RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 EIF2AK4Q9P2K8 1649 aaKnown RBP17.45■□□□□ 0.38
SCN9A-204ENST00000452182 BCORL1Q5H9F3 1711 aa17.44■□□□□ 0.38
SCN9A-204ENST00000452182 NAIPQ13075 1403 aa17.44■□□□□ 0.38
SCN9A-204ENST00000452182 SIGLEC1Q9BZZ2 1709 aa17.43■□□□□ 0.38
SCN9A-204ENST00000452182 ANKRD50Q9ULJ7 1429 aa17.42■□□□□ 0.38
SCN9A-204ENST00000452182 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
SCN9A-204ENST00000452182 RNF17Q9BXT8 1623 aaKnown RBP17.37■□□□□ 0.37
SCN9A-204ENST00000452182 SETD5Q9C0A6 1442 aa17.37■□□□□ 0.37
SCN9A-204ENST00000452182 DEPDC5O75140 1603 aa17.37■□□□□ 0.37
SCN9A-204ENST00000452182 KIF3BO15066 747 aa17.35■□□□□ 0.37
SCN9A-204ENST00000452182 ARID4BQ4LE39 1312 aaPredicted RBP17.34■□□□□ 0.37
SCN9A-204ENST00000452182 ACIN1Q9UKV3 1341 aaKnown RBP17.34■□□□□ 0.37
SCN9A-204ENST00000452182 UNC13BO14795 1591 aa17.33■□□□□ 0.37
SCN9A-204ENST00000452182 PRDM15P57071 1507 aaPredicted RBP17.32■□□□□ 0.36
SCN9A-204ENST00000452182 HRCP23327 699 aa17.32■□□□□ 0.36
SCN9A-204ENST00000452182 MROH1Q8NDA8 1641 aa17.32■□□□□ 0.36
SCN9A-204ENST00000452182 FAM135AQ9P2D6 1515 aa17.32■□□□□ 0.36
SCN9A-204ENST00000452182 SLC4A1APQ9BWU0 796 aaKnown RBP17.32■□□□□ 0.36
SCN9A-204ENST00000452182 NPM3O75607 178 aaKnown RBP17.31■□□□□ 0.36
SCN9A-204ENST00000452182 RAB3GAP2Q9H2M9 1393 aa17.3■□□□□ 0.36
SCN9A-204ENST00000452182 PCGF6Q9BYE7 350 aa17.3■□□□□ 0.36
SCN9A-204ENST00000452182 VWDEQ8N2E2 1590 aa17.29■□□□□ 0.36
SCN9A-204ENST00000452182 KDM5DQ9BY66 1539 aa17.29■□□□□ 0.36
SCN9A-204ENST00000452182 GGT6Q6P531 493 aa17.29■□□□□ 0.36
SCN9A-204ENST00000452182 CNKSR2Q8WXI2 1034 aa17.29■□□□□ 0.36
SCN9A-204ENST00000452182 ADAMTSL3P82987 1691 aa17.28■□□□□ 0.36
SCN9A-204ENST00000452182 ZC3H13Q5T200 1668 aaKnown RBP17.28■□□□□ 0.36
SCN9A-204ENST00000452182 IQGAP3Q86VI3 1631 aa17.26■□□□□ 0.35
SCN9A-204ENST00000452182 KANK1Q14678 1352 aa17.26■□□□□ 0.35
SCN9A-204ENST00000452182 FER1L4A9Z1Z3 1794 aa17.25■□□□□ 0.35
SCN9A-204ENST00000452182 LMTK2Q8IWU2 1503 aa17.25■□□□□ 0.35
SCN9A-204ENST00000452182 MLECQ14165 292 aa17.25■□□□□ 0.35
SCN9A-204ENST00000452182 ABCC3O15438 1527 aa17.24■□□□□ 0.35
SCN9A-204ENST00000452182 NUP155O75694 1391 aa17.24■□□□□ 0.35
SCN9A-204ENST00000452182 CNTLNQ9NXG0 1405 aa17.23■□□□□ 0.35
SCN9A-204ENST00000452182 MADDQ8WXG6 1647 aa17.23■□□□□ 0.35
SCN9A-204ENST00000452182 MROH2AA6NES4 1674 aa17.22■□□□□ 0.35
SCN9A-204ENST00000452182 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.355e-7■■□□□ 12.4
SCN9A-204ENST00000452182 WASHC2CQ9Y4E1 1318 aa17.22■□□□□ 0.35
SCN9A-204ENST00000452182 CLTCQ00610 1675 aaKnown RBP17.22■□□□□ 0.35
SCN9A-204ENST00000452182 CEP152O94986 1710 aa17.22■□□□□ 0.35
SCN9A-204ENST00000452182 TET3O43151 1660 aa17.21■□□□□ 0.35
SCN9A-204ENST00000452182 TRIM52Q96A61 297 aa17.2■□□□□ 0.34
SCN9A-204ENST00000452182 ESF1Q9H501 851 aaKnown RBP17.2■□□□□ 0.34
SCN9A-204ENST00000452182 CAMSAP1Q5T5Y3 1602 aa17.19■□□□□ 0.34
SCN9A-204ENST00000452182 PZPP20742 1482 aa17.19■□□□□ 0.34
SCN9A-204ENST00000452182 EFCAB6Q5THR3 1501 aa17.18■□□□□ 0.34
SCN9A-204ENST00000452182 ARHGAP31Q2M1Z3 1444 aa17.18■□□□□ 0.34
SCN9A-204ENST00000452182 RIMS1Q86UR5 1692 aaKnown RBP17.18■□□□□ 0.34
SCN9A-204ENST00000452182 ZMYM3Q14202 1370 aa17.16■□□□□ 0.34
SCN9A-204ENST00000452182 RPRD2Q5VT52 1461 aaKnown RBP17.15■□□□□ 0.34
SCN9A-204ENST00000452182 KDM4FA0A1W2PPD8 638 aa17.14■□□□□ 0.33
SCN9A-204ENST00000452182 C3P01024 1663 aa17.14■□□□□ 0.33
SCN9A-204ENST00000452182 MPHOSPH9Q99550 1183 aa17.14■□□□□ 0.33
SCN9A-204ENST00000452182 E9PCH4 1651 aa17.13■□□□□ 0.33
SCN9A-204ENST00000452182 NPATQ14207 1427 aa17.13■□□□□ 0.33
SCN9A-204ENST00000452182 PTPRMP28827 1452 aa17.12■□□□□ 0.33
SCN9A-204ENST00000452182 PKD2Q13563 968 aa17.09■□□□□ 0.33
SCN9A-204ENST00000452182 PREX1Q8TCU6 1659 aa17.09■□□□□ 0.33
SCN9A-204ENST00000452182 SPATA31D1Q6ZQQ2 1576 aa17.09■□□□□ 0.33
SCN9A-204ENST00000452182 ERVK-7P63135 1459 aa17.07■□□□□ 0.32
SCN9A-204ENST00000452182 NOS1P29475 1434 aa17.07■□□□□ 0.32
SCN9A-204ENST00000452182 SPHKAPQ2M3C7 1700 aa17.06■□□□□ 0.32
SCN9A-204ENST00000452182 DHX57Q6P158 1386 aaKnown RBP17.06■□□□□ 0.32
SCN9A-204ENST00000452182 PTPRTO14522 1441 aa17.06■□□□□ 0.32
SCN9A-204ENST00000452182 CFAP65Q6ZU64 1925 aaKnown RBP17.05■□□□□ 0.32
SCN9A-204ENST00000452182 CEBPAP49715 358 aaPredicted RBP17.05■□□□□ 0.32
SCN9A-204ENST00000452182 FBXO31Q5XUX0 539 aaPredicted RBP17.03■□□□□ 0.32
SCN9A-204ENST00000452182 TRPM2O94759 1503 aa17.03■□□□□ 0.32
SCN9A-204ENST00000452182 SETD1BQ9UPS6 1966 aaKnown RBP17.02■□□□□ 0.32
SCN9A-204ENST00000452182 SYNMO15061 1565 aa17.02■□□□□ 0.32
SCN9A-204ENST00000452182 PLA2R1Q13018 1463 aa17.02■□□□□ 0.31
SCN9A-204ENST00000452182 MAPK8IP2Q13387 824 aaPredicted RBP17.01■□□□□ 0.31
SCN9A-204ENST00000452182 PIK3C2BO00750 1634 aa17■□□□□ 0.31
SCN9A-204ENST00000452182 TNRQ92752 1358 aa17■□□□□ 0.31
SCN9A-204ENST00000452182 ANKRD30BQ9BXX2 1392 aa17■□□□□ 0.31
SCN9A-204ENST00000452182 SLC52A1Q9NWF4 448 aa16.99■□□□□ 0.31
SCN9A-204ENST00000452182 NLRP1Q9C000 1473 aa16.98■□□□□ 0.31
SCN9A-204ENST00000452182 MYO3AQ8NEV4 1616 aa16.97■□□□□ 0.31
SCN9A-204ENST00000452182 KDM5AP29375 1690 aaKnown RBP16.96■□□□□ 0.3
SCN9A-204ENST00000452182 CLTCL1P53675 1640 aa16.95■□□□□ 0.3
SCN9A-204ENST00000452182 ZNF142P52746 1687 aaPredicted RBP16.95■□□□□ 0.3
SCN9A-204ENST00000452182 CCDC144AA2RUR9 1427 aa16.95■□□□□ 0.3
SCN9A-204ENST00000452182 CLSPNQ9HAW4 1339 aa16.94■□□□□ 0.3
SCN9A-204ENST00000452182 UGGT1Q9NYU2 1555 aa16.94■□□□□ 0.3
SCN9A-204ENST00000452182 IDI1Q13907 227 aa16.93■□□□□ 0.3
SCN9A-204ENST00000452182 A2ML1A8K2U0 1454 aa16.92■□□□□ 0.3
SCN9A-204ENST00000452182 KIF1BO60333 1816 aa16.92■□□□□ 0.3
SCN9A-204ENST00000452182 CEP170BQ9Y4F5 1589 aaPredicted RBP16.92■□□□□ 0.3
SCN9A-204ENST00000452182 UHRF1BP1Q6BDS2 1440 aa16.92■□□□□ 0.3
SCN9A-204ENST00000452182 NEURL4Q96JN8 1562 aa16.91■□□□□ 0.3
SCN9A-204ENST00000452182 UBR1Q8IWV7 1749 aa16.91■□□□□ 0.3
SCN9A-204ENST00000452182 TMEM131LA2VDJ0 1609 aa16.9■□□□□ 0.3
SCN9A-204ENST00000452182 ADGRB3O60242 1522 aa16.9■□□□□ 0.3
SCN9A-204ENST00000452182 CCER1Q8TC90 406 aaPredicted RBP16.88■□□□□ 0.29
SCN9A-204ENST00000452182 MYO5BQ9ULV0 1848 aa16.87■□□□□ 0.29
SCN9A-204ENST00000452182 SPATA31E1Q6ZUB1 1445 aa16.86■□□□□ 0.29
SCN9A-204ENST00000452182 LMTK3Q96Q04 1460 aa16.86■□□□□ 0.29
SCN9A-204ENST00000452182 THEMISQ8N1K5 641 aaPredicted RBP16.84■□□□□ 0.29
SCN9A-204ENST00000452182 STAG3Q9UJ98 1225 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms