RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 KDM5DQ9BY66 1539 aa30.27■■■□□ 2.44
USP40-207ENST00000450940 RNF17Q9BXT8 1623 aaKnown RBP30.26■■■□□ 2.44
USP40-207ENST00000450940 EIF2AK4Q9P2K8 1649 aaKnown RBP30.26■■■□□ 2.44
USP40-207ENST00000450940 DMRT2Q9Y5R5 561 aa30.25■■■□□ 2.43
USP40-207ENST00000450940 DNMT1P26358 1616 aaKnown RBP30.24■■■□□ 2.43
USP40-207ENST00000450940 MYO3AQ8NEV4 1616 aa30.24■■■□□ 2.43
USP40-207ENST00000450940 ZNF142P52746 1687 aaPredicted RBP30.23■■■□□ 2.43
USP40-207ENST00000450940 DUOX2Q9NRD8 1548 aa30.22■■■□□ 2.43
USP40-207ENST00000450940 WASHC2CQ9Y4E1 1318 aa30.22■■■□□ 2.43
USP40-207ENST00000450940 DAPK1P53355 1430 aa30.21■■■□□ 2.43
USP40-207ENST00000450940 NCOA1Q15788 1441 aa30.2■■■□□ 2.42
USP40-207ENST00000450940 PZPP20742 1482 aa30.19■■■□□ 2.42
USP40-207ENST00000450940 PTPRTO14522 1441 aa30.18■■■□□ 2.42
USP40-207ENST00000450940 CEP170BQ9Y4F5 1589 aaPredicted RBP30.17■■■□□ 2.42
USP40-207ENST00000450940 CAMSAP1Q5T5Y3 1602 aa30.16■■■□□ 2.42
USP40-207ENST00000450940 MROH1Q8NDA8 1641 aa30.16■■■□□ 2.42
USP40-207ENST00000450940 ZC3H13Q5T200 1668 aaKnown RBP30.15■■■□□ 2.42
USP40-207ENST00000450940 FBXO41Q8TF61 875 aa30.15■■■□□ 2.42
USP40-207ENST00000450940 KIF15Q9NS87 1388 aa30.15■■■□□ 2.42
USP40-207ENST00000450940 FBXO31Q5XUX0 539 aaPredicted RBP30.13■■■□□ 2.41
USP40-207ENST00000450940 ABCC3O15438 1527 aa30.12■■■□□ 2.41
USP40-207ENST00000450940 ERBINQ96RT1 1412 aa30.12■■■□□ 2.41
USP40-207ENST00000450940 A2ML1A8K2U0 1454 aa30.12■■■□□ 2.41
USP40-207ENST00000450940 PLA2R1Q13018 1463 aa30.11■■■□□ 2.41
USP40-207ENST00000450940 RRP7BPQ9NSQ0 103 aa30.1■■■□□ 2.41
USP40-207ENST00000450940 TNRQ92752 1358 aa30.1■■■□□ 2.41
USP40-207ENST00000450940 CERKQ8TCT0 537 aa30.07■■■□□ 2.4
USP40-207ENST00000450940 ANKRD30AQ9BXX3 1397 aa30.06■■■□□ 2.4
USP40-207ENST00000450940 PRDM15P57071 1507 aaPredicted RBP30.05■■■□□ 2.4
USP40-207ENST00000450940 CEP152O94986 1710 aa30.05■■■□□ 2.4
USP40-207ENST00000450940 DEPDC5O75140 1603 aa30.04■■■□□ 2.4
USP40-207ENST00000450940 ADGRL2O95490 1459 aa30.04■■■□□ 2.4
USP40-207ENST00000450940 PKD2Q13563 968 aa30.03■■■□□ 2.4
USP40-207ENST00000450940 CHIC2Q9UKJ5 165 aa30.02■■■□□ 2.4
USP40-207ENST00000450940 SPATA31D1Q6ZQQ2 1576 aa30.02■■■□□ 2.4
USP40-207ENST00000450940 NCKAP5LQ9HCH0 1330 aa30.01■■■□□ 2.4
USP40-207ENST00000450940 NLRP1Q9C000 1473 aa30.01■■■□□ 2.4
USP40-207ENST00000450940 FAM50AQ14320 339 aaKnown RBP29.99■■■□□ 2.39
USP40-207ENST00000450940 ARHGAP31Q2M1Z3 1444 aa29.97■■■□□ 2.39
USP40-207ENST00000450940 ERVK-7P63135 1459 aa29.96■■■□□ 2.39
USP40-207ENST00000450940 LTBP4Q8N2S1 1624 aa29.95■■■□□ 2.38
USP40-207ENST00000450940 CFAP65Q6ZU64 1925 aaKnown RBP29.94■■■□□ 2.38
USP40-207ENST00000450940 VWDEQ8N2E2 1590 aa29.93■■■□□ 2.38
USP40-207ENST00000450940 UGGT1Q9NYU2 1555 aa29.91■■■□□ 2.38
USP40-207ENST00000450940 THEMISQ8N1K5 641 aaPredicted RBP29.91■■■□□ 2.38
USP40-207ENST00000450940 POLR1AO95602 1720 aaPredicted RBP29.91■■■□□ 2.38
USP40-207ENST00000450940 LMTK2Q8IWU2 1503 aa29.9■■■□□ 2.38
USP40-207ENST00000450940 KANK1Q14678 1352 aa29.9■■■□□ 2.38
USP40-207ENST00000450940 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.88■■■□□ 2.371e-13■■■□□ 16.3
USP40-207ENST00000450940 NEURL4Q96JN8 1562 aa29.86■■■□□ 2.37
USP40-207ENST00000450940 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.86■■■□□ 2.37
USP40-207ENST00000450940 ANKRD50Q9ULJ7 1429 aa29.85■■■□□ 2.37
USP40-207ENST00000450940 IQSEC2Q5JU85 1478 aa29.82■■■□□ 2.36
USP40-207ENST00000450940 ROCK1Q13464 1354 aa29.82■■■□□ 2.36
USP40-207ENST00000450940 ANKLE2Q86XL3 938 aa29.82■■■□□ 2.36
USP40-207ENST00000450940 UBR1Q8IWV7 1749 aa29.81■■■□□ 2.36
USP40-207ENST00000450940 PPARGC1BQ86YN6 1023 aaKnown RBP29.8■■■□□ 2.36
USP40-207ENST00000450940 MED14O60244 1454 aa29.8■■■□□ 2.36
USP40-207ENST00000450940 ZNF335Q9H4Z2 1342 aaPredicted RBP29.79■■■□□ 2.36
USP40-207ENST00000450940 EFCAB6Q5THR3 1501 aa29.77■■■□□ 2.36
USP40-207ENST00000450940 UNC13BO14795 1591 aa29.73■■■□□ 2.35
USP40-207ENST00000450940 NPHP4O75161 1426 aaPredicted RBP29.72■■■□□ 2.35
USP40-207ENST00000450940 NOS1P29475 1434 aa29.71■■■□□ 2.35
USP40-207ENST00000450940 KDM5AP29375 1690 aaKnown RBP29.71■■■□□ 2.35
USP40-207ENST00000450940 PIK3C2BO00750 1634 aa29.71■■■□□ 2.35
USP40-207ENST00000450940 ARHGAP23Q9P227 1491 aa29.7■■■□□ 2.35
USP40-207ENST00000450940 SLIT1O75093 1534 aa29.7■■■□□ 2.34
USP40-207ENST00000450940 SYNMO15061 1565 aa29.69■■■□□ 2.34
USP40-207ENST00000450940 RPRD2Q5VT52 1461 aaKnown RBP29.69■■■□□ 2.34
USP40-207ENST00000450940 TET3O43151 1660 aa29.69■■■□□ 2.34
USP40-207ENST00000450940 IQGAP1P46940 1657 aa29.69■■■□□ 2.34
USP40-207ENST00000450940 RRBP1Q9P2E9 1410 aaKnown RBP29.68■■■□□ 2.34
USP40-207ENST00000450940 GCC2Q8IWJ2 1684 aa29.66■■■□□ 2.34
USP40-207ENST00000450940 IDI1Q13907 227 aa29.65■■■□□ 2.34
USP40-207ENST00000450940 ITGAEP38570 1179 aa29.64■■■□□ 2.34
USP40-207ENST00000450940 SCAF11Q99590 1463 aaKnown RBP29.63■■■□□ 2.33
USP40-207ENST00000450940 CPS1P31327 1500 aa29.63■■■□□ 2.33
USP40-207ENST00000450940 IQGAP3Q86VI3 1631 aa29.61■■■□□ 2.33
USP40-207ENST00000450940 SLC52A1Q9NWF4 448 aa29.61■■■□□ 2.33
USP40-207ENST00000450940 LTKP29376 864 aa29.6■■■□□ 2.33
USP40-207ENST00000450940 TMEM2Q9UHN6 1383 aa29.6■■■□□ 2.33
USP40-207ENST00000450940 TXNDC2Q86VQ3 553 aa29.58■■■□□ 2.33
USP40-207ENST00000450940 E9PCH4 1651 aa29.56■■■□□ 2.32
USP40-207ENST00000450940 STAG3Q9UJ98 1225 aa29.55■■■□□ 2.32
USP40-207ENST00000450940 EID1Q9Y6B2 187 aa29.55■■■□□ 2.32
USP40-207ENST00000450940 ADGRB3O60242 1522 aa29.55■■■□□ 2.32
USP40-207ENST00000450940 STRCP1A6NGW2 1772 aa29.53■■■□□ 2.32
USP40-207ENST00000450940 NUP155O75694 1391 aa29.52■■■□□ 2.32
USP40-207ENST00000450940 UBAP1LF5GYI3 381 aa29.48■■■□□ 2.31
USP40-207ENST00000450940 MYO5BQ9ULV0 1848 aa29.48■■■□□ 2.31
USP40-207ENST00000450940 TMEM131LA2VDJ0 1609 aa29.46■■■□□ 2.31
USP40-207ENST00000450940 NAIPQ13075 1403 aa29.45■■■□□ 2.31
USP40-207ENST00000450940 LRRC7Q96NW7 1537 aa29.42■■■□□ 2.3
USP40-207ENST00000450940 ZFYVE9O95405 1425 aa29.41■■■□□ 2.3
USP40-207ENST00000450940 HFM1A2PYH4 1435 aa29.37■■■□□ 2.29
USP40-207ENST00000450940 TOM1O60784 492 aa29.36■■■□□ 2.29
USP40-207ENST00000450940 RIMS2Q9UQ26 1411 aa29.35■■■□□ 2.29
USP40-207ENST00000450940 HDGFP51858 240 aaKnown RBP29.34■■■□□ 2.29
USP40-207ENST00000450940 ALKQ9UM73 1620 aa29.34■■■□□ 2.29
USP40-207ENST00000450940 SPHKAPQ2M3C7 1700 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 186.4 ms