKnown RBP13.34□□□□□ -0.27
SYNE1-214ENST00000454018 BCORL1Q5H9F3 1711 aa13.33□□□□□ -0.28
SYNE1-214ENST00000454018 EIF2AK4Q9P2K8 1649 aaKnown RBP13.32□□□□□ -0.28
SYNE1-214ENST00000454018 YEATS2Q9ULM3 1422 aa13.32□□□□□ -0.28
SYNE1-214ENST00000454018 TSPY4P0CV99 314 aa13.32□□□□□ -0.28
SYNE1-214ENST00000454018 TSPY10P0CW01 314 aa13.32□□□□□ -0.28
SYNE1-214ENST00000454018 SIGLEC1Q9BZZ2 1709 aa13.32□□□□□ -0.28
SYNE1-214ENST00000454018 PROM2Q8N271 834 aa13.31□□□□□ -0.28
SYNE1-214ENST00000454018 ATP10AO60312 1499 aa13.3□□□□□ -0.28
SYNE1-214ENST00000454018 DUOX2Q9NRD8 1548 aa13.3□□□□□ -0.28
SYNE1-214ENST00000454018 IFNLR1Q8IU57 520 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-214ENST00000454018 PTPRKQ15262 1439 aa13.29□□□□□ -0.28
SYNE1-214ENST00000454018 ROCK1Q13464 1354 aa13.29□□□□□ -0.28
SYNE1-214ENST00000454018 ANKRD30AQ9BXX3 1397 aa13.29□□□□□ -0.28
SYNE1-214ENST00000454018 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
SYNE1-214ENST00000454018 NCOA1Q15788 1441 aa13.28□□□□□ -0.28
SYNE1-214ENST00000454018 A2MP01023 1474 aa13.28□□□□□ -0.28
SYNE1-214ENST00000454018 AGLP35573 1532 aa13.27□□□□□ -0.28
SYNE1-214ENST00000454018 MKRN4PQ13434 485 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-214ENST00000454018 TAOK2Q9UL54 1235 aa13.27□□□□□ -0.29
SYNE1-214ENST00000454018 KIF15Q9NS87 1388 aa13.26□□□□□ -0.29
SYNE1-214ENST00000454018 RNF17Q9BXT8 1623 aaKnown RBP13.26□□□□□ -0.29
SYNE1-214ENST00000454018 ERBINQ96RT1 1412 aa13.26□□□□□ -0.29
SYNE1-214ENST00000454018 DEPDC5O75140 1603 aa13.26□□□□□ -0.29
SYNE1-214ENST00000454018 ITGAEP38570 1179 aa13.24□□□□□ -0.29
SYNE1-214ENST00000454018 VSIG10Q8N0Z9 540 aa13.24□□□□□ -0.29
SYNE1-214ENST00000454018 FER1L4A9Z1Z3 1794 aa13.24□□□□□ -0.29
SYNE1-214ENST00000454018 PKD2Q13563 968 aa13.23□□□□□ -0.29
SYNE1-214ENST00000454018 HFM1A2PYH4 1435 aa13.23□□□□□ -0.29
SYNE1-214ENST00000454018 CHIC2Q9UKJ5 165 aa13.23□□□□□ -0.29
SYNE1-214ENST00000454018 DHX29Q7Z478 1369 aaKnown RBP13.23□□□□□ -0.29
SYNE1-214ENST00000454018 ZC3H13Q5T200 1668 aaKnown RBP13.22□□□□□ -0.29
SYNE1-214ENST00000454018 UNC13BO14795 1591 aa13.22□□□□□ -0.29
SYNE1-214ENST00000454018 PRDM15P57071 1507 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-214ENST00000454018 FAM135AQ9P2D6 1515 aa13.21□□□□□ -0.29
SYNE1-214ENST00000454018 MROH1Q8NDA8 1641 aa13.21□□□□□ -0.3
SYNE1-214ENST00000454018 NAIPQ13075 1403 aa13.2□□□□□ -0.3
SYNE1-214ENST00000454018 ANKRD50Q9ULJ7 1429 aa13.2□□□□□ -0.3
SYNE1-214ENST00000454018 ADAMTSL3P82987 1691 aa13.2□□□□□ -0.3
SYNE1-214ENST00000454018 CEP152O94986 1710 aa13.19□□□□□ -0.3
SYNE1-214ENST00000454018 MROH2AA6NES4 1674 aa13.19□□□□□ -0.3
SYNE1-214ENST00000454018 TRIM26Q12899 539 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-214ENST00000454018 RRP7BPQ9NSQ0 103 aa13.18□□□□□ -0.3
SYNE1-214ENST00000454018 MADDQ8WXG6 1647 aa13.17□□□□□ -0.3
SYNE1-214ENST00000454018 CLTCQ00610 1675 aaKnown RBP13.17□□□□□ -0.3
SYNE1-214ENST00000454018 IQGAP3Q86VI3 1631 aa13.17□□□□□ -0.3
SYNE1-214ENST00000454018 RIMS1Q86UR5 1692 aaKnown RBP13.16□□□□□ -0.3
SYNE1-214ENST00000454018 KDM5DQ9BY66 1539 aa13.16□□□□□ -0.3
SYNE1-214ENST00000454018 VWDEQ8N2E2 1590 aa13.15□□□□□ -0.3
SYNE1-214ENST00000454018 CAMSAP1Q5T5Y3 1602 aa13.15□□□□□ -0.3
SYNE1-214ENST00000454018 ARID4BQ4LE39 1312 aaPredicted RBP13.15□□□□□ -0.31
SYNE1-214ENST00000454018 TET3O43151 1660 aa13.14□□□□□ -0.31
SYNE1-214ENST00000454018 SETD5Q9C0A6 1442 aa13.13□□□□□ -0.31
SYNE1-214ENST00000454018 KIF3BO15066 747 aa13.13□□□□□ -0.31
SYNE1-214ENST00000454018 ABCC3O15438 1527 aa13.12□□□□□ -0.31
SYNE1-214ENST00000454018 C3P01024 1663 aa13.12□□□□□ -0.31
SYNE1-214ENST00000454018 CNTLNQ9NXG0 1405 aa13.11□□□□□ -0.31
SYNE1-214ENST00000454018 KDM2AQ9Y2K7 1162 aa13.11□□□□□ -0.31
SYNE1-214ENST00000454018 LMTK2Q8IWU2 1503 aa13.11□□□□□ -0.31
SYNE1-214ENST00000454018 KANK1Q14678 1352 aa13.09□□□□□ -0.31
SYNE1-214ENST00000454018 EFCAB6Q5THR3 1501 aa13.09□□□□□ -0.31
SYNE1-214ENST00000454018 CFAP65Q6ZU64 1925 aaKnown RBP13.09□□□□□ -0.31
SYNE1-214ENST00000454018 ACIN1Q9UKV3 1341 aaKnown RBP13.09□□□□□ -0.31
SYNE1-214ENST00000454018 RAB3GAP2Q9H2M9 1393 aa13.09□□□□□ -0.31
SYNE1-214ENST00000454018 E9PCH4 1651 aa13.08□□□□□ -0.32
SYNE1-214ENST00000454018 GGT6Q6P531 493 aa13.08□□□□□ -0.32
SYNE1-214ENST00000454018 MLECQ14165 292 aa13.07□□□□□ -0.32
SYNE1-214ENST00000454018 TPRNQ4KMQ1 711 aa13.07□□□□□ -0.32
SYNE1-214ENST00000454018 PREX1Q8TCU6 1659 aa13.07□□□□□ -0.32
SYNE1-214ENST00000454018 SPHKAPQ2M3C7 1700 aa13.05□□□□□ -0.32
SYNE1-214ENST00000454018 SETD1BQ9UPS6 1966 aaKnown RBP13.05□□□□□ -0.32
SYNE1-214ENST00000454018 ESF1Q9H501 851 aaKnown RBP13.04□□□□□ -0.32
SYNE1-214ENST00000454018 PZPP20742 1482 aa13.04□□□□□ -0.32
SYNE1-214ENST00000454018 RPRD2Q5VT52 1461 aaKnown RBP13.04□□□□□ -0.32
SYNE1-214ENST00000454018 WASHC2CQ9Y4E1 1318 aa13.03□□□□□ -0.32
SYNE1-214ENST00000454018 NUP155O75694 1391 aa13.03□□□□□ -0.32
SYNE1-214ENST00000454018 PTPRMP28827 1452 aa13.03□□□□□ -0.32
SYNE1-214ENST00000454018 HRCP23327 699 aa13.03□□□□□ -0.32
SYNE1-214ENST00000454018 ARHGAP31Q2M1Z3 1444 aa13.02□□□□□ -0.32
SYNE1-214ENST00000454018 BBXQ8WY36 941 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-214ENST00000454018 PCGF6Q9BYE7 350 aa13.01□□□□□ -0.33
SYNE1-214ENST00000454018 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
SYNE1-214ENST00000454018 NPATQ14207 1427 aa13□□□□□ -0.33
SYNE1-214ENST00000454018 ZBTB4Q9P1Z0 1013 aaPredicted RBP13□□□□□ -0.33
SYNE1-214ENST00000454018 ZNF142P52746 1687 aaPredicted RBP13□□□□□ -0.33
SYNE1-214ENST00000454018 MYO3AQ8NEV4 1616 aa13□□□□□ -0.33
SYNE1-214ENST00000454018 PAXIP1Q6ZW49 1069 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-214ENST00000454018 TRIM52Q96A61 297 aa12.99□□□□□ -0.33
SYNE1-214ENST00000454018 ZMYM3Q14202 1370 aa12.99□□□□□ -0.33
SYNE1-214ENST00000454018 KDM4FA0A1W2PPD8 638 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms