RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 CCDC141Q6ZP82 1450 aa23.02■■□□□ 1.28
LYSMD3-202ENST00000453259 KDM5DQ9BY66 1539 aa23.02■■□□□ 1.28
LYSMD3-202ENST00000453259 PZPP20742 1482 aa23.01■■□□□ 1.27
LYSMD3-202ENST00000453259 ZNF644Q9H582 1327 aaPredicted RBP23■■□□□ 1.27
LYSMD3-202ENST00000453259 CPS1P31327 1500 aa22.99■■□□□ 1.27
LYSMD3-202ENST00000453259 TNRQ92752 1358 aa22.99■■□□□ 1.27
LYSMD3-202ENST00000453259 POLR1AO95602 1720 aaPredicted RBP22.98■■□□□ 1.27
LYSMD3-202ENST00000453259 NLRP1Q9C000 1473 aa22.96■■□□□ 1.27
LYSMD3-202ENST00000453259 ARHGEF5Q12774 1597 aa22.94■■□□□ 1.26
LYSMD3-202ENST00000453259 CAMSAP2Q08AD1 1489 aa22.94■■□□□ 1.26
LYSMD3-202ENST00000453259 NEURL4Q96JN8 1562 aa22.93■■□□□ 1.26
LYSMD3-202ENST00000453259 NCOA2Q15596 1464 aa22.93■■□□□ 1.26
LYSMD3-202ENST00000453259 KIF3BO15066 747 aa22.93■■□□□ 1.26
LYSMD3-202ENST00000453259 WASHC2CQ9Y4E1 1318 aa22.91■■□□□ 1.26
LYSMD3-202ENST00000453259 SHANK2Q9UPX8 1470 aa22.91■■□□□ 1.26
LYSMD3-202ENST00000453259 THEMISQ8N1K5 641 aaPredicted RBP22.9■■□□□ 1.26
LYSMD3-202ENST00000453259 MIA2Q96PC5 1412 aa22.9■■□□□ 1.26
LYSMD3-202ENST00000453259 DEPDC5O75140 1603 aa22.9■■□□□ 1.26
LYSMD3-202ENST00000453259 TOM1O60784 492 aa22.89■■□□□ 1.25
LYSMD3-202ENST00000453259 ANKLE2Q86XL3 938 aa22.89■■□□□ 1.25
LYSMD3-202ENST00000453259 MED14O60244 1454 aa22.89■■□□□ 1.25
LYSMD3-202ENST00000453259 UGGT1Q9NYU2 1555 aa22.87■■□□□ 1.25
LYSMD3-202ENST00000453259 ZC3H13Q5T200 1668 aaKnown RBP22.87■■□□□ 1.25
LYSMD3-202ENST00000453259 TSPY4P0CV99 314 aa22.86■■□□□ 1.25
LYSMD3-202ENST00000453259 TSPY10P0CW01 314 aa22.86■■□□□ 1.25
LYSMD3-202ENST00000453259 FBXO31Q5XUX0 539 aaPredicted RBP22.86■■□□□ 1.25
LYSMD3-202ENST00000453259 RNF17Q9BXT8 1623 aaKnown RBP22.86■■□□□ 1.25
LYSMD3-202ENST00000453259 MAST1Q9Y2H9 1570 aa22.84■■□□□ 1.25
LYSMD3-202ENST00000453259 VWDEQ8N2E2 1590 aa22.83■■□□□ 1.25
LYSMD3-202ENST00000453259 NPHP4O75161 1426 aaPredicted RBP22.82■■□□□ 1.24
LYSMD3-202ENST00000453259 EIF2AK4Q9P2K8 1649 aaKnown RBP22.82■■□□□ 1.24
LYSMD3-202ENST00000453259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.82■■□□□ 1.24
LYSMD3-202ENST00000453259 ABCC3O15438 1527 aa22.79■■□□□ 1.24
LYSMD3-202ENST00000453259 IQGAP1P46940 1657 aa22.78■■□□□ 1.24
LYSMD3-202ENST00000453259 MED1Q15648 1581 aaPredicted RBP22.77■■□□□ 1.24
LYSMD3-202ENST00000453259 HSPA1LP34931 641 aa22.77■■□□□ 1.24
LYSMD3-202ENST00000453259 LRRC9Q6ZRR7 1453 aa22.77■■□□□ 1.24
LYSMD3-202ENST00000453259 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
LYSMD3-202ENST00000453259 SYNMO15061 1565 aa22.76■■□□□ 1.23
LYSMD3-202ENST00000453259 MAP3K1Q13233 1512 aa22.75■■□□□ 1.23
LYSMD3-202ENST00000453259 PIP4K2BP78356 416 aa22.74■■□□□ 1.23
LYSMD3-202ENST00000453259 VPS8Q8N3P4 1428 aa22.74■■□□□ 1.23
LYSMD3-202ENST00000453259 ERVK-7P63135 1459 aa22.73■■□□□ 1.23
LYSMD3-202ENST00000453259 MYOM3Q5VTT5 1437 aa22.7■■□□□ 1.22
LYSMD3-202ENST00000453259 DUOX2Q9NRD8 1548 aa22.7■■□□□ 1.22
LYSMD3-202ENST00000453259 MROH1Q8NDA8 1641 aa22.69■■□□□ 1.22
LYSMD3-202ENST00000453259 ALKQ9UM73 1620 aa22.68■■□□□ 1.22
LYSMD3-202ENST00000453259 LRRC7Q96NW7 1537 aa22.67■■□□□ 1.22
LYSMD3-202ENST00000453259 ARHGAP31Q2M1Z3 1444 aa22.67■■□□□ 1.22
LYSMD3-202ENST00000453259 SCAF11Q99590 1463 aaKnown RBP22.66■■□□□ 1.22
LYSMD3-202ENST00000453259 UBR1Q8IWV7 1749 aa22.65■■□□□ 1.22
LYSMD3-202ENST00000453259 SLIT1O75093 1534 aa22.65■■□□□ 1.22
LYSMD3-202ENST00000453259 PRDM15P57071 1507 aaPredicted RBP22.65■■□□□ 1.22
LYSMD3-202ENST00000453259 ARHGAP23Q9P227 1491 aa22.64■■□□□ 1.21
LYSMD3-202ENST00000453259 ERBINQ96RT1 1412 aa22.64■■□□□ 1.21
LYSMD3-202ENST00000453259 STRCP1A6NGW2 1772 aa22.61■■□□□ 1.21
LYSMD3-202ENST00000453259 CEP152O94986 1710 aa22.61■■□□□ 1.21
LYSMD3-202ENST00000453259 PHF23Q9BUL5 403 aaPredicted RBP22.6■■□□□ 1.21
LYSMD3-202ENST00000453259 KIF15Q9NS87 1388 aa22.58■■□□□ 1.21
LYSMD3-202ENST00000453259 KDM5AP29375 1690 aaKnown RBP22.58■■□□□ 1.2
LYSMD3-202ENST00000453259 CROCC2H7BZ55 1655 aa22.56■■□□□ 1.2
LYSMD3-202ENST00000453259 EID1Q9Y6B2 187 aa22.56■■□□□ 1.2
LYSMD3-202ENST00000453259 KANK1Q14678 1352 aa22.54■■□□□ 1.2
LYSMD3-202ENST00000453259 TXNDC2Q86VQ3 553 aa22.54■■□□□ 1.2
LYSMD3-202ENST00000453259 KANK4Q5T7N3 995 aaPredicted RBP22.53■■□□□ 1.2
LYSMD3-202ENST00000453259 LMTK2Q8IWU2 1503 aa22.52■■□□□ 1.19
LYSMD3-202ENST00000453259 TMEM2Q9UHN6 1383 aa22.51■■□□□ 1.19
LYSMD3-202ENST00000453259 ABCC5O15440 1437 aa22.51■■□□□ 1.19
LYSMD3-202ENST00000453259 LTKP29376 864 aa22.51■■□□□ 1.19
LYSMD3-202ENST00000453259 PIK3C2BO00750 1634 aa22.49■■□□□ 1.19
LYSMD3-202ENST00000453259 PTPN23Q9H3S7 1636 aa22.49■■□□□ 1.19
LYSMD3-202ENST00000453259 EFCAB6Q5THR3 1501 aa22.48■■□□□ 1.19
LYSMD3-202ENST00000453259 DAPK1P53355 1430 aa22.48■■□□□ 1.19
LYSMD3-202ENST00000453259 FAM135BQ49AJ0 1406 aa22.48■■□□□ 1.19
LYSMD3-202ENST00000453259 CFAP65Q6ZU64 1925 aaKnown RBP22.47■■□□□ 1.19
LYSMD3-202ENST00000453259 RRP7BPQ9NSQ0 103 aa22.45■■□□□ 1.18
LYSMD3-202ENST00000453259 ANKRD30AQ9BXX3 1397 aa22.45■■□□□ 1.18
LYSMD3-202ENST00000453259 XIRP1Q702N8 1843 aaKnown RBP22.45■■□□□ 1.18
LYSMD3-202ENST00000453259 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
LYSMD3-202ENST00000453259 FGD6Q6ZV73 1430 aa22.42■■□□□ 1.18
LYSMD3-202ENST00000453259 APLP2Q06481 763 aa22.42■■□□□ 1.18
LYSMD3-202ENST00000453259 NKTRP30414 1462 aaKnown RBP22.41■■□□□ 1.18
LYSMD3-202ENST00000453259 TET3O43151 1660 aa22.4■■□□□ 1.18
LYSMD3-202ENST00000453259 KCNA6P17658 529 aa22.4■■□□□ 1.18
LYSMD3-202ENST00000453259 NOS1P29475 1434 aa22.4■■□□□ 1.18
LYSMD3-202ENST00000453259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.39■■□□□ 1.17
LYSMD3-202ENST00000453259 SLC52A1Q9NWF4 448 aa22.39■■□□□ 1.17
LYSMD3-202ENST00000453259 ADGRB3O60242 1522 aa22.39■■□□□ 1.17
LYSMD3-202ENST00000453259 RPRD2Q5VT52 1461 aaKnown RBP22.39■■□□□ 1.17
LYSMD3-202ENST00000453259 TMEM94Q12767 1356 aa22.38■■□□□ 1.17
LYSMD3-202ENST00000453259 IDI1Q13907 227 aa22.38■■□□□ 1.17
LYSMD3-202ENST00000453259 NWD1Q149M9 1564 aa22.38■■□□□ 1.17
LYSMD3-202ENST00000453259 ADGRL2O95490 1459 aa22.36■■□□□ 1.17
LYSMD3-202ENST00000453259 LOC105371045A0A1W2PR82 267 aa22.35■■□□□ 1.17
LYSMD3-202ENST00000453259 SENP3Q9H4L4 574 aaPredicted RBP22.32■■□□□ 1.16
LYSMD3-202ENST00000453259 RGS17Q9UGC6 210 aaPredicted RBP22.32■■□□□ 1.16
LYSMD3-202ENST00000453259 ROBO1Q9Y6N7 1651 aa22.32■■□□□ 1.16
LYSMD3-202ENST00000453259 PROSER2Q86WR7 435 aaPredicted RBP22.31■■□□□ 1.16
LYSMD3-202ENST00000453259 MSH6P52701 1360 aa22.3■■□□□ 1.16
LYSMD3-202ENST00000453259 HDGFP51858 240 aaKnown RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms